RchiOBHm_Chr4g0421591
MYB Family

Protein ALWAYS EARLY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000060
Physical Location & Seq
Forward (+)
47260326 .. 47267314
6989 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39123

Sequence Viewer

Length: 2685 bp
ATGGCCCCGGTAAGGAAAACAAAGGGTGTGAATAAGAGGTTTCCTTATATCAATGAGGTTGCTTCTAACAAATATGGAGATAATGCTAACAAGAACAAGCAGAAAAAGAGAAAGATGTCTGACATGTTAGGGCCTCAATGGACCACTGAAGAGCTAAAGCACTTTTATGAAGGATATCGCAAGTATGGAAAAGACTGGATGAAGGTTGCTTCAGTAGTACGTCACCGATCTTTGGAGAATGTAGAGGCCCTTTACACTATGAATAGGGCCTACTTATCTCTTCCCGAGGGTGCTGCTTCTGTGATTGGACTAACAGCAATGATGTGTGACTATTACTCTATGCTGGAAAGAAGTGACAGTGAACAAAACTGCATTGACAATGCAGGAACCCCCAGAAAGTCTCAAAAGCTTGCAAGAGGGAAATTACGGAATGACGCCTCAAAAGGATTGGAAGGACATATTCTAGATATTTCTCAGTCCCGTTCAATTGCATCAGATGGCTGCTTGTCACTGCTGAAAAATAGGCGCACTGATGAAGACTCTTCCTTTGATGCGCTACTTACTCTGGCAGATCTGTCCTTGAGGATGCCTGAAGCAACTGCTGAAATGGAATCATCTGCACTTGTCGAGGAAGAAAACTTCAACATTGCTAAGAAGTCTAAACTCAAAGGGAATCATTCAGTTACTATGGTTGAAGACACTGCTTTGAAAACATCTCAGCTGGGAAAACTCAAAGAGGGAGTTCAACAGTCTGACACTGGAATACAAAAAAGAAAACAGAAGTCGCCAGTTAAATTGCAGATAAATGAGAATGAAGCTCAGACCGAGTTTCCTTGGAGTGACAATCAAATGATTGAGATTCTCAAAAGCAGCTTCGATTCAAGGATTCTCCGGCTTTGGATTCGTCGAAATAAAATGGCCAGACCGAAATTCAAAATTATAAGCTCTAGTTCCGAAGAATTTAGGGAAGACACACAAAGTCAAGAGTCTTTGGATGAAGAAACTCCGACTTCATTTCAAAAAACACTACAACATGAGATGACAAAAATAAAGCATAGGAAGAAAAAACAAGCAGAGGACACTGATGATGAAGAAACAGCAGAGGAAGAAACAGAAGATGAAGACGAGGAAGAAACAACAAGTAGATATTGTGTAAAGAAAAGAAGTCAGAAGAGGAATACAACAGATGATGAAGATGAGGAATACGATCAAAAAGAAAAGAAGAAGAGAAAAGTTCAATTGCCAAAGACAAAAGAGCAGAAGGCAAAAAAACACGGAAGGAAGAAGAAAGAAGAAAAAGAGGAAACAGAGAAGAAAGAAGAAAACATAGCCAAGATTGATTGGAGGCAGCAGAAATGCACTTTGAGTGCGTTTTGGAGACTAATTGATGCGCACAAGAGCAGAATACCAGCAGCAACTTGGGAAATATTAAGGCATACCGTATTCTGGGGGATGATAGAACCTTTCCTTGAGCGAAAGCTTACTGAAAATCAGCTGCATAAGCATGAGGCAGACCTGGAAATAATTATGAGATATTTTGACAAGAAGAAGAACAAGTTCATATTTGGCGAAAAGGAAATGGAAATAACAGTGCAGGATGTAAAGACATTGTTTGACCTGCCTACTGAAGGCATATATATGGAACTGAACAAGAAGTTGAGCAAGGAGGAGCGTAAAGAGTCTGCAATCTTTGACACGAATGTGAAGAAAGATTCTGTGCTCAAAACAGAAGTAGAGAAGAAATTGGTAAAGGAGCTGACCAAGGAGAAGAAAGAAAAAGATTTGAAGAAACAGCAAGATCCCAAAAAAATAGCCTCACTCATCATCATGTACTTGTTCGCTGCCTTCTTCTTTAGTAGAACTGCAACAAATATCACTTGGGATTTGATCAGTGTCTGTGAAGACATTGACAACATCAACAAGTTCAATTGGTCGAGGATGATTATTGATTTTCTACTAGATGGAATCCAGAAGTACCAAAAAGACAAGCCGACAACTCTGTCCGGTTGCCTACTTCTAATCTATTACTGGTTCCTCGAGAAGACTAAGATCAAGAACTGGATTCCCGGGAAGGAGACAGAAACACCACGCTTTGTGAGATGGTCAATAAAGGAGATCTTTAACTTGCAAGAGGTTTACAAGAATCCAGGTTGGCCAGAGCGCTTAATCAAGGACGGACCGTGGTTGGAAAAGGAATGGCTGGAAGAGTTGGAATTTGAGGAGAAGATTGAGGAGCAAGAGACACCAAGCTTCAACAATTGGGTTCCTCAAGCTAGCCAAAGAGAAGAAGAAGAAATAATAAGGCTGACGGGAAACATGAGAGTAATTATAGAGGAGCTGGAGACAGTGCTCAGAGAGGAGCCTACAAGGGAAAACATGGAGGAGAAATTGAAAAGGCTGGCAGAAGGAAATGAGCAACTCTCAAAACAAAATAAAGAAATGTGGACCAAGCTGAAAATAGCGGACGAAATGATAGAAAGTATGGAGAAGAAAAAGCATGATCTGTTATTAGAAACGAGGGCAAGCAAAAACCAGATTGCAGCTCTGTACAAATTGCTAGCGAAAGCAAAACACTCGGGGAATGCGGGAGCTAGTCAGCAAAAAGAAAGTCAGCTACAGATTGTACAAATATCAACAGAGGAAGAGCAAGTAAGACAAGCTGAATTTGAAGACAACAGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
DIRP Myb_DNA-binding

Protein Analysis

894

Amino Acids

104.92

Weight (kDa)

7.53

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 496 - 705 1.1e-09 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 941
AasI GACNNNNNNGTC 1 cut(s) 1999
Acc16I TGCGCA 1 cut(s) 1392
Acc36I ACCTGC 1 cut(s) 1626
AciI CCGC 2 cut(s) 2462, 2585
AclWI GGATC 1 cut(s) 1793
AcoI YGGCCR 2 cut(s) 918, 2153
AcsI RAATTY 4 cut(s) 929, 959, 2213, 2663
AcuI CTGAAG 4 cut(s) 168, 195, 612, 1647
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 5 cut(s) 219, 1832, 1976, 2549, 2625
AfeI AGCGCT 1 cut(s) 2162
AfiI CCNNNNNNNGG 4 cut(s) 12, 232, 1446, 1628
AflIII ACRYGT 1 cut(s) 123
AjnI CCWGG 2 cut(s) 1515, 2146
AleI CACNNNNGTG 1 cut(s) 1700
Alw21I GWGCWC 2 cut(s) 1722, 2352
Alw26I GTCTC 5 cut(s) 405, 1372, 2069, 2234, 2336
AlwI GGATC 1 cut(s) 1793
AlwNI CAGNNNCTG 1 cut(s) 1896
Ama87I CYCGRG 4 cut(s) 284, 2036, 2066, 2575
Aor51HI AGCGCT 1 cut(s) 2162
AoxI GGCC 6 cut(s) 3, 131, 246, 267, 918, 2153
ApeKI GCWGC 8 cut(s) 293, 501, 870, 1348, 1412, 1495, 1841, 2540
ApoI RAATTY 4 cut(s) 929, 959, 2213, 2663
ArsI GACNNNNNNTTYG 4 cut(s) 530, 562, 2593, 2625
Asp700I GAANNNNTTC 1 cut(s) 1556
AspLEI GCGC 4 cut(s) 528, 556, 1393, 2163
AspS9I GGNCC 7 cut(s) 4, 131, 141, 247, 267, 2177, 2445
AsuC2I CCSGG 3 cut(s) 8, 2067, 2068
AsuHPI GGTGA 1 cut(s) 215
AsuNHI GCTAGC 2 cut(s) 2273, 2557
AvaI CYCGRG 4 cut(s) 284, 2036, 2066, 2575
AvaII GGWCC 3 cut(s) 141, 2177, 2445
BalI TGGCCA 2 cut(s) 920, 2155
BbsI GAAGAC 7 cut(s) 543, 702, 975, 1128, 1908, 2048, 2676
Bbv12I GWGCWC 2 cut(s) 1722, 2352
BbvI GCAGC 8 cut(s) 280, 488, 882, 1360, 1424, 1482, 1828, 2552
BccI CCATC 3 cut(s) 491, 1955, 2094
BcgI CGANNNNNNTGC 4 cut(s) 275, 309, 2556, 2590
BciT130I CCWGG 2 cut(s) 1517, 2148
BclI TGATCA 1 cut(s) 1887
BcnI CCSGG 3 cut(s) 8, 2067, 2068
BcoDI GTCTC 5 cut(s) 405, 1372, 2069, 2234, 2336
BfaI CTAG 6 cut(s) 464, 948, 1958, 2274, 2558, 2592
BfmI CTRYAG 1 cut(s) 2615
BfoI RGCGCY 1 cut(s) 2164
BfuAI ACCTGC 1 cut(s) 1626
BglII AGATCT 2 cut(s) 571, 2115
BisI GCNGC 8 cut(s) 294, 502, 871, 1349, 1413, 1496, 1842, 2541
BlsI GCNGC 8 cut(s) 295, 503, 872, 1350, 1414, 1497, 1843, 2542
Bme1390I CCNGG 5 cut(s) 8, 1517, 2067, 2068, 2148
Bme18I GGWCC 3 cut(s) 141, 2177, 2445
BmeT110I CYCGRG 4 cut(s) 284, 2036, 2066, 2575
BmgT120I GGNCC 7 cut(s) 4, 131, 141, 247, 267, 2177, 2445
BmiI GGNNCC 5 cut(s) 6, 388, 2033, 2265, 2361
BmrFI CCNGG 5 cut(s) 8, 1517, 2067, 2068, 2148
BmsI GCATC 4 cut(s) 500, 541, 576, 1378
BmtI GCTAGC 2 cut(s) 2277, 2561
BpiI GAAGAC 7 cut(s) 543, 702, 975, 1128, 1908, 2048, 2676
BplI GAGNNNNNCTC 2 cut(s) 2405, 2437
BpmI CTGGAG 1 cut(s) 2360
BpuEI CTTGAG 3 cut(s) 601, 1490, 2253
BpuMI CCSGG 3 cut(s) 8, 2067, 2068
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 6 cut(s) 6, 285, 833, 1761, 2066, 2180
BsaWI WCCGGW 1 cut(s) 2003
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 232, 1446, 1628
Bse1I ACTGG 5 cut(s) 200, 763, 788, 2033, 2063
Bse3DI GCAATG 2 cut(s) 324, 645
BseBI CCWGG 2 cut(s) 1517, 2148
BseDI CCNNGG 6 cut(s) 6, 285, 833, 1761, 2066, 2180
BseGI GGATG 6 cut(s) 204, 591, 1000, 1458, 1603, 1944
BseLI CCNNNNNNNGG 4 cut(s) 12, 232, 1446, 1628
BseMI GCAATG 2 cut(s) 324, 645
BseMII CTCAG 4 cut(s) 488, 731, 833, 2365
BseNI ACTGG 5 cut(s) 200, 763, 788, 2033, 2063
BseRI GAGGAG 6 cut(s) 1682, 2234, 2246, 2348, 2372, 2396
BseXI GCAGC 8 cut(s) 280, 488, 882, 1360, 1424, 1482, 1828, 2552
BseYI CCCAGC 1 cut(s) 721
BsgI GTGCAG 2 cut(s) 603, 1613
BshFI GGCC 6 cut(s) 5, 133, 248, 269, 920, 2155
BsiHKAI GWGCWC 2 cut(s) 1722, 2352
BsiHKCI CYCGRG 4 cut(s) 284, 2036, 2066, 2575
BsiSI CCGG 4 cut(s) 8, 892, 2004, 2067
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 4 cut(s) 12, 232, 1446, 1628
BsmAI GTCTC 5 cut(s) 405, 1372, 2069, 2234, 2336
BsmFI GGGAC 1 cut(s) 463
BsmI GAATGC 1 cut(s) 2587
BsnI GGCC 6 cut(s) 5, 133, 248, 269, 920, 2155
BsoBI CYCGRG 4 cut(s) 284, 2036, 2066, 2575
Bsp1286I GDGCHC 2 cut(s) 1722, 2352
Bsp1407I TGTACA 2 cut(s) 2547, 2623
Bsp143I GATC 8 cut(s) 227, 571, 1207, 1798, 1887, 2049, 2115, 2500
BspACI CCGC 2 cut(s) 2462, 2585
BspANI GGCC 6 cut(s) 5, 133, 248, 269, 920, 2155
BspCNI CTCAG 4 cut(s) 487, 730, 832, 2364
BspLI GGNNCC 5 cut(s) 6, 388, 2033, 2265, 2361
BspMI ACCTGC 1 cut(s) 1626
BspOI GCTAGC 2 cut(s) 2277, 2561
BspPI GGATC 1 cut(s) 1793
BspQI GCTCTTC 2 cut(s) 144, 2637
BsrDI GCAATG 2 cut(s) 324, 645
BsrGI TGTACA 2 cut(s) 2547, 2623
BsrI ACTGG 5 cut(s) 200, 763, 788, 2033, 2063
BssECI CCNNGG 6 cut(s) 6, 285, 833, 1761, 2066, 2180
BssMI GATC 8 cut(s) 227, 571, 1207, 1798, 1887, 2049, 2115, 2500
BssNI GRCGYC 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 833, 1761
Bst2UI CCWGG 2 cut(s) 1517, 2148
Bst4CI ACNGT 6 cut(s) 359, 750, 1441, 1591, 2181, 2347
Bst6I CTCTTC 7 cut(s) 144, 285, 547, 1166, 1220, 2199, 2637
BstACI GRCGYC 1 cut(s) 435
BstAUI TGTACA 2 cut(s) 2547, 2623
BstC8I GCNNGC 5 cut(s) 411, 2275, 2400, 2524, 2559
BstDEI CTNAG 6 cut(s) 474, 651, 717, 819, 2046, 2351
BstDSI CCRYGG 1 cut(s) 2180
BstENI CCTNNNNNAGG 1 cut(s) 1626
BstF5I GGATG 6 cut(s) 204, 591, 1000, 1458, 1603, 1944
BstH2I RGCGCY 1 cut(s) 2164
BstHHI GCGC 4 cut(s) 528, 556, 1393, 2163
BstKTI GATC 8 cut(s) 230, 574, 1210, 1801, 1890, 2052, 2118, 2503
BstMAI GTCTC 5 cut(s) 405, 1372, 2069, 2234, 2336
BstMBI GATC 8 cut(s) 227, 571, 1207, 1798, 1887, 2049, 2115, 2500
BstMWI GCNNNNNNNGC 1 cut(s) 1501
BstNI CCWGG 2 cut(s) 1517, 2148
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 5 cut(s) 6, 1515, 2065, 2066, 2146
BstSFI CTRYAG 1 cut(s) 2615
BstV1I GCAGC 8 cut(s) 280, 488, 882, 1360, 1424, 1482, 1828, 2552
BstV2I GAAGAC 7 cut(s) 543, 702, 975, 1128, 1908, 2048, 2676
BstX2I RGATCY 3 cut(s) 571, 1798, 2115
BstYI RGATCY 3 cut(s) 571, 1798, 2115
BsuRI GGCC 6 cut(s) 5, 133, 248, 269, 920, 2155
BtgI CCRYGG 1 cut(s) 2180
BtsCI GGATG 6 cut(s) 204, 591, 1000, 1458, 1603, 1944
BtsI GCAGTG 2 cut(s) 509, 699
BveI ACCTGC 1 cut(s) 1626
Cac8I GCNNGC 5 cut(s) 411, 2275, 2400, 2524, 2559
CaiI CAGNNNCTG 1 cut(s) 1896
CfoI GCGC 4 cut(s) 528, 556, 1393, 2163
Cfr13I GGNCC 7 cut(s) 4, 131, 141, 247, 267, 2177, 2445
Cfr9I CCCGGG 1 cut(s) 2066
CpoI CGGWCCG 1 cut(s) 2177
CseI GACGC 1 cut(s) 443
Csp6I GTAC 5 cut(s) 218, 1831, 1975, 2548, 2624
CspI CGGWCCG 1 cut(s) 2177
CviAII CATG 7 cut(s) 124, 1034, 1505, 1828, 2317, 2377, 2498
CviQI GTAC 5 cut(s) 218, 1831, 1975, 2548, 2624
DdeI CTNAG 6 cut(s) 474, 651, 717, 819, 2046, 2351
DpnI GATC 8 cut(s) 229, 573, 1209, 1800, 1889, 2051, 2117, 2502
DpnII GATC 8 cut(s) 227, 571, 1207, 1798, 1887, 2049, 2115, 2500
DrdI GACNNNNNNGTC 1 cut(s) 1999
DseDI GACNNNNNNGTC 1 cut(s) 1999
EaeI YGGCCR 2 cut(s) 918, 2153
Eam1104I CTCTTC 7 cut(s) 144, 285, 547, 1166, 1220, 2199, 2637
EarI CTCTTC 7 cut(s) 144, 285, 547, 1166, 1220, 2199, 2637
Eco130I CCWWGG 2 cut(s) 833, 1761
Eco32I GATATC 1 cut(s) 176
Eco47I GGWCC 3 cut(s) 141, 2177, 2445
Eco47III AGCGCT 1 cut(s) 2162
Eco57I CTGAAG 4 cut(s) 168, 195, 612, 1647
Eco88I CYCGRG 4 cut(s) 284, 2036, 2066, 2575
EcoNI CCTNNNNNAGG 1 cut(s) 1626
EcoO109I RGGNCCY 3 cut(s) 131, 247, 267
EcoRII CCWGG 2 cut(s) 1515, 2146
EcoRV GATATC 1 cut(s) 176
EcoT14I CCWWGG 2 cut(s) 833, 1761
ErhI CCWWGG 2 cut(s) 833, 1761
FaeI CATG 7 cut(s) 127, 1037, 1508, 1831, 2320, 2380, 2501
FalI AAGNNNNNCTT 2 cut(s) 2102, 2134
FaqI GGGAC 1 cut(s) 463
FatI CATG 7 cut(s) 123, 1033, 1504, 1827, 2316, 2376, 2497
FauI CCCGC 1 cut(s) 2578
FbaI TGATCA 1 cut(s) 1887
Fnu4HI GCNGC 8 cut(s) 294, 502, 871, 1349, 1413, 1496, 1842, 2541
FokI GGATG 6 cut(s) 211, 598, 1007, 1465, 1610, 1951
Fsp4HI GCNGC 8 cut(s) 294, 502, 871, 1349, 1413, 1496, 1842, 2541
FspAI RTGCGCAY 1 cut(s) 1392
FspBI CTAG 6 cut(s) 464, 948, 1958, 2274, 2558, 2592
FspI TGCGCA 1 cut(s) 1392
GlaI GCGC 4 cut(s) 527, 555, 1392, 2162
GluI GCNGC 8 cut(s) 294, 502, 871, 1349, 1413, 1496, 1842, 2541
GsaI CCCAGC 1 cut(s) 725
GsuI CTGGAG 1 cut(s) 2360
HaeII RGCGCY 1 cut(s) 2164
HaeIII GGCC 6 cut(s) 5, 133, 248, 269, 920, 2155
HapII CCGG 4 cut(s) 8, 892, 2004, 2067
HgaI GACGC 1 cut(s) 443
HhaI GCGC 4 cut(s) 528, 556, 1393, 2163
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 7 cut(s) 127, 1037, 1508, 1831, 2320, 2380, 2501
Hin6I GCGC 4 cut(s) 526, 554, 1391, 2161
HinP1I GCGC 4 cut(s) 526, 554, 1391, 2161
HindIII AAGCTT 3 cut(s) 407, 1478, 2248
HpaII CCGG 4 cut(s) 8, 892, 2004, 2067
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 3 cut(s) 362, 2137, 2445
Hpy188I TCNGA 8 cut(s) 121, 496, 754, 822, 955, 1008, 1170, 2354
Hpy188III TCNNGA 6 cut(s) 284, 464, 983, 1969, 2038, 2053
Hpy8I GTNNAC 3 cut(s) 362, 2137, 2445
Hpy99I CGWCG 1 cut(s) 909
HpyAV CCTTC 9 cut(s) 164, 196, 446, 1255, 1272, 1622, 1855, 2065, 2399
HpyCH4III ACNGT 6 cut(s) 359, 750, 1441, 1591, 2181, 2347
HpyCH4IV ACGT 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 1501
HpyF3I CTNAG 6 cut(s) 474, 651, 717, 819, 2046, 2351
HpySE526I ACGT 1 cut(s) 220
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 7 cut(s) 127, 1037, 1508, 1831, 2320, 2380, 2501
HspAI GCGC 4 cut(s) 526, 554, 1391, 2161
Ksp22I TGATCA 1 cut(s) 1887
Kzo9I GATC 8 cut(s) 227, 571, 1207, 1798, 1887, 2049, 2115, 2500
LguI GCTCTTC 2 cut(s) 144, 2637
LmnI GCTCC 6 cut(s) 1669, 1753, 2233, 2335, 2359, 2588
Lsp1109I GCAGC 8 cut(s) 280, 488, 882, 1360, 1424, 1482, 1828, 2552
LweI GCATC 4 cut(s) 500, 541, 576, 1378
MaeI CTAG 6 cut(s) 464, 948, 1958, 2274, 2558, 2592
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 6 cut(s) 221, 326, 353, 507, 682, 839
MalI GATC 8 cut(s) 229, 573, 1209, 1800, 1889, 2051, 2117, 2502
MboI GATC 8 cut(s) 227, 571, 1207, 1798, 1887, 2049, 2115, 2500
MfeI CAATTG 4 cut(s) 486, 1238, 1927, 2257
MflI RGATCY 3 cut(s) 571, 1798, 2115
MhlI GDGCHC 2 cut(s) 1722, 2352
MlsI TGGCCA 2 cut(s) 920, 2155
MluNI TGGCCA 2 cut(s) 920, 2155
MlyI GAGTC 3 cut(s) 533, 995, 1688
MmeI TCCRAC 3 cut(s) 1031, 2166, 2190
Mox20I TGGCCA 2 cut(s) 920, 2155
MroXI GAANNNNTTC 1 cut(s) 1556
MscI TGGCCA 2 cut(s) 920, 2155
MseI TTAA 4 cut(s) 792, 1430, 2121, 2165
MslI CAYNNNNRTG 5 cut(s) 165, 1503, 1637, 1700, 1826
Msp20I TGGCCA 2 cut(s) 920, 2155
MspA1I CMGCKG 2 cut(s) 721, 1495
MspI CCGG 4 cut(s) 8, 892, 2004, 2067
MspR9I CCNGG 5 cut(s) 8, 1517, 2067, 2068, 2148
MunI CAATTG 4 cut(s) 486, 1238, 1927, 2257
Mva1269I GAATGC 1 cut(s) 2587
MvaI CCWGG 2 cut(s) 1517, 2148
MwoI GCNNNNNNNGC 1 cut(s) 1501
NciI CCSGG 3 cut(s) 8, 2067, 2068
NdeII GATC 8 cut(s) 227, 571, 1207, 1798, 1887, 2049, 2115, 2500
NheI GCTAGC 2 cut(s) 2273, 2557
NlaIII CATG 7 cut(s) 127, 1037, 1508, 1831, 2320, 2380, 2501
NlaIV GGNNCC 5 cut(s) 6, 388, 2033, 2265, 2361
NmuCI GTSAC 5 cut(s) 221, 326, 353, 507, 839
NsbI TGCGCA 1 cut(s) 1392
NspI RCATGY 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 1700
PaeR7I CTCGAG 1 cut(s) 2036
PciI ACATGT 1 cut(s) 123
PciSI GCTCTTC 2 cut(s) 144, 2637
PctI GAATGC 1 cut(s) 2587
PdmI GAANNNNTTC 1 cut(s) 1556
PkrI GCNGC 8 cut(s) 295, 503, 872, 1350, 1414, 1497, 1843, 2542
PleI GAGTC 3 cut(s) 533, 994, 1687
PpsI GAGTC 3 cut(s) 533, 994, 1687
PscI ACATGT 1 cut(s) 123
PsiI TTATAA 1 cut(s) 941
Psp6I CCWGG 2 cut(s) 1515, 2146
PspFI CCCAGC 1 cut(s) 721
PspGI CCWGG 2 cut(s) 1515, 2146
PspN4I GGNNCC 5 cut(s) 6, 388, 2033, 2265, 2361
PspPI GGNCC 7 cut(s) 4, 131, 141, 247, 267, 2177, 2445
PstNI CAGNNNCTG 1 cut(s) 1896
PsuI RGATCY 3 cut(s) 571, 1798, 2115
PvuII CAGCTG 2 cut(s) 721, 1495
RsaI GTAC 5 cut(s) 219, 1832, 1976, 2549, 2625
RsaNI GTAC 5 cut(s) 218, 1831, 1975, 2548, 2624
RseI CAYNNNNRTG 5 cut(s) 165, 1503, 1637, 1700, 1826
Rsr2I CGGWCCG 1 cut(s) 2177
RsrII CGGWCCG 1 cut(s) 2177
SapI GCTCTTC 2 cut(s) 144, 2637
SaqAI TTAA 4 cut(s) 792, 1430, 2121, 2165
SatI GCNGC 8 cut(s) 294, 502, 871, 1349, 1413, 1496, 1842, 2541
Sau3AI GATC 8 cut(s) 227, 571, 1207, 1798, 1887, 2049, 2115, 2500
Sau96I GGNCC 7 cut(s) 4, 131, 141, 247, 267, 2177, 2445
SchI GAGTC 3 cut(s) 533, 995, 1688
ScrFI CCNGG 5 cut(s) 8, 1517, 2067, 2068, 2148
SduI GDGCHC 2 cut(s) 1722, 2352
SfaNI GCATC 4 cut(s) 500, 541, 576, 1378
SfcI CTRYAG 1 cut(s) 2615
Sfr274I CTCGAG 1 cut(s) 2036
SinI GGWCC 3 cut(s) 141, 2177, 2445
SlaI CTCGAG 1 cut(s) 2036
SmaI CCCGGG 1 cut(s) 2068
SmiMI CAYNNNNRTG 5 cut(s) 165, 1503, 1637, 1700, 1826
SmlI CTYRAG 4 cut(s) 580, 1469, 2036, 2268
SmoI CTYRAG 4 cut(s) 580, 1469, 2036, 2268
SsiI CCGC 2 cut(s) 2462, 2585
SspI AATATT 1 cut(s) 1428
SspMI CTAG 6 cut(s) 464, 948, 1958, 2274, 2558, 2592
StyD4I CCNGG 5 cut(s) 6, 1515, 2065, 2066, 2146
StyI CCWWGG 2 cut(s) 833, 1761
TaaI ACNGT 6 cut(s) 359, 750, 1441, 1591, 2181, 2347
TaiI ACGT 1 cut(s) 223
TaqI TCGA 5 cut(s) 627, 876, 907, 1934, 2037
TaqII GACCGA 2 cut(s) 839, 940
TatI WGTACW 3 cut(s) 1830, 2547, 2623
Tru1I TTAA 4 cut(s) 792, 1430, 2121, 2165
Tru9I TTAA 4 cut(s) 792, 1430, 2121, 2165
TseFI GTSAC 5 cut(s) 221, 326, 353, 507, 839
TseI GCWGC 8 cut(s) 293, 501, 870, 1348, 1412, 1495, 1841, 2540
Tsp45I GTSAC 5 cut(s) 221, 326, 353, 507, 839
TspGWI ACGGA 3 cut(s) 442, 1290, 2190
TspMI CCCGGG 1 cut(s) 2066
VpaK11BI GGWCC 3 cut(s) 141, 2177, 2445
XagI CCTNNNNNAGG 1 cut(s) 1626
XapI RAATTY 4 cut(s) 929, 959, 2213, 2663
XbaI TCTAGA 1 cut(s) 463
XceI RCATGY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 1416
XhoI CTCGAG 1 cut(s) 2036
XmaI CCCGGG 1 cut(s) 2066
XmnI GAANNNNTTC 1 cut(s) 1556
XspI CTAG 6 cut(s) 464, 948, 1958, 2274, 2558, 2592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.