Rh4CG152600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
33639815 .. 33640447
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG152600.1

Sequence Viewer

Length: 633 bp
ATGATTGAGGTGATGCAGGAAAACAGATCGCACCAGAACCACATAAAAGCTCTGAAGAAATGTTTGGCGAAAGCAACCAGCAGGAACCCTGACCTGAAAAGCAGTGAGCAACAAAATAATCAACAACAGATGGTGCTGGTGTCGACCGAGAAAGATCACAGGAGGGAATCTACGGGGAACTTTGCAAAATTTGACACTCAAACACCAGTCAACGAAGAACCAAGGGCAGCAGATCCAATTAATGCATTTCCAATATCTTACAAGAGTCCAGAACGGGAAGTGTTTGAGGATACACATTTGGACACACTAAATGAGATGGAATCAGAAAAAATAGGTCAACTTGTGTCGAAAATACTGGAAGCAGCTGAGACGGTTGAAATGCCTGAGGCAGGAACAGAAATGGCAGTACCATCGGTCCCCAAGGAGAAGAAAACGGTTGACATGCATTCAATCGAGAGGAATGTGAAAGAAAAAAAGAGAAAGGCAGCTGTGAAGGACAAGGACGATGACTTTGAGTATGACACATCGGAGATCCTGAAGACTTATGGAAAGAGAAGAAAGACTTCTGCACAGGAACAACCAAAGGAGAAAAAGAAAGCACAACCGAAGCTGCCAACAAAAATTCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

24.08

Weight (kDa)

8.43

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 143
AclWI GGATC 2 cut(s) 227, 526
AcsI RAATTY 2 cut(s) 188, 621
AcuI CTGAAG 2 cut(s) 74, 557
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 2 cut(s) 377, 450
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 4 cut(s) 50, 365, 488, 610
AluI AGCT 4 cut(s) 50, 365, 488, 610
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 2 cut(s) 227, 526
ApeKI GCWGC 4 cut(s) 227, 362, 485, 610
ApoI RAATTY 2 cut(s) 188, 621
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AseI ATTAAT 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 562
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 22
AvaII GGWCC 1 cut(s) 415
AxyI CCTNAGG 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 545
BbvI GCAGC 4 cut(s) 239, 374, 497, 597
BccI CCATC 3 cut(s) 124, 310, 418
BcgI CGANNNNNNTGC 2 cut(s) 393, 427
BciVI GTATCC 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 362
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 4 cut(s) 228, 363, 486, 611
BlsI GCNGC 4 cut(s) 229, 364, 487, 612
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 2 cut(s) 86, 417
BmsI GCATC 1 cut(s) 3
BpiI GAAGAC 1 cut(s) 545
BsaJI CCNNGG 2 cut(s) 221, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 206, 360
Bse21I CCTNAGG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 221, 420
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 2 cut(s) 357, 375
BseNI ACTGG 2 cut(s) 206, 360
BseXI GCAGC 4 cut(s) 239, 374, 497, 597
BsgI GTGCAG 1 cut(s) 552
Bsh1285I CGRYCG 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 362
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 445
Bsp143I GATC 4 cut(s) 26, 154, 232, 531
BspCNI CTCAG 2 cut(s) 358, 376
BspLI GGNNCC 2 cut(s) 86, 417
BspPI GGATC 2 cut(s) 227, 526
BsrI ACTGG 2 cut(s) 206, 360
BssECI CCNNGG 2 cut(s) 221, 420
BssMI GATC 4 cut(s) 26, 154, 232, 531
BssT1I CCWWGG 2 cut(s) 221, 420
Bst4CI ACNGT 2 cut(s) 373, 436
BstDEI CTNAG 2 cut(s) 366, 384
BstENI CCTNNNNNAGG 1 cut(s) 387
BstKTI GATC 4 cut(s) 29, 157, 235, 534
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 4 cut(s) 26, 154, 232, 531
BstMCI CGRYCG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 445
BstV1I GCAGC 4 cut(s) 239, 374, 497, 597
BstV2I GAAGAC 1 cut(s) 545
BstX2I RGATCY 2 cut(s) 232, 531
BstYI RGATCY 2 cut(s) 232, 531
Bsu36I CCTNAGG 1 cut(s) 384
BsuI GTATCC 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 415
Csp6I GTAC 1 cut(s) 407
CviAII CATG 1 cut(s) 442
CviJI RGCY 4 cut(s) 50, 365, 488, 610
CviKI_1 RGCY 4 cut(s) 50, 365, 488, 610
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 2 cut(s) 366, 384
DpnI GATC 4 cut(s) 28, 156, 234, 533
DpnII GATC 4 cut(s) 26, 154, 232, 531
Eco130I CCWWGG 2 cut(s) 221, 420
Eco47I GGWCC 1 cut(s) 415
Eco57I CTGAAG 2 cut(s) 74, 557
Eco81I CCTNAGG 1 cut(s) 384
EcoNI CCTNNNNNAGG 1 cut(s) 387
EcoT14I CCWWGG 2 cut(s) 221, 420
EcoT22I ATGCAT 2 cut(s) 247, 447
ErhI CCWWGG 2 cut(s) 221, 420
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 1 cut(s) 445
FaiI YATR 4 cut(s) 44, 443, 519, 546
FalI AAGNNNNNCTT 2 cut(s) 547, 579
FaqI GGGAC 1 cut(s) 401
FatI CATG 1 cut(s) 441
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 4 cut(s) 228, 363, 486, 611
Fsp4HI GCNGC 4 cut(s) 228, 363, 486, 611
GluI GCNGC 4 cut(s) 228, 363, 486, 611
Hin1II CATG 1 cut(s) 445
HincII GTYRAC 4 cut(s) 144, 211, 338, 439
HindII GTYRAC 4 cut(s) 144, 211, 338, 439
HinfI GANTC 3 cut(s) 167, 265, 320
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 4 cut(s) 144, 211, 338, 439
Hpy188I TCNGA 4 cut(s) 54, 325, 529, 627
Hpy188III TCNNGA 3 cut(s) 269, 454, 535
Hpy8I GTNNAC 4 cut(s) 144, 211, 338, 439
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 2 cut(s) 373, 436
HpyCH4V TGCA 5 cut(s) 16, 185, 245, 445, 569
HpyF3I CTNAG 2 cut(s) 366, 384
Hsp92II CATG 1 cut(s) 445
Kzo9I GATC 4 cut(s) 26, 154, 232, 531
Lsp1109I GCAGC 4 cut(s) 239, 374, 497, 597
LweI GCATC 1 cut(s) 3
MalI GATC 4 cut(s) 28, 156, 234, 533
MboI GATC 4 cut(s) 26, 154, 232, 531
MboII GAAGA 5 cut(s) 67, 227, 439, 550, 567
MflI RGATCY 2 cut(s) 232, 531
MluCI AATT 3 cut(s) 188, 237, 621
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 4 cut(s) 156, 280, 379, 450
Mph1103I ATGCAT 2 cut(s) 247, 447
MroXI GAANNNNTTC 1 cut(s) 562
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 365, 488
Mva1269I GAATGC 1 cut(s) 445
NdeII GATC 4 cut(s) 26, 154, 232, 531
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 2 cut(s) 86, 417
NsiI ATGCAT 2 cut(s) 247, 447
NspI RCATGY 1 cut(s) 445
PctI GAATGC 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 562
PfeI GAWTC 2 cut(s) 167, 320
PkrI GCNGC 4 cut(s) 229, 364, 487, 612
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PshBI ATTAAT 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 86, 417
PspPI GGNCC 1 cut(s) 415
PsuI RGATCY 2 cut(s) 232, 531
PvuII CAGCTG 2 cut(s) 365, 488
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
SalI GTCGAC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 4 cut(s) 228, 363, 486, 611
Sau3AI GATC 4 cut(s) 26, 154, 232, 531
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 1 cut(s) 274
SetI ASST 7 cut(s) 12, 52, 96, 337, 367, 490, 612
SfaNI GCATC 1 cut(s) 3
SinI GGWCC 1 cut(s) 415
Sse9I AATT 3 cut(s) 188, 237, 621
StyI CCWWGG 2 cut(s) 221, 420
TaaI ACNGT 2 cut(s) 373, 436
TaqI TCGA 3 cut(s) 143, 347, 453
TaqII GACCGA 2 cut(s) 161, 403
TasI AATT 3 cut(s) 188, 237, 621
TfiI GAWTC 2 cut(s) 167, 320
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 109
TseI GCWGC 4 cut(s) 227, 362, 485, 610
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 415
VspI ATTAAT 1 cut(s) 240
XagI CCTNNNNNAGG 1 cut(s) 387
XapI RAATTY 2 cut(s) 188, 621
XceI RCATGY 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 562
Zsp2I ATGCAT 2 cut(s) 247, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.