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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 260 |
| AccBSI | CCGCTC | 1 cut(s) | 372 |
| AciI | CCGC | 3 cut(s) | 27, 223, 372 |
| AcsI | RAATTY | 1 cut(s) | 113 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 181 |
| AgsI | TTSAA | 2 cut(s) | 74, 166 |
| AluBI | AGCT | 1 cut(s) | 8 |
| AluI | AGCT | 1 cut(s) | 8 |
| Alw26I | GTCTC | 1 cut(s) | 239 |
| ApeKI | GCWGC | 3 cut(s) | 5, 151, 375 |
| ApoI | RAATTY | 1 cut(s) | 113 |
| AspS9I | GGNCC | 1 cut(s) | 328 |
| AvaII | GGWCC | 1 cut(s) | 328 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 44, 77 |
| BbsI | GAAGAC | 2 cut(s) | 72, 313 |
| BbvI | GCAGC | 3 cut(s) | 17, 163, 387 |
| BccI | CCATC | 2 cut(s) | 258, 330 |
| BcoDI | GTCTC | 1 cut(s) | 239 |
| BfaI | CTAG | 1 cut(s) | 320 |
| BisI | GCNGC | 4 cut(s) | 6, 152, 373, 376 |
| BlsI | GCNGC | 4 cut(s) | 7, 153, 374, 377 |
| Bme18I | GGWCC | 1 cut(s) | 328 |
| BmgT120I | GGNCC | 1 cut(s) | 328 |
| BmiI | GGNNCC | 2 cut(s) | 32, 197 |
| BmsI | GCATC | 2 cut(s) | 87, 161 |
| BpiI | GAAGAC | 2 cut(s) | 72, 313 |
| BpuEI | CTTGAG | 2 cut(s) | 41, 221 |
| BsaAI | YACGTR | 1 cut(s) | 142 |
| BsaJI | CCNNGG | 3 cut(s) | 124, 331, 397 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 181 |
| Bse1I | ACTGG | 2 cut(s) | 98, 197 |
| Bse3DI | GCAATG | 1 cut(s) | 369 |
| BseDI | CCNNGG | 3 cut(s) | 124, 331, 397 |
| BseGI | GGATG | 3 cut(s) | 176, 341, 345 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 181 |
| BseMI | GCAATG | 1 cut(s) | 369 |
| BseNI | ACTGG | 2 cut(s) | 98, 197 |
| BseRI | GAGGAG | 1 cut(s) | 358 |
| BseXI | GCAGC | 3 cut(s) | 17, 163, 387 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 181 |
| BsmAI | GTCTC | 1 cut(s) | 239 |
| Bsp143I | GATC | 1 cut(s) | 279 |
| Bsp19I | CCATGG | 1 cut(s) | 331 |
| BspACI | CCGC | 3 cut(s) | 27, 223, 372 |
| BspLI | GGNNCC | 2 cut(s) | 32, 197 |
| BsrBI | CCGCTC | 1 cut(s) | 372 |
| BsrDI | GCAATG | 1 cut(s) | 369 |
| BsrI | ACTGG | 2 cut(s) | 98, 197 |
| BssECI | CCNNGG | 3 cut(s) | 124, 331, 397 |
| BssMI | GATC | 1 cut(s) | 279 |
| BssT1I | CCWWGG | 3 cut(s) | 124, 331, 397 |
| BstBAI | YACGTR | 1 cut(s) | 142 |
| BstDSI | CCRYGG | 1 cut(s) | 331 |
| BstF5I | GGATG | 3 cut(s) | 176, 341, 345 |
| BstKTI | GATC | 1 cut(s) | 282 |
| BstMAI | GTCTC | 1 cut(s) | 239 |
| BstMBI | GATC | 1 cut(s) | 279 |
| BstV1I | GCAGC | 3 cut(s) | 17, 163, 387 |
| BstV2I | GAAGAC | 2 cut(s) | 72, 313 |
| BtgI | CCRYGG | 1 cut(s) | 331 |
| BtsCI | GGATG | 3 cut(s) | 176, 341, 345 |
| Cfr13I | GGNCC | 1 cut(s) | 328 |
| CviAII | CATG | 1 cut(s) | 332 |
| CviJI | RGCY | 2 cut(s) | 8, 154 |
| CviKI_1 | RGCY | 2 cut(s) | 8, 154 |
| DpnI | GATC | 1 cut(s) | 281 |
| DpnII | GATC | 1 cut(s) | 279 |
| Eco130I | CCWWGG | 3 cut(s) | 124, 331, 397 |
| Eco47I | GGWCC | 1 cut(s) | 328 |
| EcoRI | GAATTC | 1 cut(s) | 113 |
| EcoT14I | CCWWGG | 3 cut(s) | 124, 331, 397 |
| ErhI | CCWWGG | 3 cut(s) | 124, 331, 397 |
| FaeI | CATG | 1 cut(s) | 335 |
| FaiI | YATR | 4 cut(s) | 102, 190, 260, 333 |
| FatI | CATG | 1 cut(s) | 331 |
| FauI | CCCGC | 1 cut(s) | 20 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 152, 373, 376 |
| FokI | GGATG | 3 cut(s) | 183, 348, 352 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 152, 373, 376 |
| FspBI | CTAG | 1 cut(s) | 320 |
| GluI | GCNGC | 4 cut(s) | 6, 152, 373, 376 |
| Hin1II | CATG | 1 cut(s) | 335 |
| HinfI | GANTC | 1 cut(s) | 247 |
| Hpy188III | TCNNGA | 1 cut(s) | 232 |
| HpyAV | CCTTC | 3 cut(s) | 188, 235, 319 |
| HpyCH4IV | ACGT | 1 cut(s) | 141 |
| HpyCH4V | TGCA | 2 cut(s) | 121, 362 |
| HpySE526I | ACGT | 1 cut(s) | 141 |
| Hsp92II | CATG | 1 cut(s) | 335 |
| Kzo9I | GATC | 1 cut(s) | 279 |
| LpnPI | CCDG | 6 cut(s) | 79, 167, 178, 265, 324, 372 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 163, 387 |
| LweI | GCATC | 2 cut(s) | 87, 161 |
| MaeI | CTAG | 1 cut(s) | 320 |
| MaeII | ACGT | 1 cut(s) | 141 |
| MaeIII | GTNAC | 1 cut(s) | 96 |
| MalI | GATC | 1 cut(s) | 281 |
| MbiI | CCGCTC | 1 cut(s) | 372 |
| MboI | GATC | 1 cut(s) | 279 |
| MboII | GAAGA | 2 cut(s) | 77, 318 |
| MfeI | CAATTG | 1 cut(s) | 404 |
| MluCI | AATT | 3 cut(s) | 113, 314, 404 |
| MlyI | GAGTC | 1 cut(s) | 241 |
| MnlI | CCTC | 3 cut(s) | 185, 336, 339 |
| MunI | CAATTG | 1 cut(s) | 404 |
| NcoI | CCATGG | 1 cut(s) | 331 |
| NdeII | GATC | 1 cut(s) | 279 |
| NlaIII | CATG | 1 cut(s) | 335 |
| NlaIV | GGNNCC | 2 cut(s) | 32, 197 |
| NmuCI | GTSAC | 1 cut(s) | 96 |
| PkrI | GCNGC | 4 cut(s) | 7, 153, 374, 377 |
| PleI | GAGTC | 1 cut(s) | 241 |
| PpsI | GAGTC | 1 cut(s) | 241 |
| Ppu21I | YACGTR | 1 cut(s) | 142 |
| PsiI | TTATAA | 1 cut(s) | 260 |
| PspN4I | GGNNCC | 2 cut(s) | 32, 197 |
| PspPI | GGNCC | 1 cut(s) | 328 |
| SatI | GCNGC | 4 cut(s) | 6, 152, 373, 376 |
| Sau3AI | GATC | 1 cut(s) | 279 |
| Sau96I | GGNCC | 1 cut(s) | 328 |
| SchI | GAGTC | 1 cut(s) | 241 |
| SetI | ASST | 6 cut(s) | 10, 72, 108, 144, 313, 330 |
| SfaNI | GCATC | 2 cut(s) | 87, 161 |
| SinI | GGWCC | 1 cut(s) | 328 |
| SmlI | CTYRAG | 2 cut(s) | 56, 200 |
| SmoI | CTYRAG | 2 cut(s) | 56, 200 |
| Sse9I | AATT | 3 cut(s) | 113, 314, 404 |
| SsiI | CCGC | 3 cut(s) | 27, 223, 372 |
| SspMI | CTAG | 1 cut(s) | 320 |
| StyI | CCWWGG | 3 cut(s) | 124, 331, 397 |
| TaiI | ACGT | 1 cut(s) | 144 |
| TaqI | TCGA | 1 cut(s) | 81 |
| TasI | AATT | 3 cut(s) | 113, 314, 404 |
| TauI | GCSGC | 1 cut(s) | 375 |
| TseFI | GTSAC | 1 cut(s) | 96 |
| TseI | GCWGC | 3 cut(s) | 5, 151, 375 |
| Tsp45I | GTSAC | 1 cut(s) | 96 |
| TspGWI | ACGGA | 1 cut(s) | 183 |
| VpaK11BI | GGWCC | 1 cut(s) | 328 |
| XapI | RAATTY | 1 cut(s) | 113 |
| XspI | CTAG | 1 cut(s) | 320 |