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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 7 |
| AccII | CGCG | 1 cut(s) | 578 |
| AciI | CCGC | 3 cut(s) | 578, 596, 618 |
| AclI | AACGTT | 1 cut(s) | 86 |
| AcsI | RAATTY | 2 cut(s) | 14, 110 |
| AcuI | CTGAAG | 2 cut(s) | 195, 231 |
| AfaI | GTAC | 1 cut(s) | 76 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 577 |
| AgsI | TTSAA | 2 cut(s) | 57, 296 |
| AhlI | ACTAGT | 1 cut(s) | 289 |
| AjiI | CACGTC | 1 cut(s) | 591 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 512, 544 |
| AluBI | AGCT | 6 cut(s) | 494, 526, 547, 583, 604, 647 |
| AluI | AGCT | 6 cut(s) | 494, 526, 547, 583, 604, 647 |
| Alw21I | GWGCWC | 5 cut(s) | 428, 549, 585, 606, 649 |
| Alw26I | GTCTC | 1 cut(s) | 380 |
| Alw44I | GTGCAC | 1 cut(s) | 424 |
| AoxI | GGCC | 1 cut(s) | 553 |
| ApaLI | GTGCAC | 1 cut(s) | 424 |
| ApeKI | GCWGC | 1 cut(s) | 146 |
| ApoI | RAATTY | 2 cut(s) | 14, 110 |
| AspLEI | GCGC | 1 cut(s) | 578 |
| AsuHPI | GGTGA | 3 cut(s) | 10, 245, 526 |
| BaeGI | GKGCMC | 1 cut(s) | 428 |
| BanII | GRGCYC | 4 cut(s) | 549, 585, 606, 649 |
| Bbv12I | GWGCWC | 5 cut(s) | 428, 549, 585, 606, 649 |
| BbvI | GCAGC | 1 cut(s) | 158 |
| BcoDI | GTCTC | 1 cut(s) | 380 |
| BcuI | ACTAGT | 1 cut(s) | 289 |
| BfaI | CTAG | 2 cut(s) | 290, 664 |
| BisI | GCNGC | 1 cut(s) | 147 |
| BlsI | GCNGC | 1 cut(s) | 148 |
| BmgBI | CACGTC | 1 cut(s) | 591 |
| BmiI | GGNNCC | 1 cut(s) | 569 |
| BpmI | CTGGAG | 1 cut(s) | 463 |
| BsaI | GGTCTC | 1 cut(s) | 380 |
| BsaJI | CCNNGG | 1 cut(s) | 556 |
| BsaWI | WCCGGW | 2 cut(s) | 48, 570 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 483, 512, 513, 542 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 577 |
| Bse1I | ACTGG | 1 cut(s) | 658 |
| BseDI | CCNNGG | 1 cut(s) | 556 |
| BseGI | GGATG | 1 cut(s) | 453 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 577 |
| BseMII | CTCAG | 2 cut(s) | 48, 445 |
| BseNI | ACTGG | 1 cut(s) | 658 |
| BseRI | GAGGAG | 4 cut(s) | 504, 536, 557, 614 |
| BseSI | GKGCMC | 1 cut(s) | 428 |
| BseXI | GCAGC | 1 cut(s) | 158 |
| BsgI | GTGCAG | 1 cut(s) | 652 |
| Bsh1236I | CGCG | 1 cut(s) | 578 |
| Bsh1285I | CGRYCG | 1 cut(s) | 206 |
| BshFI | GGCC | 1 cut(s) | 555 |
| BsiEI | CGRYCG | 1 cut(s) | 206 |
| BsiHKAI | GWGCWC | 5 cut(s) | 428, 549, 585, 606, 649 |
| BsiSI | CCGG | 2 cut(s) | 49, 571 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 577 |
| BsmAI | GTCTC | 1 cut(s) | 380 |
| BsnI | GGCC | 1 cut(s) | 555 |
| Bso31I | GGTCTC | 1 cut(s) | 380 |
| Bsp1286I | GDGCHC | 5 cut(s) | 428, 549, 585, 606, 649 |
| Bsp143I | GATC | 2 cut(s) | 203, 466 |
| BspACI | CCGC | 3 cut(s) | 578, 596, 618 |
| BspANI | GGCC | 1 cut(s) | 555 |
| BspCNI | CTCAG | 2 cut(s) | 47, 444 |
| BspFNI | CGCG | 1 cut(s) | 578 |
| BspLI | GGNNCC | 1 cut(s) | 569 |
| BspTNI | GGTCTC | 1 cut(s) | 380 |
| BsrI | ACTGG | 1 cut(s) | 658 |
| BssECI | CCNNGG | 1 cut(s) | 556 |
| BssMI | GATC | 2 cut(s) | 203, 466 |
| Bst4CI | ACNGT | 2 cut(s) | 74, 505 |
| Bst6I | CTCTTC | 1 cut(s) | 242 |
| BstC8I | GCNNGC | 1 cut(s) | 428 |
| BstDEI | CTNAG | 3 cut(s) | 34, 78, 431 |
| BstF5I | GGATG | 1 cut(s) | 453 |
| BstFNI | CGCG | 1 cut(s) | 578 |
| BstHHI | GCGC | 1 cut(s) | 578 |
| BstKTI | GATC | 2 cut(s) | 206, 469 |
| BstMAI | GTCTC | 1 cut(s) | 380 |
| BstMBI | GATC | 2 cut(s) | 203, 466 |
| BstMCI | CGRYCG | 1 cut(s) | 206 |
| BstSLI | GKGCMC | 1 cut(s) | 428 |
| BstUI | CGCG | 1 cut(s) | 578 |
| BstV1I | GCAGC | 1 cut(s) | 158 |
| BsuRI | GGCC | 1 cut(s) | 555 |
| BtrI | CACGTC | 1 cut(s) | 591 |
| BtsCI | GGATG | 1 cut(s) | 453 |
| BtsI | GCAGTG | 1 cut(s) | 369 |
| BtsIMutI | CAGTG | 2 cut(s) | 369, 439 |
| Cac8I | GCNNGC | 1 cut(s) | 428 |
| CfoI | GCGC | 1 cut(s) | 578 |
| Csp6I | GTAC | 1 cut(s) | 75 |
| CviJI | RGCY | 8 cut(s) | 341, 494, 526, 547, 555, 583, 604, 647 |
| CviKI_1 | RGCY | 8 cut(s) | 341, 494, 526, 547, 555, 583, 604, 647 |
| CviQI | GTAC | 1 cut(s) | 75 |
| DdeI | CTNAG | 3 cut(s) | 34, 78, 431 |
| DpnI | GATC | 2 cut(s) | 205, 468 |
| DpnII | GATC | 2 cut(s) | 203, 466 |
| Eam1104I | CTCTTC | 1 cut(s) | 242 |
| EarI | CTCTTC | 1 cut(s) | 242 |
| EciI | GGCGGA | 1 cut(s) | 611 |
| Ecl136II | GAGCTC | 4 cut(s) | 547, 583, 604, 647 |
| Eco24I | GRGCYC | 4 cut(s) | 549, 585, 606, 649 |
| Eco31I | GGTCTC | 1 cut(s) | 380 |
| Eco53kI | GAGCTC | 4 cut(s) | 547, 583, 604, 647 |
| Eco57I | CTGAAG | 2 cut(s) | 195, 231 |
| EcoICRI | GAGCTC | 4 cut(s) | 547, 583, 604, 647 |
| EcoT38I | GRGCYC | 4 cut(s) | 549, 585, 606, 649 |
| FblI | GTMKAC | 1 cut(s) | 7 |
| Fnu4HI | GCNGC | 1 cut(s) | 147 |
| FokI | GGATG | 1 cut(s) | 460 |
| FriOI | GRGCYC | 4 cut(s) | 549, 585, 606, 649 |
| Fsp4HI | GCNGC | 1 cut(s) | 147 |
| FspBI | CTAG | 2 cut(s) | 290, 664 |
| GlaI | GCGC | 1 cut(s) | 577 |
| GluI | GCNGC | 1 cut(s) | 147 |
| GsuI | CTGGAG | 1 cut(s) | 463 |
| HaeIII | GGCC | 1 cut(s) | 555 |
| HapII | CCGG | 2 cut(s) | 49, 571 |
| HhaI | GCGC | 1 cut(s) | 578 |
| Hin6I | GCGC | 1 cut(s) | 576 |
| HinP1I | GCGC | 1 cut(s) | 576 |
| HinfI | GANTC | 7 cut(s) | 32, 167, 194, 218, 224, 308, 451 |
| HpaII | CCGG | 2 cut(s) | 49, 571 |
| HphI | GGTGA | 3 cut(s) | 10, 245, 526 |
| Hpy166II | GTNNAC | 3 cut(s) | 8, 236, 426 |
| Hpy188I | TCNGA | 7 cut(s) | 37, 67, 125, 160, 223, 229, 313 |
| Hpy188III | TCNNGA | 3 cut(s) | 198, 296, 442 |
| Hpy8I | GTNNAC | 3 cut(s) | 8, 236, 426 |
| Hpy99I | CGWCG | 4 cut(s) | 536, 554, 595, 645 |
| HpyAV | CCTTC | 4 cut(s) | 224, 295, 511, 558 |
| HpyCH4III | ACNGT | 2 cut(s) | 74, 505 |
| HpyCH4IV | ACGT | 3 cut(s) | 86, 534, 590 |
| HpyCH4V | TGCA | 4 cut(s) | 103, 426, 437, 633 |
| HpyF3I | CTNAG | 3 cut(s) | 34, 78, 431 |
| HpySE526I | ACGT | 3 cut(s) | 86, 534, 590 |
| HspAI | GCGC | 1 cut(s) | 576 |
| Kzo9I | GATC | 2 cut(s) | 203, 466 |
| LmnI | GCTCC | 5 cut(s) | 491, 523, 544, 580, 601 |
| LpnPI | CCDG | 9 cut(s) | 62, 113, 128, 183, 404, 427, 464, 480, 584 |
| Lsp1109I | GCAGC | 1 cut(s) | 158 |
| MaeI | CTAG | 2 cut(s) | 290, 664 |
| MaeII | ACGT | 3 cut(s) | 86, 534, 590 |
| MaeIII | GTNAC | 3 cut(s) | 29, 499, 586 |
| MalI | GATC | 2 cut(s) | 205, 468 |
| MboI | GATC | 2 cut(s) | 203, 466 |
| MhlI | GDGCHC | 5 cut(s) | 428, 549, 585, 606, 649 |
| MluCI | AATT | 4 cut(s) | 14, 110, 402, 462 |
| MlyI | GAGTC | 1 cut(s) | 26 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 1 cut(s) | 23 |
| MspI | CCGG | 2 cut(s) | 49, 571 |
| MvnI | CGCG | 1 cut(s) | 578 |
| NdeII | GATC | 2 cut(s) | 203, 466 |
| NlaIV | GGNNCC | 1 cut(s) | 569 |
| NmuCI | GTSAC | 2 cut(s) | 29, 586 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 646 |
| PfeI | GAWTC | 6 cut(s) | 167, 194, 218, 224, 308, 451 |
| PflFI | GACNNNGTC | 1 cut(s) | 639 |
| PkrI | GCNGC | 1 cut(s) | 148 |
| Ple19I | CGATCG | 1 cut(s) | 206 |
| PleI | GAGTC | 1 cut(s) | 26 |
| PpsI | GAGTC | 1 cut(s) | 26 |
| Psp124BI | GAGCTC | 4 cut(s) | 549, 585, 606, 649 |
| Psp1406I | AACGTT | 1 cut(s) | 86 |
| PspN4I | GGNNCC | 1 cut(s) | 569 |
| PsyI | GACNNNGTC | 1 cut(s) | 639 |
| PvuI | CGATCG | 1 cut(s) | 206 |
| RsaI | GTAC | 1 cut(s) | 76 |
| RsaNI | GTAC | 1 cut(s) | 75 |
| RseI | CAYNNNNRTG | 1 cut(s) | 23 |
| SacI | GAGCTC | 4 cut(s) | 549, 585, 606, 649 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 1 cut(s) | 147 |
| Sau3AI | GATC | 2 cut(s) | 203, 466 |
| SchI | GAGTC | 1 cut(s) | 26 |
| SduI | GDGCHC | 5 cut(s) | 428, 549, 585, 606, 649 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 23 |
| SpeI | ACTAGT | 1 cut(s) | 289 |
| Sse9I | AATT | 4 cut(s) | 14, 110, 402, 462 |
| SsiI | CCGC | 3 cut(s) | 578, 596, 618 |
| SspMI | CTAG | 2 cut(s) | 290, 664 |
| SstI | GAGCTC | 4 cut(s) | 549, 585, 606, 649 |
| TaaI | ACNGT | 2 cut(s) | 74, 505 |
| TaiI | ACGT | 3 cut(s) | 89, 537, 593 |
| TaqI | TCGA | 4 cut(s) | 117, 206, 531, 643 |
| TasI | AATT | 4 cut(s) | 14, 110, 402, 462 |
| TatI | WGTACW | 1 cut(s) | 74 |
| TfiI | GAWTC | 6 cut(s) | 167, 194, 218, 224, 308, 451 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 2 cut(s) | 369, 439 |
| TseFI | GTSAC | 2 cut(s) | 29, 586 |
| TseI | GCWGC | 1 cut(s) | 146 |
| Tsp45I | GTSAC | 2 cut(s) | 29, 586 |
| TspDTI | ATGAA | 3 cut(s) | 177, 204, 231 |
| TspRI | CASTG | 2 cut(s) | 369, 439 |
| Tth111I | GACNNNGTC | 1 cut(s) | 639 |
| VneI | GTGCAC | 1 cut(s) | 424 |
| XapI | RAATTY | 2 cut(s) | 14, 110 |
| XmiI | GTMKAC | 1 cut(s) | 7 |
| XspI | CTAG | 2 cut(s) | 290, 664 |