Rorug03G0339100

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
40314911 .. 40317191
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0339100.1

Sequence Viewer

Length: 597 bp
ATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTATAGACAAAGAAGAGGTTTACTTGAATCTCGTACTTGAATTTGTTCCTGAAATTGTTTACCATATCGCAAGGAACTATAGCAGGATCAACCAGCGGATGCCTTTAATATATGTTAAACTTTATACCTACCAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCGTGACATCAAGCCTCAAAATTTACTTGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCTTGGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGATTGTGCAAATGAGTCGATTGATGCCCAGAAAGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAACACTGTCTTATCCCTTGGAGGCATCTGCTCATATGGACCAGTTTCTCTTCTCTCTGGTCTTAACCCTCGTCCATTACACTTGTTTCTCCATTTCTTTGCAGCTGCCATCTATGGTGTTGGCCACTTAA

Protein Analysis

198

Amino Acids

22.64

Weight (kDa)

6.11

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 111 1.8e-21 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 109 4.9e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 151
AclWI GGATC 2 cut(s) 21, 149
AcoI YGGCCR 1 cut(s) 588
AcsI RAATTY 2 cut(s) 95, 256
AfaI GTAC 1 cut(s) 90
AgsI TTSAA 4 cut(s) 54, 82, 95, 395
AluBI AGCT 4 cut(s) 286, 349, 358, 571
AluI AGCT 4 cut(s) 286, 349, 358, 571
AlwI GGATC 2 cut(s) 21, 149
AoxI GGCC 1 cut(s) 588
ApeKI GCWGC 3 cut(s) 355, 568, 571
ApoI RAATTY 2 cut(s) 95, 256
Asp700I GAANNNNTTC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 227
AvaII GGWCC 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 202
BalI TGGCCA 1 cut(s) 590
BbvI GCAGC 3 cut(s) 367, 558, 580
BccI CCATC 2 cut(s) 449, 583
BcgI CGANNNNNNTGC 2 cut(s) 393, 427
BciVI GTATCC 1 cut(s) 457
BfmI CTRYAG 2 cut(s) 57, 133
BfuI GTATCC 1 cut(s) 457
BglII AGATCT 1 cut(s) 189
BisI GCNGC 3 cut(s) 356, 569, 572
BlsI GCNGC 3 cut(s) 357, 570, 573
Bme18I GGWCC 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 505
BmsI GCATC 4 cut(s) 144, 237, 409, 500
BpuEI CTTGAG 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 483
Bse1I ACTGG 1 cut(s) 508
Bse3DI GCAATG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 508
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 3 cut(s) 367, 558, 580
BshFI GGCC 1 cut(s) 590
BsnI GGCC 1 cut(s) 590
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 3 cut(s) 13, 141, 189
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 590
BspPI GGATC 2 cut(s) 21, 149
BsrDI GCAATG 1 cut(s) 40
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 3 cut(s) 13, 141, 189
BssT1I CCWWGG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 239, 474
Bst6I CTCTTC 2 cut(s) 63, 521
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 3 cut(s) 16, 144, 192
BstMBI GATC 3 cut(s) 13, 141, 189
BstMWI GCNNNNNNNGC 1 cut(s) 355
BstSFI CTRYAG 2 cut(s) 57, 133
BstSLI GKGCMC 1 cut(s) 202
BstV1I GCAGC 3 cut(s) 367, 558, 580
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 1 cut(s) 590
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 505
Csp6I GTAC 1 cut(s) 89
CviJI RGCY 7 cut(s) 250, 286, 328, 349, 358, 571, 590
CviKI_1 RGCY 7 cut(s) 250, 286, 328, 349, 358, 571, 590
CviQI GTAC 1 cut(s) 89
DpnI GATC 3 cut(s) 15, 143, 191
DpnII GATC 3 cut(s) 13, 141, 189
EaeI YGGCCR 1 cut(s) 588
Eam1104I CTCTTC 2 cut(s) 63, 521
EarI CTCTTC 2 cut(s) 63, 521
Eco130I CCWWGG 1 cut(s) 483
Eco32I GATATC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 505
EcoRV GATATC 1 cut(s) 368
EcoT14I CCWWGG 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 483
FauNDI CATATG 1 cut(s) 501
Fnu4HI GCNGC 3 cut(s) 356, 569, 572
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 3 cut(s) 356, 569, 572
GluI GCNGC 3 cut(s) 356, 569, 572
HaeIII GGCC 1 cut(s) 590
HinfI GANTC 2 cut(s) 82, 410
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 76, 115
Hpy188III TCNNGA 3 cut(s) 104, 319, 392
Hpy8I GTNNAC 2 cut(s) 76, 115
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 2 cut(s) 239, 474
HpyCH4V TGCA 5 cut(s) 4, 311, 355, 404, 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 355
Kzo9I GATC 3 cut(s) 13, 141, 189
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 8 cut(s) 117, 124, 161, 200, 342, 437, 509, 521
Lsp1109I GCAGC 3 cut(s) 367, 558, 580
LweI GCATC 4 cut(s) 144, 237, 409, 500
MaeIII GTNAC 2 cut(s) 233, 239
MalI GATC 3 cut(s) 15, 143, 191
MboI GATC 3 cut(s) 13, 141, 189
MboII GAAGA 3 cut(s) 80, 407, 508
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 202
MlsI TGGCCA 1 cut(s) 590
MluCI AATT 5 cut(s) 95, 108, 256, 336, 374
MluNI TGGCCA 1 cut(s) 590
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 4 cut(s) 64, 261, 481, 545
Mox20I TGGCCA 1 cut(s) 590
MroXI GAANNNNTTC 1 cut(s) 99
MscI TGGCCA 1 cut(s) 590
MseI TTAA 4 cut(s) 161, 171, 530, 595
Msp20I TGGCCA 1 cut(s) 590
MspA1I CMGCKG 3 cut(s) 151, 286, 571
MwoI GCNNNNNNNGC 1 cut(s) 355
NdeI CATATG 1 cut(s) 501
NdeII GATC 3 cut(s) 13, 141, 189
NmuCI GTSAC 2 cut(s) 233, 239
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 3 cut(s) 357, 570, 573
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PspPI GGNCC 1 cut(s) 505
PsuI RGATCY 1 cut(s) 189
PvuII CAGCTG 2 cut(s) 286, 571
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SaqAI TTAA 4 cut(s) 161, 171, 530, 595
SatI GCNGC 3 cut(s) 356, 569, 572
Sau3AI GATC 3 cut(s) 13, 141, 189
Sau96I GGNCC 1 cut(s) 505
SchI GAGTC 1 cut(s) 419
SduI GDGCHC 1 cut(s) 202
SetI ASST 6 cut(s) 75, 185, 288, 351, 360, 573
SfaNI GCATC 4 cut(s) 144, 237, 409, 500
SfcI CTRYAG 2 cut(s) 57, 133
SinI GGWCC 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 5 cut(s) 95, 108, 256, 336, 374
SsiI CCGC 1 cut(s) 151
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 2 cut(s) 239, 474
TaqI TCGA 1 cut(s) 413
TasI AATT 5 cut(s) 95, 108, 256, 336, 374
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 4 cut(s) 161, 171, 530, 595
Tru9I TTAA 4 cut(s) 161, 171, 530, 595
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 2 cut(s) 233, 239
TseI GCWGC 3 cut(s) 355, 568, 571
Tsp45I GTSAC 2 cut(s) 233, 239
TspRI CASTG 1 cut(s) 477
VpaK11BI GGWCC 1 cut(s) 505
XapI RAATTY 2 cut(s) 95, 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.