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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 379 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 104 |
| AciI | CCGC | 1 cut(s) | 398 |
| AclI | AACGTT | 1 cut(s) | 573 |
| AclWI | GGATC | 2 cut(s) | 291, 414 |
| AcuI | CTGAAG | 2 cut(s) | 60, 232 |
| AcyI | GRCGYC | 1 cut(s) | 195 |
| AfaI | GTAC | 1 cut(s) | 644 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 41, 104, 337, 585, 634 |
| AgsI | TTSAA | 3 cut(s) | 55, 118, 320 |
| AjnI | CCWGG | 1 cut(s) | 384 |
| AluBI | AGCT | 8 cut(s) | 157, 164, 263, 296, 337, 366, 505, 568 |
| AluI | AGCT | 8 cut(s) | 157, 164, 263, 296, 337, 366, 505, 568 |
| Alw21I | GWGCWC | 1 cut(s) | 265 |
| Alw26I | GTCTC | 2 cut(s) | 97, 467 |
| AlwI | GGATC | 2 cut(s) | 291, 414 |
| AoxI | GGCC | 1 cut(s) | 561 |
| ApeKI | GCWGC | 2 cut(s) | 108, 461 |
| AspS9I | GGNCC | 2 cut(s) | 561, 673 |
| AsuC2I | CCSGG | 1 cut(s) | 199 |
| AsuHPI | GGTGA | 2 cut(s) | 20, 85 |
| AvaII | GGWCC | 1 cut(s) | 673 |
| BaeGI | GKGCMC | 1 cut(s) | 384 |
| BanI | GGYRCC | 1 cut(s) | 379 |
| BanII | GRGCYC | 1 cut(s) | 265 |
| Bbv12I | GWGCWC | 1 cut(s) | 265 |
| BbvI | GCAGC | 2 cut(s) | 120, 473 |
| BccI | CCATC | 2 cut(s) | 79, 448 |
| BceAI | ACGGC | 1 cut(s) | 194 |
| BciT130I | CCWGG | 1 cut(s) | 386 |
| BclI | TGATCA | 1 cut(s) | 219 |
| BcnI | CCSGG | 1 cut(s) | 199 |
| BcoDI | GTCTC | 2 cut(s) | 97, 467 |
| BfaI | CTAG | 2 cut(s) | 297, 506 |
| BglII | AGATCT | 1 cut(s) | 553 |
| BisI | GCNGC | 2 cut(s) | 109, 462 |
| BlsI | GCNGC | 2 cut(s) | 110, 463 |
| Bme1390I | CCNGG | 2 cut(s) | 199, 386 |
| Bme18I | GGWCC | 1 cut(s) | 673 |
| BmgT120I | GGNCC | 2 cut(s) | 561, 673 |
| BmiI | GGNNCC | 2 cut(s) | 381, 675 |
| BmrFI | CCNGG | 2 cut(s) | 199, 386 |
| BmrI | ACTGGG | 1 cut(s) | 385 |
| BmuI | ACTGGG | 1 cut(s) | 385 |
| BoxI | GACNNNNGTC | 1 cut(s) | 304 |
| BpmI | CTGGAG | 1 cut(s) | 620 |
| BpuEI | CTTGAG | 1 cut(s) | 317 |
| BpuMI | CCSGG | 1 cut(s) | 199 |
| BsaBI | GATNNNNATC | 1 cut(s) | 282 |
| BsaHI | GRCGYC | 1 cut(s) | 195 |
| BsaJI | CCNNGG | 2 cut(s) | 302, 384 |
| BsaWI | WCCGGW | 1 cut(s) | 257 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 333, 363 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 41, 104, 337, 585, 634 |
| Bse1I | ACTGG | 3 cut(s) | 327, 380, 603 |
| Bse8I | GATNNNNATC | 1 cut(s) | 282 |
| BseBI | CCWGG | 1 cut(s) | 386 |
| BseDI | CCNNGG | 2 cut(s) | 302, 384 |
| BseGI | GGATG | 2 cut(s) | 16, 610 |
| BseJI | GATNNNNATC | 1 cut(s) | 282 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 41, 104, 337, 585, 634 |
| BseMII | CTCAG | 2 cut(s) | 125, 156 |
| BseNI | ACTGG | 3 cut(s) | 327, 380, 603 |
| BseSI | GKGCMC | 1 cut(s) | 384 |
| BseXI | GCAGC | 2 cut(s) | 120, 473 |
| BseYI | CCCAGC | 1 cut(s) | 337 |
| BsgI | GTGCAG | 1 cut(s) | 371 |
| BshFI | GGCC | 1 cut(s) | 563 |
| BshNI | GGYRCC | 1 cut(s) | 379 |
| BsiHKAI | GWGCWC | 1 cut(s) | 265 |
| BsiSI | CCGG | 3 cut(s) | 35, 199, 258 |
| BslFI | GGGAC | 1 cut(s) | 659 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 41, 104, 337, 585, 634 |
| BsmAI | GTCTC | 2 cut(s) | 97, 467 |
| BsmFI | GGGAC | 1 cut(s) | 659 |
| BsmI | GAATGC | 1 cut(s) | 544 |
| BsnI | GGCC | 1 cut(s) | 563 |
| Bsp1286I | GDGCHC | 2 cut(s) | 265, 384 |
| Bsp1407I | TGTACA | 1 cut(s) | 642 |
| Bsp143I | GATC | 4 cut(s) | 219, 283, 406, 553 |
| BspACI | CCGC | 1 cut(s) | 398 |
| BspANI | GGCC | 1 cut(s) | 563 |
| BspCNI | CTCAG | 2 cut(s) | 126, 157 |
| BspLI | GGNNCC | 2 cut(s) | 381, 675 |
| BspPI | GGATC | 2 cut(s) | 291, 414 |
| BspT107I | GGYRCC | 1 cut(s) | 379 |
| BsrGI | TGTACA | 1 cut(s) | 642 |
| BsrI | ACTGG | 3 cut(s) | 327, 380, 603 |
| BssECI | CCNNGG | 2 cut(s) | 302, 384 |
| BssMI | GATC | 4 cut(s) | 219, 283, 406, 553 |
| BssNI | GRCGYC | 1 cut(s) | 195 |
| Bst2UI | CCWGG | 1 cut(s) | 386 |
| Bst4CI | ACNGT | 1 cut(s) | 303 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 396 |
| BstACI | GRCGYC | 1 cut(s) | 195 |
| BstAUI | TGTACA | 1 cut(s) | 642 |
| BstC8I | GCNNGC | 1 cut(s) | 391 |
| BstDEI | CTNAG | 2 cut(s) | 134, 165 |
| BstDSI | CCRYGG | 1 cut(s) | 302 |
| BstF5I | GGATG | 2 cut(s) | 16, 610 |
| BstKTI | GATC | 4 cut(s) | 222, 286, 409, 556 |
| BstMAI | GTCTC | 2 cut(s) | 97, 467 |
| BstMBI | GATC | 4 cut(s) | 219, 283, 406, 553 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 395 |
| BstNI | CCWGG | 1 cut(s) | 386 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 304 |
| BstSCI | CCNGG | 2 cut(s) | 197, 384 |
| BstSLI | GKGCMC | 1 cut(s) | 384 |
| BstV1I | GCAGC | 2 cut(s) | 120, 473 |
| BstX2I | RGATCY | 2 cut(s) | 283, 553 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 493 |
| BstYI | RGATCY | 2 cut(s) | 283, 553 |
| BsuRI | GGCC | 1 cut(s) | 563 |
| BtgI | CCRYGG | 1 cut(s) | 302 |
| BtsCI | GGATG | 2 cut(s) | 16, 610 |
| Cac8I | GCNNGC | 1 cut(s) | 391 |
| Cfr13I | GGNCC | 2 cut(s) | 561, 673 |
| CseI | GACGC | 1 cut(s) | 203 |
| Csp6I | GTAC | 1 cut(s) | 643 |
| CviAII | CATG | 1 cut(s) | 273 |
| CviQI | GTAC | 1 cut(s) | 643 |
| DdeI | CTNAG | 2 cut(s) | 134, 165 |
| DpnI | GATC | 4 cut(s) | 221, 285, 408, 555 |
| DpnII | GATC | 4 cut(s) | 219, 283, 406, 553 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 396 |
| EarI | CTCTTC | 2 cut(s) | 75, 396 |
| Ecl136II | GAGCTC | 1 cut(s) | 263 |
| Eco24I | GRGCYC | 1 cut(s) | 265 |
| Eco47I | GGWCC | 1 cut(s) | 673 |
| Eco53kI | GAGCTC | 1 cut(s) | 263 |
| Eco57I | CTGAAG | 2 cut(s) | 60, 232 |
| EcoICRI | GAGCTC | 1 cut(s) | 263 |
| EcoO109I | RGGNCCY | 1 cut(s) | 673 |
| EcoRII | CCWGG | 1 cut(s) | 384 |
| EcoT38I | GRGCYC | 1 cut(s) | 265 |
| FaeI | CATG | 1 cut(s) | 276 |
| FaiI | YATR | 4 cut(s) | 274, 281, 559, 685 |
| FaqI | GGGAC | 1 cut(s) | 659 |
| FatI | CATG | 1 cut(s) | 272 |
| FbaI | TGATCA | 1 cut(s) | 219 |
| Fnu4HI | GCNGC | 2 cut(s) | 109, 462 |
| FokI | GGATG | 2 cut(s) | 23, 617 |
| FriOI | GRGCYC | 1 cut(s) | 265 |
| Fsp4HI | GCNGC | 2 cut(s) | 109, 462 |
| FspBI | CTAG | 2 cut(s) | 297, 506 |
| GluI | GCNGC | 2 cut(s) | 109, 462 |
| GsaI | CCCAGC | 1 cut(s) | 341 |
| GsuI | CTGGAG | 1 cut(s) | 620 |
| HaeIII | GGCC | 1 cut(s) | 563 |
| HapII | CCGG | 3 cut(s) | 35, 199, 258 |
| HgaI | GACGC | 1 cut(s) | 203 |
| Hin1I | GRCGYC | 1 cut(s) | 195 |
| Hin1II | CATG | 1 cut(s) | 276 |
| HindIII | AAGCTT | 1 cut(s) | 364 |
| HinfI | GANTC | 1 cut(s) | 149 |
| HpaII | CCGG | 3 cut(s) | 35, 199, 258 |
| HphI | GGTGA | 2 cut(s) | 20, 85 |
| Hpy166II | GTNNAC | 1 cut(s) | 61 |
| Hpy188III | TCNNGA | 2 cut(s) | 16, 133 |
| Hpy8I | GTNNAC | 1 cut(s) | 61 |
| HpyAV | CCTTC | 2 cut(s) | 35, 41 |
| HpyCH4III | ACNGT | 1 cut(s) | 303 |
| HpyCH4IV | ACGT | 1 cut(s) | 573 |
| HpyCH4V | TGCA | 2 cut(s) | 352, 542 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 395 |
| HpyF3I | CTNAG | 2 cut(s) | 134, 165 |
| HpySE526I | ACGT | 1 cut(s) | 573 |
| Hsp92I | GRCGYC | 1 cut(s) | 195 |
| Hsp92II | CATG | 1 cut(s) | 276 |
| Ksp22I | TGATCA | 1 cut(s) | 219 |
| Kzo9I | GATC | 4 cut(s) | 219, 283, 406, 553 |
| LmnI | GCTCC | 1 cut(s) | 260 |
| Lsp1109I | GCAGC | 2 cut(s) | 120, 473 |
| MaeI | CTAG | 2 cut(s) | 297, 506 |
| MaeII | ACGT | 1 cut(s) | 573 |
| MaeIII | GTNAC | 1 cut(s) | 13 |
| MalI | GATC | 4 cut(s) | 221, 285, 408, 555 |
| MboI | GATC | 4 cut(s) | 219, 283, 406, 553 |
| MboII | GAAGA | 6 cut(s) | 92, 130, 214, 235, 238, 413 |
| MflI | RGATCY | 2 cut(s) | 283, 553 |
| MhlI | GDGCHC | 2 cut(s) | 265, 384 |
| MluCI | AATT | 2 cut(s) | 267, 315 |
| MseI | TTAA | 2 cut(s) | 170, 591 |
| MspA1I | CMGCKG | 1 cut(s) | 164 |
| MspI | CCGG | 3 cut(s) | 35, 199, 258 |
| MspR9I | CCNGG | 2 cut(s) | 199, 386 |
| Mva1269I | GAATGC | 1 cut(s) | 544 |
| MvaI | CCWGG | 1 cut(s) | 386 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 395 |
| NciI | CCSGG | 1 cut(s) | 199 |
| NdeII | GATC | 4 cut(s) | 219, 283, 406, 553 |
| NlaIII | CATG | 1 cut(s) | 276 |
| NlaIV | GGNNCC | 2 cut(s) | 381, 675 |
| NmuCI | GTSAC | 1 cut(s) | 13 |
| PctI | GAATGC | 1 cut(s) | 544 |
| PfeI | GAWTC | 1 cut(s) | 149 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 104 |
| PkrI | GCNGC | 2 cut(s) | 110, 463 |
| PpuMI | RGGWCCY | 1 cut(s) | 673 |
| PshAI | GACNNNNGTC | 1 cut(s) | 304 |
| Psp124BI | GAGCTC | 1 cut(s) | 265 |
| Psp1406I | AACGTT | 1 cut(s) | 573 |
| Psp5II | RGGWCCY | 1 cut(s) | 673 |
| Psp6I | CCWGG | 1 cut(s) | 384 |
| PspFI | CCCAGC | 1 cut(s) | 337 |
| PspGI | CCWGG | 1 cut(s) | 384 |
| PspN4I | GGNNCC | 2 cut(s) | 381, 675 |
| PspPI | GGNCC | 2 cut(s) | 561, 673 |
| PspPPI | RGGWCCY | 1 cut(s) | 673 |
| PsuI | RGATCY | 2 cut(s) | 283, 553 |
| PvuII | CAGCTG | 1 cut(s) | 164 |
| RsaI | GTAC | 1 cut(s) | 644 |
| RsaNI | GTAC | 1 cut(s) | 643 |
| SacI | GAGCTC | 1 cut(s) | 265 |
| SaqAI | TTAA | 2 cut(s) | 170, 591 |
| SatI | GCNGC | 2 cut(s) | 109, 462 |
| Sau3AI | GATC | 4 cut(s) | 219, 283, 406, 553 |
| Sau96I | GGNCC | 2 cut(s) | 561, 673 |
| ScrFI | CCNGG | 2 cut(s) | 199, 386 |
| SduI | GDGCHC | 2 cut(s) | 265, 384 |
| SinI | GGWCC | 1 cut(s) | 673 |
| SmlI | CTYRAG | 1 cut(s) | 332 |
| SmoI | CTYRAG | 1 cut(s) | 332 |
| Sse9I | AATT | 2 cut(s) | 267, 315 |
| SsiI | CCGC | 1 cut(s) | 398 |
| SspI | AATATT | 1 cut(s) | 102 |
| SspMI | CTAG | 2 cut(s) | 297, 506 |
| SstI | GAGCTC | 1 cut(s) | 265 |
| StyD4I | CCNGG | 2 cut(s) | 197, 384 |
| TaaI | ACNGT | 1 cut(s) | 303 |
| TaiI | ACGT | 1 cut(s) | 576 |
| TaqI | TCGA | 1 cut(s) | 152 |
| TasI | AATT | 2 cut(s) | 267, 315 |
| TatI | WGTACW | 1 cut(s) | 642 |
| TfiI | GAWTC | 1 cut(s) | 149 |
| Tru1I | TTAA | 2 cut(s) | 170, 591 |
| Tru9I | TTAA | 2 cut(s) | 170, 591 |
| TseFI | GTSAC | 1 cut(s) | 13 |
| TseI | GCWGC | 2 cut(s) | 108, 461 |
| Tsp45I | GTSAC | 1 cut(s) | 13 |
| TspDTI | ATGAA | 4 cut(s) | 17, 188, 429, 621 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 104 |
| VpaK11BI | GGWCC | 1 cut(s) | 673 |
| XspI | CTAG | 2 cut(s) | 297, 506 |