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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 24 |
| AciI | CCGC | 3 cut(s) | 351, 365, 397 |
| AcuI | CTGAAG | 1 cut(s) | 246 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 284, 360 |
| AjiI | CACGTC | 1 cut(s) | 486 |
| AjnI | CCWGG | 1 cut(s) | 59 |
| AluBI | AGCT | 2 cut(s) | 393, 471 |
| AluI | AGCT | 2 cut(s) | 393, 471 |
| Alw26I | GTCTC | 1 cut(s) | 60 |
| AoxI | GGCC | 2 cut(s) | 362, 421 |
| ApeKI | GCWGC | 1 cut(s) | 188 |
| AspS9I | GGNCC | 1 cut(s) | 421 |
| AxyI | CCTNAGG | 1 cut(s) | 283 |
| BbvI | GCAGC | 1 cut(s) | 200 |
| BccI | CCATC | 1 cut(s) | 204 |
| BciT130I | CCWGG | 1 cut(s) | 61 |
| BcoDI | GTCTC | 1 cut(s) | 60 |
| BfaI | CTAG | 1 cut(s) | 50 |
| BglII | AGATCT | 1 cut(s) | 94 |
| BisI | GCNGC | 2 cut(s) | 189, 365 |
| BlsI | GCNGC | 2 cut(s) | 190, 366 |
| Bme1390I | CCNGG | 1 cut(s) | 61 |
| BmgBI | CACGTC | 1 cut(s) | 486 |
| BmgT120I | GGNCC | 1 cut(s) | 421 |
| BmrFI | CCNGG | 1 cut(s) | 61 |
| BmrI | ACTGGG | 1 cut(s) | 225 |
| BmuI | ACTGGG | 1 cut(s) | 225 |
| BpmI | CTGGAG | 1 cut(s) | 49 |
| BsaJI | CCNNGG | 3 cut(s) | 60, 359, 371 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 423, 453 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 284, 360 |
| Bse1I | ACTGG | 2 cut(s) | 32, 231 |
| Bse21I | CCTNAGG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 61 |
| BseDI | CCNNGG | 3 cut(s) | 60, 359, 371 |
| BseGI | GGATG | 3 cut(s) | 13, 106, 196 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 284, 360 |
| BseMII | CTCAG | 3 cut(s) | 176, 297, 334 |
| BseNI | ACTGG | 2 cut(s) | 32, 231 |
| BseXI | GCAGC | 1 cut(s) | 200 |
| BsgI | GTGCAG | 1 cut(s) | 419 |
| BshFI | GGCC | 2 cut(s) | 364, 423 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 284, 360 |
| BsmAI | GTCTC | 1 cut(s) | 60 |
| BsnI | GGCC | 2 cut(s) | 364, 423 |
| Bsp143I | GATC | 1 cut(s) | 94 |
| BspACI | CCGC | 3 cut(s) | 351, 365, 397 |
| BspANI | GGCC | 2 cut(s) | 364, 423 |
| BspCNI | CTCAG | 3 cut(s) | 175, 296, 333 |
| BsrI | ACTGG | 2 cut(s) | 32, 231 |
| BssECI | CCNNGG | 3 cut(s) | 60, 359, 371 |
| BssMI | GATC | 1 cut(s) | 94 |
| BssT1I | CCWWGG | 2 cut(s) | 359, 371 |
| Bst2UI | CCWGG | 1 cut(s) | 61 |
| Bst6I | CTCTTC | 1 cut(s) | 81 |
| BstC8I | GCNNGC | 2 cut(s) | 279, 395 |
| BstDEI | CTNAG | 3 cut(s) | 162, 283, 320 |
| BstEII | GGTNACC | 1 cut(s) | 55 |
| BstF5I | GGATG | 3 cut(s) | 13, 106, 196 |
| BstKTI | GATC | 1 cut(s) | 97 |
| BstMAI | GTCTC | 1 cut(s) | 60 |
| BstMBI | GATC | 1 cut(s) | 94 |
| BstNI | CCWGG | 1 cut(s) | 61 |
| BstPI | GGTNACC | 1 cut(s) | 55 |
| BstSCI | CCNGG | 1 cut(s) | 59 |
| BstV1I | GCAGC | 1 cut(s) | 200 |
| BstX2I | RGATCY | 1 cut(s) | 94 |
| BstYI | RGATCY | 1 cut(s) | 94 |
| Bsu36I | CCTNAGG | 1 cut(s) | 283 |
| BsuRI | GGCC | 2 cut(s) | 364, 423 |
| BtgZI | GCGATG | 1 cut(s) | 281 |
| BtrI | CACGTC | 1 cut(s) | 486 |
| BtsCI | GGATG | 3 cut(s) | 13, 106, 196 |
| BtsI | GCAGTG | 1 cut(s) | 431 |
| BtsIMutI | CAGTG | 2 cut(s) | 123, 431 |
| Cac8I | GCNNGC | 2 cut(s) | 279, 395 |
| Cfr13I | GGNCC | 1 cut(s) | 421 |
| CviAII | CATG | 1 cut(s) | 70 |
| CviJI | RGCY | 8 cut(s) | 119, 277, 281, 364, 393, 408, 423, 471 |
| CviKI_1 | RGCY | 8 cut(s) | 119, 277, 281, 364, 393, 408, 423, 471 |
| DdeI | CTNAG | 3 cut(s) | 162, 283, 320 |
| DpnI | GATC | 1 cut(s) | 96 |
| DpnII | GATC | 1 cut(s) | 94 |
| Eam1104I | CTCTTC | 1 cut(s) | 81 |
| EarI | CTCTTC | 1 cut(s) | 81 |
| Eco130I | CCWWGG | 2 cut(s) | 359, 371 |
| Eco57I | CTGAAG | 1 cut(s) | 246 |
| Eco81I | CCTNAGG | 1 cut(s) | 283 |
| Eco91I | GGTNACC | 1 cut(s) | 55 |
| EcoO65I | GGTNACC | 1 cut(s) | 55 |
| EcoRII | CCWGG | 1 cut(s) | 59 |
| EcoT14I | CCWWGG | 2 cut(s) | 359, 371 |
| ErhI | CCWWGG | 2 cut(s) | 359, 371 |
| FaeI | CATG | 1 cut(s) | 73 |
| FaiI | YATR | 4 cut(s) | 19, 21, 71, 476 |
| FatI | CATG | 1 cut(s) | 69 |
| FauI | CCCGC | 1 cut(s) | 358 |
| FauNDI | CATATG | 1 cut(s) | 19 |
| FblI | GTMKAC | 1 cut(s) | 24 |
| Fnu4HI | GCNGC | 2 cut(s) | 189, 365 |
| FokI | GGATG | 3 cut(s) | 20, 113, 183 |
| Fsp4HI | GCNGC | 2 cut(s) | 189, 365 |
| FspBI | CTAG | 1 cut(s) | 50 |
| GluI | GCNGC | 2 cut(s) | 189, 365 |
| GsuI | CTGGAG | 1 cut(s) | 49 |
| HaeIII | GGCC | 2 cut(s) | 364, 423 |
| Hin1II | CATG | 1 cut(s) | 73 |
| HindIII | AAGCTT | 1 cut(s) | 391 |
| HinfI | GANTC | 1 cut(s) | 202 |
| Hpy166II | GTNNAC | 1 cut(s) | 25 |
| Hpy188I | TCNGA | 5 cut(s) | 165, 201, 237, 323, 449 |
| Hpy188III | TCNNGA | 1 cut(s) | 98 |
| Hpy8I | GTNNAC | 1 cut(s) | 25 |
| HpyAV | CCTTC | 4 cut(s) | 133, 251, 350, 365 |
| HpyCH4IV | ACGT | 1 cut(s) | 485 |
| HpyCH4V | TGCA | 2 cut(s) | 136, 436 |
| HpyF3I | CTNAG | 3 cut(s) | 162, 283, 320 |
| HpySE526I | ACGT | 1 cut(s) | 485 |
| Hsp92II | CATG | 1 cut(s) | 73 |
| Kzo9I | GATC | 1 cut(s) | 94 |
| LmnI | GCTCC | 1 cut(s) | 305 |
| LpnPI | CCDG | 8 cut(s) | 13, 46, 73, 83, 244, 270, 288, 291 |
| Lsp1109I | GCAGC | 1 cut(s) | 200 |
| MaeI | CTAG | 1 cut(s) | 50 |
| MaeII | ACGT | 1 cut(s) | 485 |
| MaeIII | GTNAC | 1 cut(s) | 55 |
| MalI | GATC | 1 cut(s) | 96 |
| MboI | GATC | 1 cut(s) | 94 |
| MboII | GAAGA | 2 cut(s) | 85, 98 |
| MflI | RGATCY | 1 cut(s) | 94 |
| MlyI | GAGTC | 1 cut(s) | 196 |
| MmeI | TCCRAC | 3 cut(s) | 224, 260, 278 |
| MnlI | CCTC | 6 cut(s) | 255, 292, 369, 378, 449, 455 |
| MseI | TTAA | 1 cut(s) | 105 |
| MslI | CAYNNNNRTG | 1 cut(s) | 128 |
| MspR9I | CCNGG | 1 cut(s) | 61 |
| MvaI | CCWGG | 1 cut(s) | 61 |
| NdeI | CATATG | 1 cut(s) | 19 |
| NdeII | GATC | 1 cut(s) | 94 |
| NlaIII | CATG | 1 cut(s) | 73 |
| PkrI | GCNGC | 2 cut(s) | 190, 366 |
| PleI | GAGTC | 1 cut(s) | 196 |
| PpsI | GAGTC | 1 cut(s) | 196 |
| Psp6I | CCWGG | 1 cut(s) | 59 |
| PspEI | GGTNACC | 1 cut(s) | 55 |
| PspGI | CCWGG | 1 cut(s) | 59 |
| PspPI | GGNCC | 1 cut(s) | 421 |
| PsuI | RGATCY | 1 cut(s) | 94 |
| RseI | CAYNNNNRTG | 1 cut(s) | 128 |
| SaqAI | TTAA | 1 cut(s) | 105 |
| SatI | GCNGC | 2 cut(s) | 189, 365 |
| Sau3AI | GATC | 1 cut(s) | 94 |
| Sau96I | GGNCC | 1 cut(s) | 421 |
| SchI | GAGTC | 1 cut(s) | 196 |
| ScrFI | CCNGG | 1 cut(s) | 61 |
| SetI | ASST | 5 cut(s) | 395, 441, 447, 473, 488 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 128 |
| SsiI | CCGC | 3 cut(s) | 351, 365, 397 |
| SspMI | CTAG | 1 cut(s) | 50 |
| StyD4I | CCNGG | 1 cut(s) | 59 |
| StyI | CCWWGG | 2 cut(s) | 359, 371 |
| TaiI | ACGT | 1 cut(s) | 488 |
| TaqI | TCGA | 2 cut(s) | 183, 411 |
| TauI | GCSGC | 1 cut(s) | 367 |
| Tru1I | TTAA | 1 cut(s) | 105 |
| Tru9I | TTAA | 1 cut(s) | 105 |
| TscAI | CASTG | 2 cut(s) | 130, 438 |
| TseI | GCWGC | 1 cut(s) | 188 |
| TspDTI | ATGAA | 2 cut(s) | 86, 161 |
| TspRI | CASTG | 2 cut(s) | 130, 438 |
| XmiI | GTMKAC | 1 cut(s) | 24 |
| XspI | CTAG | 1 cut(s) | 50 |