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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 416 |
| AciI | CCGC | 2 cut(s) | 509, 524 |
| AclWI | GGATC | 2 cut(s) | 506, 519 |
| AcsI | RAATTY | 1 cut(s) | 704 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 199, 343 |
| AgsI | TTSAA | 3 cut(s) | 173, 263, 628 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 293, 325 |
| AluBI | AGCT | 3 cut(s) | 464, 644, 683 |
| AluI | AGCT | 3 cut(s) | 464, 644, 683 |
| Alw26I | GTCTC | 3 cut(s) | 197, 538, 641 |
| AlwI | GGATC | 2 cut(s) | 506, 519 |
| ApeKI | GCWGC | 2 cut(s) | 641, 761 |
| ApoI | RAATTY | 1 cut(s) | 704 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 31 |
| AsuHPI | GGTGA | 2 cut(s) | 268, 284 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 561, 594 |
| BamHI | GGATCC | 1 cut(s) | 511 |
| BbsI | GAAGAC | 2 cut(s) | 123, 270 |
| BbvI | GCAGC | 2 cut(s) | 653, 748 |
| BccI | CCATC | 1 cut(s) | 263 |
| BciVI | GTATCC | 1 cut(s) | 562 |
| BcoDI | GTCTC | 3 cut(s) | 197, 538, 641 |
| BfaI | CTAG | 3 cut(s) | 18, 51, 179 |
| BfmI | CTRYAG | 1 cut(s) | 818 |
| BfuI | GTATCC | 1 cut(s) | 562 |
| BglII | AGATCT | 1 cut(s) | 726 |
| BisI | GCNGC | 2 cut(s) | 642, 762 |
| BlsI | GCNGC | 2 cut(s) | 643, 763 |
| BmiI | GGNNCC | 3 cut(s) | 458, 513, 528 |
| BmsI | GCATC | 1 cut(s) | 511 |
| BpiI | GAAGAC | 2 cut(s) | 123, 270 |
| BsaI | GGTCTC | 2 cut(s) | 197, 538 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 199, 343 |
| Bse118I | RCCGGY | 1 cut(s) | 805 |
| Bse1I | ACTGG | 4 cut(s) | 223, 485, 515, 639 |
| Bse3DI | GCAATG | 1 cut(s) | 600 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 199, 343 |
| BseMI | GCAATG | 1 cut(s) | 600 |
| BseMII | CTCAG | 3 cut(s) | 441, 456, 636 |
| BseNI | ACTGG | 4 cut(s) | 223, 485, 515, 639 |
| BseRI | GAGGAG | 2 cut(s) | 215, 305 |
| BseXI | GCAGC | 2 cut(s) | 653, 748 |
| BsgI | GTGCAG | 1 cut(s) | 747 |
| Bsh1285I | CGRYCG | 1 cut(s) | 420 |
| BsiEI | CGRYCG | 1 cut(s) | 420 |
| BsiSI | CCGG | 1 cut(s) | 806 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 199, 343 |
| BsmAI | GTCTC | 3 cut(s) | 197, 538, 641 |
| BsmBI | CGTCTC | 1 cut(s) | 641 |
| Bso31I | GGTCTC | 2 cut(s) | 197, 538 |
| Bsp143I | GATC | 4 cut(s) | 427, 511, 613, 726 |
| BspACI | CCGC | 2 cut(s) | 509, 524 |
| BspCNI | CTCAG | 3 cut(s) | 442, 457, 637 |
| BspLI | GGNNCC | 3 cut(s) | 458, 513, 528 |
| BspMAI | CTGCAG | 1 cut(s) | 822 |
| BspPI | GGATC | 2 cut(s) | 506, 519 |
| BspQI | GCTCTTC | 1 cut(s) | 145 |
| BspTNI | GGTCTC | 2 cut(s) | 197, 538 |
| BsrDI | GCAATG | 1 cut(s) | 600 |
| BsrFI | RCCGGY | 1 cut(s) | 805 |
| BsrI | ACTGG | 4 cut(s) | 223, 485, 515, 639 |
| BssAI | RCCGGY | 1 cut(s) | 805 |
| BssMI | GATC | 4 cut(s) | 427, 511, 613, 726 |
| Bst4CI | ACNGT | 1 cut(s) | 577 |
| Bst6I | CTCTTC | 3 cut(s) | 145, 192, 546 |
| BstC8I | GCNNGC | 2 cut(s) | 184, 807 |
| BstDEI | CTNAG | 3 cut(s) | 450, 465, 645 |
| BstKTI | GATC | 4 cut(s) | 430, 514, 616, 729 |
| BstMAI | GTCTC | 3 cut(s) | 197, 538, 641 |
| BstMBI | GATC | 4 cut(s) | 427, 511, 613, 726 |
| BstMCI | CGRYCG | 1 cut(s) | 420 |
| BstSFI | CTRYAG | 1 cut(s) | 818 |
| BstV1I | GCAGC | 2 cut(s) | 653, 748 |
| BstV2I | GAAGAC | 2 cut(s) | 123, 270 |
| BstX2I | RGATCY | 2 cut(s) | 511, 726 |
| BstYI | RGATCY | 2 cut(s) | 511, 726 |
| BsuI | GTATCC | 1 cut(s) | 562 |
| Cac8I | GCNNGC | 2 cut(s) | 184, 807 |
| Cfr10I | RCCGGY | 1 cut(s) | 805 |
| CviAII | CATG | 2 cut(s) | 226, 443 |
| CviJI | RGCY | 7 cut(s) | 186, 464, 475, 644, 683, 775, 805 |
| CviKI_1 | RGCY | 7 cut(s) | 186, 464, 475, 644, 683, 775, 805 |
| DdeI | CTNAG | 3 cut(s) | 450, 465, 645 |
| DpnI | GATC | 4 cut(s) | 429, 513, 615, 728 |
| DpnII | GATC | 4 cut(s) | 427, 511, 613, 726 |
| Eam1104I | CTCTTC | 3 cut(s) | 145, 192, 546 |
| EarI | CTCTTC | 3 cut(s) | 145, 192, 546 |
| Eco31I | GGTCTC | 2 cut(s) | 197, 538 |
| Esp3I | CGTCTC | 1 cut(s) | 641 |
| FaeI | CATG | 2 cut(s) | 229, 446 |
| FaiI | YATR | 7 cut(s) | 209, 227, 339, 444, 471, 714, 741 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 293, 325 |
| FatI | CATG | 2 cut(s) | 225, 442 |
| FblI | GTMKAC | 1 cut(s) | 416 |
| Fnu4HI | GCNGC | 2 cut(s) | 642, 762 |
| Fsp4HI | GCNGC | 2 cut(s) | 642, 762 |
| FspBI | CTAG | 3 cut(s) | 18, 51, 179 |
| GluI | GCNGC | 2 cut(s) | 642, 762 |
| HapII | CCGG | 1 cut(s) | 806 |
| Hin1II | CATG | 2 cut(s) | 229, 446 |
| HincII | GTYRAC | 2 cut(s) | 417, 490 |
| HindII | GTYRAC | 2 cut(s) | 417, 490 |
| HinfI | GANTC | 3 cut(s) | 327, 446, 599 |
| HpaII | CCGG | 1 cut(s) | 806 |
| HphI | GGTGA | 2 cut(s) | 268, 284 |
| Hpy166II | GTNNAC | 3 cut(s) | 417, 490, 580 |
| Hpy188I | TCNGA | 2 cut(s) | 451, 604 |
| Hpy188III | TCNNGA | 1 cut(s) | 30 |
| Hpy8I | GTNNAC | 3 cut(s) | 417, 490, 580 |
| Hpy99I | CGWCG | 1 cut(s) | 704 |
| HpyAV | CCTTC | 3 cut(s) | 71, 317, 682 |
| HpyCH4III | ACNGT | 1 cut(s) | 577 |
| HpyCH4V | TGCA | 4 cut(s) | 540, 593, 764, 820 |
| HpyF3I | CTNAG | 3 cut(s) | 450, 465, 645 |
| Hsp92II | CATG | 2 cut(s) | 229, 446 |
| KroI | GCCGGC | 1 cut(s) | 805 |
| KroNI | GCCGGC | 1 cut(s) | 807 |
| Kzo9I | GATC | 4 cut(s) | 427, 511, 613, 726 |
| LguI | GCTCTTC | 1 cut(s) | 145 |
| LmnI | GCTCC | 1 cut(s) | 292 |
| Lsp1109I | GCAGC | 2 cut(s) | 653, 748 |
| LweI | GCATC | 1 cut(s) | 511 |
| MaeI | CTAG | 3 cut(s) | 18, 51, 179 |
| MaeIII | GTNAC | 5 cut(s) | 27, 56, 214, 221, 361 |
| MalI | GATC | 4 cut(s) | 429, 513, 615, 728 |
| MboI | GATC | 4 cut(s) | 427, 511, 613, 726 |
| MflI | RGATCY | 2 cut(s) | 511, 726 |
| MluCI | AATT | 2 cut(s) | 617, 704 |
| MlyI | GAGTC | 1 cut(s) | 321 |
| MnlI | CCTC | 8 cut(s) | 140, 193, 283, 429, 445, 486, 547, 645 |
| MroNI | GCCGGC | 1 cut(s) | 805 |
| MseI | TTAA | 3 cut(s) | 564, 708, 731 |
| MspA1I | CMGCKG | 2 cut(s) | 509, 644 |
| MspI | CCGG | 1 cut(s) | 806 |
| NaeI | GCCGGC | 1 cut(s) | 807 |
| NdeII | GATC | 4 cut(s) | 427, 511, 613, 726 |
| NgoMIV | GCCGGC | 1 cut(s) | 805 |
| NlaIII | CATG | 2 cut(s) | 229, 446 |
| NlaIV | GGNNCC | 3 cut(s) | 458, 513, 528 |
| NmuCI | GTSAC | 2 cut(s) | 27, 56 |
| PciSI | GCTCTTC | 1 cut(s) | 145 |
| PdiI | GCCGGC | 1 cut(s) | 807 |
| PfeI | GAWTC | 2 cut(s) | 446, 599 |
| PkrI | GCNGC | 2 cut(s) | 643, 763 |
| PleI | GAGTC | 1 cut(s) | 321 |
| PpsI | GAGTC | 1 cut(s) | 321 |
| PspN4I | GGNNCC | 3 cut(s) | 458, 513, 528 |
| PstI | CTGCAG | 1 cut(s) | 822 |
| PsuI | RGATCY | 2 cut(s) | 511, 726 |
| PvuII | CAGCTG | 1 cut(s) | 644 |
| SalI | GTCGAC | 1 cut(s) | 415 |
| SapI | GCTCTTC | 1 cut(s) | 145 |
| SaqAI | TTAA | 3 cut(s) | 564, 708, 731 |
| SatI | GCNGC | 2 cut(s) | 642, 762 |
| Sau3AI | GATC | 4 cut(s) | 427, 511, 613, 726 |
| SchI | GAGTC | 1 cut(s) | 321 |
| SetI | ASST | 5 cut(s) | 363, 466, 646, 681, 685 |
| SfaNI | GCATC | 1 cut(s) | 511 |
| SfcI | CTRYAG | 1 cut(s) | 818 |
| Sse9I | AATT | 2 cut(s) | 617, 704 |
| SsiI | CCGC | 2 cut(s) | 509, 524 |
| SspMI | CTAG | 3 cut(s) | 18, 51, 179 |
| TaaI | ACNGT | 1 cut(s) | 577 |
| TaqI | TCGA | 1 cut(s) | 416 |
| TaqII | GACCGA | 1 cut(s) | 434 |
| TasI | AATT | 2 cut(s) | 617, 704 |
| TfiI | GAWTC | 2 cut(s) | 446, 599 |
| Tru1I | TTAA | 3 cut(s) | 564, 708, 731 |
| Tru9I | TTAA | 3 cut(s) | 564, 708, 731 |
| TseFI | GTSAC | 2 cut(s) | 27, 56 |
| TseI | GCWGC | 2 cut(s) | 641, 761 |
| Tsp45I | GTSAC | 2 cut(s) | 27, 56 |
| TspDTI | ATGAA | 4 cut(s) | 242, 314, 336, 459 |
| XapI | RAATTY | 1 cut(s) | 704 |
| XmiI | GTMKAC | 1 cut(s) | 416 |
| XspI | CTAG | 3 cut(s) | 18, 51, 179 |