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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 184, 276 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 206 |
| AciI | CCGC | 1 cut(s) | 371 |
| AclWI | GGATC | 3 cut(s) | 106, 180, 350 |
| AcuI | CTGAAG | 2 cut(s) | 394, 509 |
| AcyI | GRCGYC | 2 cut(s) | 181, 273 |
| AfaI | GTAC | 3 cut(s) | 389, 501, 532 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 206, 435 |
| AgsI | TTSAA | 4 cut(s) | 13, 215, 397, 484 |
| AjnI | CCWGG | 1 cut(s) | 570 |
| AleI | CACNNNNGTG | 1 cut(s) | 233 |
| AluBI | AGCT | 1 cut(s) | 334 |
| AluI | AGCT | 1 cut(s) | 334 |
| Alw21I | GWGCWC | 3 cut(s) | 230, 240, 336 |
| AlwI | GGATC | 3 cut(s) | 106, 180, 350 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 563 |
| AoxI | GGCC | 2 cut(s) | 489, 520 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspS9I | GGNCC | 3 cut(s) | 220, 439, 489 |
| AvaII | GGWCC | 2 cut(s) | 220, 439 |
| BanII | GRGCYC | 1 cut(s) | 336 |
| BbsI | GAAGAC | 2 cut(s) | 465, 553 |
| Bbv12I | GWGCWC | 3 cut(s) | 230, 240, 336 |
| BccI | CCATC | 2 cut(s) | 490, 512 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 316, 350 |
| BciT130I | CCWGG | 1 cut(s) | 572 |
| BfaI | CTAG | 1 cut(s) | 503 |
| BisI | GCNGC | 1 cut(s) | 372 |
| BlsI | GCNGC | 1 cut(s) | 373 |
| BmcAI | AGTACT | 1 cut(s) | 532 |
| Bme1390I | CCNGG | 1 cut(s) | 572 |
| Bme18I | GGWCC | 2 cut(s) | 220, 439 |
| BmgT120I | GGNCC | 3 cut(s) | 220, 439, 489 |
| BmiI | GGNNCC | 2 cut(s) | 221, 440 |
| BmrFI | CCNGG | 1 cut(s) | 572 |
| BmsI | GCATC | 1 cut(s) | 266 |
| BpiI | GAAGAC | 2 cut(s) | 465, 553 |
| BpmI | CTGGAG | 1 cut(s) | 172 |
| Bpu10I | CCTNAGC | 1 cut(s) | 224 |
| BpuEI | CTTGAG | 1 cut(s) | 224 |
| BsaHI | GRCGYC | 2 cut(s) | 181, 273 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 206, 435 |
| Bse1I | ACTGG | 4 cut(s) | 115, 211, 538, 568 |
| BseBI | CCWGG | 1 cut(s) | 572 |
| BseGI | GGATG | 2 cut(s) | 523, 588 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 206, 435 |
| BseMII | CTCAG | 2 cut(s) | 215, 337 |
| BseNI | ACTGG | 4 cut(s) | 115, 211, 538, 568 |
| BshFI | GGCC | 2 cut(s) | 491, 522 |
| BsiHKAI | GWGCWC | 3 cut(s) | 230, 240, 336 |
| BslFI | GGGAC | 2 cut(s) | 233, 452 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 206, 435 |
| BsmFI | GGGAC | 2 cut(s) | 233, 452 |
| BsmI | GAATGC | 1 cut(s) | 401 |
| BsnI | GGCC | 2 cut(s) | 491, 522 |
| Bsp1286I | GDGCHC | 3 cut(s) | 230, 240, 336 |
| Bsp143I | GATC | 6 cut(s) | 27, 111, 172, 307, 355, 554 |
| BspACI | CCGC | 1 cut(s) | 371 |
| BspANI | GGCC | 2 cut(s) | 491, 522 |
| BspCNI | CTCAG | 2 cut(s) | 216, 336 |
| BspLI | GGNNCC | 2 cut(s) | 221, 440 |
| BspPI | GGATC | 3 cut(s) | 106, 180, 350 |
| BsrI | ACTGG | 4 cut(s) | 115, 211, 538, 568 |
| BssMI | GATC | 6 cut(s) | 27, 111, 172, 307, 355, 554 |
| BssNI | GRCGYC | 2 cut(s) | 181, 273 |
| Bst2UI | CCWGG | 1 cut(s) | 572 |
| Bst4CI | ACNGT | 2 cut(s) | 295, 479 |
| Bst6I | CTCTTC | 1 cut(s) | 398 |
| BstACI | GRCGYC | 2 cut(s) | 181, 273 |
| BstDEI | CTNAG | 4 cut(s) | 140, 224, 323, 360 |
| BstF5I | GGATG | 2 cut(s) | 523, 588 |
| BstKTI | GATC | 6 cut(s) | 30, 114, 175, 310, 358, 557 |
| BstMBI | GATC | 6 cut(s) | 27, 111, 172, 307, 355, 554 |
| BstNI | CCWGG | 1 cut(s) | 572 |
| BstSCI | CCNGG | 1 cut(s) | 570 |
| BstV2I | GAAGAC | 2 cut(s) | 465, 553 |
| BstX2I | RGATCY | 1 cut(s) | 111 |
| BstYI | RGATCY | 1 cut(s) | 111 |
| BsuRI | GGCC | 2 cut(s) | 491, 522 |
| BtsCI | GGATG | 2 cut(s) | 523, 588 |
| BtsI | GCAGTG | 1 cut(s) | 374 |
| BtsIMutI | CAGTG | 2 cut(s) | 122, 374 |
| CaiI | CAGNNNCTG | 1 cut(s) | 563 |
| Cfr13I | GGNCC | 3 cut(s) | 220, 439, 489 |
| Csp6I | GTAC | 3 cut(s) | 388, 500, 531 |
| CviAII | CATG | 3 cut(s) | 280, 385, 435 |
| CviJI | RGCY | 3 cut(s) | 334, 491, 522 |
| CviKI_1 | RGCY | 3 cut(s) | 334, 491, 522 |
| CviQI | GTAC | 3 cut(s) | 388, 500, 531 |
| DdeI | CTNAG | 4 cut(s) | 140, 224, 323, 360 |
| DpnI | GATC | 6 cut(s) | 29, 113, 174, 309, 357, 556 |
| DpnII | GATC | 6 cut(s) | 27, 111, 172, 307, 355, 554 |
| Eam1104I | CTCTTC | 1 cut(s) | 398 |
| EarI | CTCTTC | 1 cut(s) | 398 |
| Ecl136II | GAGCTC | 1 cut(s) | 334 |
| Eco24I | GRGCYC | 1 cut(s) | 336 |
| Eco47I | GGWCC | 2 cut(s) | 220, 439 |
| Eco53kI | GAGCTC | 1 cut(s) | 334 |
| Eco57I | CTGAAG | 2 cut(s) | 394, 509 |
| EcoICRI | GAGCTC | 1 cut(s) | 334 |
| EcoO109I | RGGNCCY | 2 cut(s) | 220, 439 |
| EcoRII | CCWGG | 1 cut(s) | 570 |
| EcoT22I | ATGCAT | 1 cut(s) | 403 |
| EcoT38I | GRGCYC | 1 cut(s) | 336 |
| FaeI | CATG | 3 cut(s) | 283, 388, 438 |
| FaiI | YATR | 7 cut(s) | 177, 194, 281, 386, 436, 464, 473 |
| FaqI | GGGAC | 2 cut(s) | 233, 452 |
| FatI | CATG | 3 cut(s) | 279, 384, 434 |
| Fnu4HI | GCNGC | 1 cut(s) | 372 |
| FokI | GGATG | 2 cut(s) | 530, 595 |
| FriOI | GRGCYC | 1 cut(s) | 336 |
| Fsp4HI | GCNGC | 1 cut(s) | 372 |
| FspBI | CTAG | 1 cut(s) | 503 |
| GluI | GCNGC | 1 cut(s) | 372 |
| GsuI | CTGGAG | 1 cut(s) | 172 |
| HaeIII | GGCC | 2 cut(s) | 491, 522 |
| Hin1I | GRCGYC | 2 cut(s) | 181, 273 |
| Hin1II | CATG | 3 cut(s) | 283, 388, 438 |
| HincII | GTYRAC | 1 cut(s) | 277 |
| HindII | GTYRAC | 1 cut(s) | 277 |
| HinfI | GANTC | 1 cut(s) | 567 |
| Hpy166II | GTNNAC | 1 cut(s) | 277 |
| Hpy188I | TCNGA | 2 cut(s) | 528, 559 |
| Hpy188III | TCNNGA | 2 cut(s) | 151, 311 |
| Hpy8I | GTNNAC | 1 cut(s) | 277 |
| HpyAV | CCTTC | 3 cut(s) | 226, 247, 533 |
| HpyCH4III | ACNGT | 2 cut(s) | 295, 479 |
| HpyCH4IV | ACGT | 2 cut(s) | 181, 273 |
| HpyCH4V | TGCA | 2 cut(s) | 135, 401 |
| HpyF3I | CTNAG | 4 cut(s) | 140, 224, 323, 360 |
| HpySE526I | ACGT | 2 cut(s) | 181, 273 |
| Hsp92I | GRCGYC | 2 cut(s) | 181, 273 |
| Hsp92II | CATG | 3 cut(s) | 283, 388, 438 |
| Kzo9I | GATC | 6 cut(s) | 27, 111, 172, 307, 355, 554 |
| LmnI | GCTCC | 1 cut(s) | 331 |
| LweI | GCATC | 1 cut(s) | 266 |
| MaeI | CTAG | 1 cut(s) | 503 |
| MaeII | ACGT | 2 cut(s) | 181, 273 |
| MalI | GATC | 6 cut(s) | 29, 113, 174, 309, 357, 556 |
| MboI | GATC | 6 cut(s) | 27, 111, 172, 307, 355, 554 |
| MboII | GAAGA | 9 cut(s) | 37, 252, 355, 358, 385, 397, 400, 470, 558 |
| MfeI | CAATTG | 1 cut(s) | 484 |
| MflI | RGATCY | 1 cut(s) | 111 |
| MhlI | GDGCHC | 3 cut(s) | 230, 240, 336 |
| MluCI | AATT | 2 cut(s) | 366, 484 |
| MnlI | CCTC | 7 cut(s) | 49, 75, 238, 276, 401, 452, 573 |
| Mph1103I | ATGCAT | 1 cut(s) | 403 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MslI | CAYNNNNRTG | 1 cut(s) | 233 |
| MspR9I | CCNGG | 1 cut(s) | 572 |
| MunI | CAATTG | 1 cut(s) | 484 |
| Mva1269I | GAATGC | 1 cut(s) | 401 |
| MvaI | CCWGG | 1 cut(s) | 572 |
| NdeII | GATC | 6 cut(s) | 27, 111, 172, 307, 355, 554 |
| NlaIII | CATG | 3 cut(s) | 283, 388, 438 |
| NlaIV | GGNNCC | 2 cut(s) | 221, 440 |
| NmeAIII | GCCGAG | 1 cut(s) | 315 |
| NsiI | ATGCAT | 1 cut(s) | 403 |
| OliI | CACNNNNGTG | 1 cut(s) | 233 |
| PctI | GAATGC | 1 cut(s) | 401 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 1 cut(s) | 567 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 206 |
| PfoI | TCCNGGA | 1 cut(s) | 570 |
| PkrI | GCNGC | 1 cut(s) | 373 |
| PpuMI | RGGWCCY | 2 cut(s) | 220, 439 |
| Psp124BI | GAGCTC | 1 cut(s) | 336 |
| Psp5II | RGGWCCY | 2 cut(s) | 220, 439 |
| Psp6I | CCWGG | 1 cut(s) | 570 |
| PspGI | CCWGG | 1 cut(s) | 570 |
| PspN4I | GGNNCC | 2 cut(s) | 221, 440 |
| PspPI | GGNCC | 3 cut(s) | 220, 439, 489 |
| PspPPI | RGGWCCY | 2 cut(s) | 220, 439 |
| PstNI | CAGNNNCTG | 1 cut(s) | 563 |
| PsuI | RGATCY | 1 cut(s) | 111 |
| RsaI | GTAC | 3 cut(s) | 389, 501, 532 |
| RsaNI | GTAC | 3 cut(s) | 388, 500, 531 |
| RseI | CAYNNNNRTG | 1 cut(s) | 233 |
| SacI | GAGCTC | 1 cut(s) | 336 |
| SatI | GCNGC | 1 cut(s) | 372 |
| Sau3AI | GATC | 6 cut(s) | 27, 111, 172, 307, 355, 554 |
| Sau96I | GGNCC | 3 cut(s) | 220, 439, 489 |
| ScaI | AGTACT | 1 cut(s) | 532 |
| ScrFI | CCNGG | 1 cut(s) | 572 |
| SduI | GDGCHC | 3 cut(s) | 230, 240, 336 |
| SetI | ASST | 9 cut(s) | 184, 225, 237, 276, 307, 336, 393, 431, 444 |
| SfaNI | GCATC | 1 cut(s) | 266 |
| SinI | GGWCC | 2 cut(s) | 220, 439 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 233 |
| SmlI | CTYRAG | 1 cut(s) | 239 |
| SmoI | CTYRAG | 1 cut(s) | 239 |
| Sse9I | AATT | 2 cut(s) | 366, 484 |
| SsiI | CCGC | 1 cut(s) | 371 |
| SspMI | CTAG | 1 cut(s) | 503 |
| SstI | GAGCTC | 1 cut(s) | 336 |
| StyD4I | CCNGG | 1 cut(s) | 570 |
| TaaI | ACNGT | 2 cut(s) | 295, 479 |
| TaiI | ACGT | 2 cut(s) | 184, 276 |
| TaqI | TCGA | 2 cut(s) | 263, 422 |
| TasI | AATT | 2 cut(s) | 366, 484 |
| TatI | WGTACW | 1 cut(s) | 530 |
| TauI | GCSGC | 1 cut(s) | 374 |
| TfiI | GAWTC | 1 cut(s) | 567 |
| TscAI | CASTG | 2 cut(s) | 122, 381 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 265 |
| TspRI | CASTG | 2 cut(s) | 122, 381 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 206 |
| VpaK11BI | GGWCC | 2 cut(s) | 220, 439 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| XspI | CTAG | 1 cut(s) | 503 |
| ZraI | GACGTC | 2 cut(s) | 182, 274 |
| ZrmI | AGTACT | 1 cut(s) | 532 |
| Zsp2I | ATGCAT | 1 cut(s) | 403 |