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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 433 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 20 |
| AclI | AACGTT | 1 cut(s) | 401 |
| AclWI | GGATC | 2 cut(s) | 367, 380 |
| AcoI | YGGCCR | 1 cut(s) | 242 |
| AcsI | RAATTY | 1 cut(s) | 426 |
| AcuI | CTGAAG | 1 cut(s) | 125 |
| AfaI | GTAC | 3 cut(s) | 48, 143, 236 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 20, 174, 469 |
| AgsI | TTSAA | 3 cut(s) | 88, 433, 451 |
| AjnI | CCWGG | 1 cut(s) | 462 |
| AluBI | AGCT | 2 cut(s) | 73, 121 |
| AluI | AGCT | 2 cut(s) | 73, 121 |
| AlwI | GGATC | 2 cut(s) | 367, 380 |
| Ama87I | CYCGRG | 1 cut(s) | 376 |
| AoxI | GGCC | 1 cut(s) | 242 |
| ApeKI | GCWGC | 1 cut(s) | 24 |
| ApoI | RAATTY | 1 cut(s) | 426 |
| AspS9I | GGNCC | 1 cut(s) | 222 |
| AsuC2I | CCSGG | 3 cut(s) | 175, 377, 378 |
| AsuHPI | GGTGA | 1 cut(s) | 157 |
| AvaI | CYCGRG | 1 cut(s) | 376 |
| AvaII | GGWCC | 1 cut(s) | 222 |
| BalI | TGGCCA | 1 cut(s) | 244 |
| BamHI | GGATCC | 1 cut(s) | 372 |
| BanII | GRGCYC | 2 cut(s) | 181, 502 |
| BbsI | GAAGAC | 2 cut(s) | 12, 359 |
| BbvI | GCAGC | 1 cut(s) | 36 |
| BccI | CCATC | 3 cut(s) | 233, 262, 405 |
| BceAI | ACGGC | 1 cut(s) | 79 |
| BciT130I | CCWGG | 1 cut(s) | 464 |
| BclI | TGATCA | 1 cut(s) | 135 |
| BcnI | CCSGG | 3 cut(s) | 175, 377, 378 |
| BfuAI | ACCTGC | 1 cut(s) | 433 |
| BglII | AGATCT | 1 cut(s) | 53 |
| BisI | GCNGC | 1 cut(s) | 25 |
| BlsI | GCNGC | 1 cut(s) | 26 |
| Bme1390I | CCNGG | 4 cut(s) | 175, 377, 378, 464 |
| Bme18I | GGWCC | 1 cut(s) | 222 |
| BmeT110I | CYCGRG | 1 cut(s) | 376 |
| BmgT120I | GGNCC | 1 cut(s) | 222 |
| BmiI | GGNNCC | 2 cut(s) | 344, 374 |
| BmrFI | CCNGG | 4 cut(s) | 175, 377, 378, 464 |
| BmsI | GCATC | 2 cut(s) | 267, 308 |
| BpiI | GAAGAC | 2 cut(s) | 12, 359 |
| BpuEI | CTTGAG | 1 cut(s) | 368 |
| BpuMI | CCSGG | 3 cut(s) | 175, 377, 378 |
| BsaAI | YACGTR | 1 cut(s) | 141 |
| BsaJI | CCNNGG | 3 cut(s) | 174, 245, 376 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 379, 409 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 20, 174, 469 |
| Bse1I | ACTGG | 2 cut(s) | 344, 374 |
| BseBI | CCWGG | 1 cut(s) | 464 |
| BseDI | CCNNGG | 3 cut(s) | 174, 245, 376 |
| BseGI | GGATG | 2 cut(s) | 282, 323 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 20, 174, 469 |
| BseMII | CTCAG | 3 cut(s) | 72, 194, 515 |
| BseNI | ACTGG | 2 cut(s) | 344, 374 |
| BseXI | GCAGC | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 244 |
| BsiHKCI | CYCGRG | 1 cut(s) | 376 |
| BsiSI | CCGG | 2 cut(s) | 174, 377 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 20, 174, 469 |
| BsnI | GGCC | 1 cut(s) | 244 |
| BsoBI | CYCGRG | 1 cut(s) | 376 |
| Bsp1286I | GDGCHC | 2 cut(s) | 181, 502 |
| Bsp143I | GATC | 3 cut(s) | 53, 135, 372 |
| BspANI | GGCC | 1 cut(s) | 244 |
| BspCNI | CTCAG | 3 cut(s) | 73, 193, 514 |
| BspLI | GGNNCC | 2 cut(s) | 344, 374 |
| BspMI | ACCTGC | 1 cut(s) | 433 |
| BspPI | GGATC | 2 cut(s) | 367, 380 |
| BsrI | ACTGG | 2 cut(s) | 344, 374 |
| BssECI | CCNNGG | 3 cut(s) | 174, 245, 376 |
| BssMI | GATC | 3 cut(s) | 53, 135, 372 |
| BssT1I | CCWWGG | 1 cut(s) | 245 |
| Bst2UI | CCWGG | 1 cut(s) | 464 |
| Bst4CI | ACNGT | 1 cut(s) | 492 |
| BstBAI | YACGTR | 1 cut(s) | 141 |
| BstC8I | GCNNGC | 2 cut(s) | 123, 323 |
| BstDEI | CTNAG | 4 cut(s) | 50, 81, 180, 501 |
| BstF5I | GGATG | 2 cut(s) | 282, 323 |
| BstKTI | GATC | 3 cut(s) | 56, 138, 375 |
| BstMBI | GATC | 3 cut(s) | 53, 135, 372 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 483 |
| BstNI | CCWGG | 1 cut(s) | 464 |
| BstNSI | RCATGY | 1 cut(s) | 44 |
| BstSCI | CCNGG | 4 cut(s) | 173, 375, 376, 462 |
| BstV1I | GCAGC | 1 cut(s) | 36 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 359 |
| BstX2I | RGATCY | 2 cut(s) | 53, 372 |
| BstYI | RGATCY | 2 cut(s) | 53, 372 |
| BsuRI | GGCC | 1 cut(s) | 244 |
| BtsCI | GGATG | 2 cut(s) | 282, 323 |
| BtsI | GCAGTG | 1 cut(s) | 132 |
| BtsIMutI | CAGTG | 1 cut(s) | 132 |
| BveI | ACCTGC | 1 cut(s) | 433 |
| Cac8I | GCNNGC | 2 cut(s) | 123, 323 |
| Cfr13I | GGNCC | 1 cut(s) | 222 |
| Cfr9I | CCCGGG | 1 cut(s) | 376 |
| CseI | GACGC | 1 cut(s) | 119 |
| Csp6I | GTAC | 3 cut(s) | 47, 142, 235 |
| CviAII | CATG | 3 cut(s) | 41, 189, 510 |
| CviJI | RGCY | 9 cut(s) | 27, 73, 94, 121, 179, 244, 300, 467, 500 |
| CviKI_1 | RGCY | 9 cut(s) | 27, 73, 94, 121, 179, 244, 300, 467, 500 |
| CviQI | GTAC | 3 cut(s) | 47, 142, 235 |
| DdeI | CTNAG | 4 cut(s) | 50, 81, 180, 501 |
| DpnI | GATC | 3 cut(s) | 55, 137, 374 |
| DpnII | GATC | 3 cut(s) | 53, 135, 372 |
| DraI | TTTAAA | 1 cut(s) | 33 |
| EaeI | YGGCCR | 1 cut(s) | 242 |
| Eco130I | CCWWGG | 1 cut(s) | 245 |
| Eco24I | GRGCYC | 2 cut(s) | 181, 502 |
| Eco47I | GGWCC | 1 cut(s) | 222 |
| Eco57I | CTGAAG | 1 cut(s) | 125 |
| Eco88I | CYCGRG | 1 cut(s) | 376 |
| EcoRII | CCWGG | 1 cut(s) | 462 |
| EcoT14I | CCWWGG | 1 cut(s) | 245 |
| EcoT38I | GRGCYC | 2 cut(s) | 181, 502 |
| ErhI | CCWWGG | 1 cut(s) | 245 |
| FaeI | CATG | 3 cut(s) | 44, 192, 513 |
| FaiI | YATR | 8 cut(s) | 42, 77, 190, 197, 288, 495, 511, 518 |
| FatI | CATG | 3 cut(s) | 40, 188, 509 |
| FbaI | TGATCA | 1 cut(s) | 135 |
| Fnu4HI | GCNGC | 1 cut(s) | 25 |
| FokI | GGATG | 2 cut(s) | 289, 330 |
| FriOI | GRGCYC | 2 cut(s) | 181, 502 |
| Fsp4HI | GCNGC | 1 cut(s) | 25 |
| GluI | GCNGC | 1 cut(s) | 25 |
| HaeIII | GGCC | 1 cut(s) | 244 |
| HapII | CCGG | 2 cut(s) | 174, 377 |
| HgaI | GACGC | 1 cut(s) | 119 |
| Hin1II | CATG | 3 cut(s) | 44, 192, 513 |
| HinfI | GANTC | 2 cut(s) | 8, 253 |
| HpaII | CCGG | 2 cut(s) | 174, 377 |
| HphI | GGTGA | 1 cut(s) | 157 |
| Hpy188I | TCNGA | 5 cut(s) | 58, 183, 258, 330, 504 |
| HpyAV | CCTTC | 2 cut(s) | 100, 266 |
| HpyCH4III | ACNGT | 1 cut(s) | 492 |
| HpyCH4IV | ACGT | 3 cut(s) | 140, 155, 401 |
| HpyCH4V | TGCA | 2 cut(s) | 280, 305 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 483 |
| HpyF3I | CTNAG | 4 cut(s) | 50, 81, 180, 501 |
| HpySE526I | ACGT | 3 cut(s) | 140, 155, 401 |
| Hsp92II | CATG | 3 cut(s) | 44, 192, 513 |
| Ksp22I | TGATCA | 1 cut(s) | 135 |
| Kzo9I | GATC | 3 cut(s) | 53, 135, 372 |
| LmnI | GCTCC | 1 cut(s) | 439 |
| Lsp1109I | GCAGC | 1 cut(s) | 36 |
| LweI | GCATC | 2 cut(s) | 267, 308 |
| MaeII | ACGT | 3 cut(s) | 140, 155, 401 |
| MalI | GATC | 3 cut(s) | 55, 137, 374 |
| MboI | GATC | 3 cut(s) | 53, 135, 372 |
| MboII | GAAGA | 6 cut(s) | 17, 100, 151, 154, 364, 398 |
| MfeI | CAATTG | 1 cut(s) | 238 |
| MflI | RGATCY | 2 cut(s) | 53, 372 |
| MhlI | GDGCHC | 2 cut(s) | 181, 502 |
| MlsI | TGGCCA | 1 cut(s) | 244 |
| MluCI | AATT | 5 cut(s) | 15, 216, 238, 426, 433 |
| MluNI | TGGCCA | 1 cut(s) | 244 |
| MlyI | GAGTC | 1 cut(s) | 2 |
| MmeI | TCCRAC | 1 cut(s) | 422 |
| Mox20I | TGGCCA | 1 cut(s) | 244 |
| MscI | TGGCCA | 1 cut(s) | 244 |
| MseI | TTAA | 1 cut(s) | 32 |
| Msp20I | TGGCCA | 1 cut(s) | 244 |
| MspI | CCGG | 2 cut(s) | 174, 377 |
| MspR9I | CCNGG | 4 cut(s) | 175, 377, 378, 464 |
| MunI | CAATTG | 1 cut(s) | 238 |
| MvaI | CCWGG | 1 cut(s) | 464 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 483 |
| NciI | CCSGG | 3 cut(s) | 175, 377, 378 |
| NdeII | GATC | 3 cut(s) | 53, 135, 372 |
| NlaIII | CATG | 3 cut(s) | 44, 192, 513 |
| NlaIV | GGNNCC | 2 cut(s) | 344, 374 |
| NspI | RCATGY | 1 cut(s) | 44 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 207 |
| PfeI | GAWTC | 1 cut(s) | 253 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 20 |
| PkrI | GCNGC | 1 cut(s) | 26 |
| PleI | GAGTC | 1 cut(s) | 2 |
| PpsI | GAGTC | 1 cut(s) | 2 |
| Ppu21I | YACGTR | 1 cut(s) | 141 |
| Psp1406I | AACGTT | 1 cut(s) | 401 |
| Psp6I | CCWGG | 1 cut(s) | 462 |
| PspGI | CCWGG | 1 cut(s) | 462 |
| PspN4I | GGNNCC | 2 cut(s) | 344, 374 |
| PspPI | GGNCC | 1 cut(s) | 222 |
| PsuI | RGATCY | 2 cut(s) | 53, 372 |
| RsaI | GTAC | 3 cut(s) | 48, 143, 236 |
| RsaNI | GTAC | 3 cut(s) | 47, 142, 235 |
| SaqAI | TTAA | 1 cut(s) | 32 |
| SatI | GCNGC | 1 cut(s) | 25 |
| Sau3AI | GATC | 3 cut(s) | 53, 135, 372 |
| Sau96I | GGNCC | 1 cut(s) | 222 |
| SchI | GAGTC | 1 cut(s) | 2 |
| ScrFI | CCNGG | 4 cut(s) | 175, 377, 378, 464 |
| SduI | GDGCHC | 2 cut(s) | 181, 502 |
| SetI | ASST | 9 cut(s) | 75, 123, 143, 147, 158, 251, 404, 447, 465 |
| SfaNI | GCATC | 2 cut(s) | 267, 308 |
| SinI | GGWCC | 1 cut(s) | 222 |
| SmaI | CCCGGG | 1 cut(s) | 378 |
| SmlI | CTYRAG | 1 cut(s) | 347 |
| SmoI | CTYRAG | 1 cut(s) | 347 |
| Sse9I | AATT | 5 cut(s) | 15, 216, 238, 426, 433 |
| StyD4I | CCNGG | 4 cut(s) | 173, 375, 376, 462 |
| StyI | CCWWGG | 1 cut(s) | 245 |
| TaaI | ACNGT | 1 cut(s) | 492 |
| TaiI | ACGT | 3 cut(s) | 143, 158, 404 |
| TaqI | TCGA | 2 cut(s) | 201, 409 |
| TasI | AATT | 5 cut(s) | 15, 216, 238, 426, 433 |
| TatI | WGTACW | 2 cut(s) | 46, 234 |
| TfiI | GAWTC | 1 cut(s) | 253 |
| Tru1I | TTAA | 1 cut(s) | 32 |
| Tru9I | TTAA | 1 cut(s) | 32 |
| TscAI | CASTG | 1 cut(s) | 132 |
| TseI | GCWGC | 1 cut(s) | 24 |
| TspDTI | ATGAA | 1 cut(s) | 326 |
| TspGWI | ACGGA | 1 cut(s) | 130 |
| TspMI | CCCGGG | 1 cut(s) | 376 |
| TspRI | CASTG | 1 cut(s) | 132 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 20 |
| VpaK11BI | GGWCC | 1 cut(s) | 222 |
| XapI | RAATTY | 1 cut(s) | 426 |
| XceI | RCATGY | 1 cut(s) | 44 |
| XmaI | CCCGGG | 1 cut(s) | 376 |