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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 267 |
| AccI | GTMKAC | 2 cut(s) | 689, 768 |
| AccII | CGCG | 1 cut(s) | 617 |
| AciI | CCGC | 2 cut(s) | 617, 890 |
| AclWI | GGATC | 4 cut(s) | 181, 233, 246, 532 |
| AcuI | CTGAAG | 1 cut(s) | 563 |
| AfaI | GTAC | 1 cut(s) | 414 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 157, 233, 395 |
| AflIII | ACRYGT | 1 cut(s) | 900 |
| AgsI | TTSAA | 2 cut(s) | 383, 456 |
| AhlI | ACTAGT | 1 cut(s) | 884 |
| AjnI | CCWGG | 3 cut(s) | 169, 232, 803 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 47, 79 |
| AluBI | AGCT | 3 cut(s) | 50, 371, 494 |
| AluI | AGCT | 3 cut(s) | 50, 371, 494 |
| Alw21I | GWGCWC | 1 cut(s) | 651 |
| Alw26I | GTCTC | 1 cut(s) | 804 |
| Alw44I | GTGCAC | 1 cut(s) | 647 |
| AlwI | GGATC | 4 cut(s) | 181, 233, 246, 532 |
| AoxI | GGCC | 1 cut(s) | 230 |
| ApaLI | GTGCAC | 1 cut(s) | 647 |
| ApeKI | GCWGC | 4 cut(s) | 109, 368, 491, 572 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 500, 532 |
| AspS9I | GGNCC | 1 cut(s) | 421 |
| AsuHPI | GGTGA | 1 cut(s) | 22 |
| AvaII | GGWCC | 1 cut(s) | 421 |
| AxyI | CCTNAGG | 1 cut(s) | 390 |
| BaeGI | GKGCMC | 1 cut(s) | 651 |
| BamHI | GGATCC | 1 cut(s) | 238 |
| BbsI | GAAGAC | 1 cut(s) | 551 |
| Bbv12I | GWGCWC | 1 cut(s) | 651 |
| BbvI | GCAGC | 4 cut(s) | 121, 380, 503, 559 |
| BccI | CCATC | 3 cut(s) | 316, 424, 739 |
| BceAI | ACGGC | 1 cut(s) | 585 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 399, 433 |
| BciT130I | CCWGG | 3 cut(s) | 171, 234, 805 |
| BciVI | GTATCC | 1 cut(s) | 289 |
| BcoDI | GTCTC | 1 cut(s) | 804 |
| BcuI | ACTAGT | 1 cut(s) | 884 |
| BfaI | CTAG | 2 cut(s) | 794, 885 |
| BfmI | CTRYAG | 1 cut(s) | 629 |
| BfuI | GTATCC | 1 cut(s) | 289 |
| BglII | AGATCT | 1 cut(s) | 838 |
| BisI | GCNGC | 5 cut(s) | 110, 369, 492, 573, 618 |
| BlsI | GCNGC | 5 cut(s) | 111, 370, 493, 574, 619 |
| Bme1390I | CCNGG | 3 cut(s) | 171, 234, 805 |
| Bme18I | GGWCC | 1 cut(s) | 421 |
| BmgT120I | GGNCC | 1 cut(s) | 421 |
| BmiI | GGNNCC | 3 cut(s) | 168, 240, 423 |
| BmrFI | CCNGG | 3 cut(s) | 171, 234, 805 |
| BmsI | GCATC | 2 cut(s) | 3, 238 |
| BpiI | GAAGAC | 1 cut(s) | 551 |
| BpmI | CTGGAG | 1 cut(s) | 793 |
| BsaJI | CCNNGG | 4 cut(s) | 227, 233, 426, 804 |
| BsaWI | WCCGGW | 1 cut(s) | 532 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 157, 233, 395 |
| Bse1I | ACTGG | 3 cut(s) | 82, 212, 776 |
| Bse21I | CCTNAGG | 1 cut(s) | 390 |
| Bse3DI | GCAATG | 1 cut(s) | 874 |
| BseBI | CCWGG | 3 cut(s) | 171, 234, 805 |
| BseDI | CCNNGG | 4 cut(s) | 227, 233, 426, 804 |
| BseGI | GGATG | 2 cut(s) | 757, 850 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 157, 233, 395 |
| BseMI | GCAATG | 1 cut(s) | 874 |
| BseMII | CTCAG | 2 cut(s) | 168, 381 |
| BseNI | ACTGG | 3 cut(s) | 82, 212, 776 |
| BseRI | GAGGAG | 1 cut(s) | 194 |
| BseSI | GKGCMC | 1 cut(s) | 651 |
| BseXI | GCAGC | 4 cut(s) | 121, 380, 503, 559 |
| BsgI | GTGCAG | 1 cut(s) | 558 |
| Bsh1236I | CGCG | 1 cut(s) | 617 |
| Bsh1285I | CGRYCG | 1 cut(s) | 147 |
| BshFI | GGCC | 1 cut(s) | 232 |
| BsiEI | CGRYCG | 1 cut(s) | 147 |
| BsiHKAI | GWGCWC | 1 cut(s) | 651 |
| BsiSI | CCGG | 1 cut(s) | 533 |
| BslFI | GGGAC | 1 cut(s) | 407 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 157, 233, 395 |
| BsmAI | GTCTC | 1 cut(s) | 804 |
| BsmFI | GGGAC | 1 cut(s) | 407 |
| BsmI | GAATGC | 1 cut(s) | 451 |
| BsnI | GGCC | 1 cut(s) | 232 |
| Bsp1286I | GDGCHC | 1 cut(s) | 651 |
| Bsp143I | GATC | 7 cut(s) | 26, 154, 173, 238, 340, 537, 838 |
| BspACI | CCGC | 2 cut(s) | 617, 890 |
| BspANI | GGCC | 1 cut(s) | 232 |
| BspCNI | CTCAG | 2 cut(s) | 169, 382 |
| BspFNI | CGCG | 1 cut(s) | 617 |
| BspLI | GGNNCC | 3 cut(s) | 168, 240, 423 |
| BspMAI | CTGCAG | 1 cut(s) | 633 |
| BspPI | GGATC | 4 cut(s) | 181, 233, 246, 532 |
| BsrDI | GCAATG | 1 cut(s) | 874 |
| BsrI | ACTGG | 3 cut(s) | 82, 212, 776 |
| BssECI | CCNNGG | 4 cut(s) | 227, 233, 426, 804 |
| BssMI | GATC | 7 cut(s) | 26, 154, 173, 238, 340, 537, 838 |
| BssNAI | GTATAC | 1 cut(s) | 690 |
| BssT1I | CCWWGG | 2 cut(s) | 227, 426 |
| Bst1107I | GTATAC | 1 cut(s) | 690 |
| Bst2UI | CCWGG | 3 cut(s) | 171, 234, 805 |
| Bst4CI | ACNGT | 2 cut(s) | 379, 442 |
| Bst6I | CTCTTC | 1 cut(s) | 825 |
| BstDEI | CTNAG | 4 cut(s) | 6, 177, 372, 390 |
| BstEII | GGTNACC | 1 cut(s) | 799 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 393 |
| BstF5I | GGATG | 2 cut(s) | 757, 850 |
| BstFNI | CGCG | 1 cut(s) | 617 |
| BstKTI | GATC | 7 cut(s) | 29, 157, 176, 241, 343, 540, 841 |
| BstMAI | GTCTC | 1 cut(s) | 804 |
| BstMBI | GATC | 7 cut(s) | 26, 154, 173, 238, 340, 537, 838 |
| BstMCI | CGRYCG | 1 cut(s) | 147 |
| BstNI | CCWGG | 3 cut(s) | 171, 234, 805 |
| BstNSI | RCATGY | 2 cut(s) | 451, 904 |
| BstPI | GGTNACC | 1 cut(s) | 799 |
| BstSCI | CCNGG | 3 cut(s) | 169, 232, 803 |
| BstSFI | CTRYAG | 1 cut(s) | 629 |
| BstSLI | GKGCMC | 1 cut(s) | 651 |
| BstUI | CGCG | 1 cut(s) | 617 |
| BstV1I | GCAGC | 4 cut(s) | 121, 380, 503, 559 |
| BstV2I | GAAGAC | 1 cut(s) | 551 |
| BstX2I | RGATCY | 4 cut(s) | 173, 238, 537, 838 |
| BstYI | RGATCY | 4 cut(s) | 173, 238, 537, 838 |
| BstZ17I | GTATAC | 1 cut(s) | 690 |
| Bsu36I | CCTNAGG | 1 cut(s) | 390 |
| BsuI | GTATCC | 1 cut(s) | 289 |
| BsuRI | GGCC | 1 cut(s) | 232 |
| BtsCI | GGATG | 2 cut(s) | 757, 850 |
| Cfr13I | GGNCC | 1 cut(s) | 421 |
| CseI | GACGC | 2 cut(s) | 209, 317 |
| Csp6I | GTAC | 1 cut(s) | 413 |
| CviAII | CATG | 3 cut(s) | 448, 814, 901 |
| CviQI | GTAC | 1 cut(s) | 413 |
| DdeI | CTNAG | 4 cut(s) | 6, 177, 372, 390 |
| DpnI | GATC | 7 cut(s) | 28, 156, 175, 240, 342, 539, 840 |
| DpnII | GATC | 7 cut(s) | 26, 154, 173, 238, 340, 537, 838 |
| Eam1104I | CTCTTC | 1 cut(s) | 825 |
| EarI | CTCTTC | 1 cut(s) | 825 |
| Eco130I | CCWWGG | 2 cut(s) | 227, 426 |
| Eco47I | GGWCC | 1 cut(s) | 421 |
| Eco57I | CTGAAG | 1 cut(s) | 563 |
| Eco81I | CCTNAGG | 1 cut(s) | 390 |
| Eco91I | GGTNACC | 1 cut(s) | 799 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 393 |
| EcoO65I | GGTNACC | 1 cut(s) | 799 |
| EcoRII | CCWGG | 3 cut(s) | 169, 232, 803 |
| EcoT14I | CCWWGG | 2 cut(s) | 227, 426 |
| EcoT22I | ATGCAT | 1 cut(s) | 453 |
| ErhI | CCWWGG | 2 cut(s) | 227, 426 |
| FaeI | CATG | 3 cut(s) | 451, 817, 904 |
| FaqI | GGGAC | 1 cut(s) | 407 |
| FatI | CATG | 3 cut(s) | 447, 813, 900 |
| FauNDI | CATATG | 1 cut(s) | 763 |
| FblI | GTMKAC | 2 cut(s) | 689, 768 |
| Fnu4HI | GCNGC | 5 cut(s) | 110, 369, 492, 573, 618 |
| FokI | GGATG | 2 cut(s) | 764, 857 |
| Fsp4HI | GCNGC | 5 cut(s) | 110, 369, 492, 573, 618 |
| FspBI | CTAG | 2 cut(s) | 794, 885 |
| GluI | GCNGC | 5 cut(s) | 110, 369, 492, 573, 618 |
| GsuI | CTGGAG | 1 cut(s) | 793 |
| HaeIII | GGCC | 1 cut(s) | 232 |
| HapII | CCGG | 1 cut(s) | 533 |
| HgaI | GACGC | 2 cut(s) | 209, 317 |
| Hin1II | CATG | 3 cut(s) | 451, 817, 904 |
| HincII | GTYRAC | 2 cut(s) | 217, 445 |
| HindII | GTYRAC | 2 cut(s) | 217, 445 |
| HinfI | GANTC | 1 cut(s) | 326 |
| HpaII | CCGG | 1 cut(s) | 533 |
| HphI | GGTGA | 1 cut(s) | 22 |
| Hpy166II | GTNNAC | 5 cut(s) | 217, 445, 649, 690, 769 |
| Hpy188I | TCNGA | 4 cut(s) | 178, 321, 331, 898 |
| Hpy188III | TCNNGA | 4 cut(s) | 460, 541, 842, 918 |
| Hpy8I | GTNNAC | 5 cut(s) | 217, 445, 649, 690, 769 |
| HpyAV | CCTTC | 1 cut(s) | 493 |
| HpyCH4III | ACNGT | 2 cut(s) | 379, 442 |
| HpyCH4V | TGCA | 7 cut(s) | 16, 451, 575, 631, 649, 661, 907 |
| HpyF3I | CTNAG | 4 cut(s) | 6, 177, 372, 390 |
| Hsp92II | CATG | 3 cut(s) | 451, 817, 904 |
| Kzo9I | GATC | 7 cut(s) | 26, 154, 173, 238, 340, 537, 838 |
| Lsp1109I | GCAGC | 4 cut(s) | 121, 380, 503, 559 |
| LweI | GCATC | 2 cut(s) | 3, 238 |
| MaeI | CTAG | 2 cut(s) | 794, 885 |
| MaeIII | GTNAC | 1 cut(s) | 799 |
| MalI | GATC | 7 cut(s) | 28, 156, 175, 240, 342, 539, 840 |
| MboI | GATC | 7 cut(s) | 26, 154, 173, 238, 340, 537, 838 |
| MboII | GAAGA | 7 cut(s) | 233, 344, 445, 556, 573, 829, 842 |
| MflI | RGATCY | 4 cut(s) | 173, 238, 537, 838 |
| MhlI | GDGCHC | 1 cut(s) | 651 |
| MluCI | AATT | 4 cut(s) | 59, 345, 676, 734 |
| MnlI | CCTC | 6 cut(s) | 156, 172, 286, 385, 456, 919 |
| Mph1103I | ATGCAT | 1 cut(s) | 453 |
| MseI | TTAA | 2 cut(s) | 704, 849 |
| MspA1I | CMGCKG | 1 cut(s) | 494 |
| MspI | CCGG | 1 cut(s) | 533 |
| MspR9I | CCNGG | 3 cut(s) | 171, 234, 805 |
| Mva1269I | GAATGC | 1 cut(s) | 451 |
| MvaI | CCWGG | 3 cut(s) | 171, 234, 805 |
| MvnI | CGCG | 1 cut(s) | 617 |
| NdeI | CATATG | 1 cut(s) | 763 |
| NdeII | GATC | 7 cut(s) | 26, 154, 173, 238, 340, 537, 838 |
| NlaIII | CATG | 3 cut(s) | 451, 817, 904 |
| NlaIV | GGNNCC | 3 cut(s) | 168, 240, 423 |
| NsiI | ATGCAT | 1 cut(s) | 453 |
| NspI | RCATGY | 2 cut(s) | 451, 904 |
| PciI | ACATGT | 1 cut(s) | 900 |
| PctI | GAATGC | 1 cut(s) | 451 |
| PfeI | GAWTC | 1 cut(s) | 326 |
| PkrI | GCNGC | 5 cut(s) | 111, 370, 493, 574, 619 |
| PscI | ACATGT | 1 cut(s) | 900 |
| PsiI | TTATAA | 1 cut(s) | 267 |
| Psp6I | CCWGG | 3 cut(s) | 169, 232, 803 |
| PspEI | GGTNACC | 1 cut(s) | 799 |
| PspGI | CCWGG | 3 cut(s) | 169, 232, 803 |
| PspN4I | GGNNCC | 3 cut(s) | 168, 240, 423 |
| PspPI | GGNCC | 1 cut(s) | 421 |
| PstI | CTGCAG | 1 cut(s) | 633 |
| PsuI | RGATCY | 4 cut(s) | 173, 238, 537, 838 |
| PvuII | CAGCTG | 1 cut(s) | 494 |
| RsaI | GTAC | 1 cut(s) | 414 |
| RsaNI | GTAC | 1 cut(s) | 413 |
| SaqAI | TTAA | 2 cut(s) | 704, 849 |
| SatI | GCNGC | 5 cut(s) | 110, 369, 492, 573, 618 |
| Sau3AI | GATC | 7 cut(s) | 26, 154, 173, 238, 340, 537, 838 |
| Sau96I | GGNCC | 1 cut(s) | 421 |
| ScrFI | CCNGG | 3 cut(s) | 171, 234, 805 |
| SduI | GDGCHC | 1 cut(s) | 651 |
| SetI | ASST | 8 cut(s) | 12, 52, 91, 118, 172, 304, 373, 496 |
| SfaNI | GCATC | 2 cut(s) | 3, 238 |
| SfcI | CTRYAG | 1 cut(s) | 629 |
| SinI | GGWCC | 1 cut(s) | 421 |
| SpeI | ACTAGT | 1 cut(s) | 884 |
| Sse9I | AATT | 4 cut(s) | 59, 345, 676, 734 |
| SsiI | CCGC | 2 cut(s) | 617, 890 |
| SspMI | CTAG | 2 cut(s) | 794, 885 |
| StyD4I | CCNGG | 3 cut(s) | 169, 232, 803 |
| StyI | CCWWGG | 2 cut(s) | 227, 426 |
| TaaI | ACNGT | 2 cut(s) | 379, 442 |
| TaqI | TCGA | 3 cut(s) | 143, 353, 459 |
| TaqII | GACCGA | 2 cut(s) | 161, 409 |
| TasI | AATT | 4 cut(s) | 59, 345, 676, 734 |
| TauI | GCSGC | 1 cut(s) | 620 |
| TfiI | GAWTC | 1 cut(s) | 326 |
| Tru1I | TTAA | 2 cut(s) | 704, 849 |
| Tru9I | TTAA | 2 cut(s) | 704, 849 |
| TseI | GCWGC | 4 cut(s) | 109, 368, 491, 572 |
| TspDTI | ATGAA | 4 cut(s) | 68, 135, 830, 863 |
| VneI | GTGCAC | 1 cut(s) | 647 |
| VpaK11BI | GGWCC | 1 cut(s) | 421 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 393 |
| XceI | RCATGY | 2 cut(s) | 451, 904 |
| XmiI | GTMKAC | 2 cut(s) | 689, 768 |
| XspI | CTAG | 2 cut(s) | 794, 885 |
| Zsp2I | ATGCAT | 1 cut(s) | 453 |