Protein ALWAYS EARLY
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 2 cut(s) | 45, 72 |
| AfaI | GTAC | 1 cut(s) | 96 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 109 |
| AgeI | ACCGGT | 1 cut(s) | 258 |
| AluBI | AGCT | 1 cut(s) | 31 |
| AluI | AGCT | 1 cut(s) | 31 |
| Ama87I | CYCGRG | 1 cut(s) | 161 |
| AoxI | GGCC | 4 cut(s) | 8, 123, 144, 184 |
| ApeKI | GCWGC | 1 cut(s) | 170 |
| AsiGI | ACCGGT | 1 cut(s) | 258 |
| AspLEI | GCGC | 1 cut(s) | 170 |
| AspS9I | GGNCC | 4 cut(s) | 8, 18, 124, 144 |
| AsuHPI | GGTGA | 2 cut(s) | 92, 235 |
| AvaI | CYCGRG | 1 cut(s) | 161 |
| AvaII | GGWCC | 1 cut(s) | 18 |
| BbvI | GCAGC | 1 cut(s) | 157 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 152, 186 |
| BfoI | RGCGCY | 1 cut(s) | 171 |
| BisI | GCNGC | 1 cut(s) | 171 |
| BlsI | GCNGC | 1 cut(s) | 172 |
| Bme18I | GGWCC | 1 cut(s) | 18 |
| BmeT110I | CYCGRG | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 4 cut(s) | 8, 18, 124, 144 |
| BsaJI | CCNNGG | 1 cut(s) | 162 |
| BsaWI | WCCGGW | 1 cut(s) | 258 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 109 |
| Bse118I | RCCGGY | 1 cut(s) | 258 |
| Bse1I | ACTGG | 1 cut(s) | 77 |
| Bse3DI | GCAATG | 2 cut(s) | 201, 267 |
| BseDI | CCNNGG | 1 cut(s) | 162 |
| BseGI | GGATG | 1 cut(s) | 81 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BseMI | GCAATG | 2 cut(s) | 201, 267 |
| BseNI | ACTGG | 1 cut(s) | 77 |
| BseXI | GCAGC | 1 cut(s) | 157 |
| BshFI | GGCC | 4 cut(s) | 10, 125, 146, 186 |
| BshTI | ACCGGT | 1 cut(s) | 258 |
| BsiHKCI | CYCGRG | 1 cut(s) | 161 |
| BsiSI | CCGG | 1 cut(s) | 259 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BsnI | GGCC | 4 cut(s) | 10, 125, 146, 186 |
| BsoBI | CYCGRG | 1 cut(s) | 161 |
| Bsp143I | GATC | 1 cut(s) | 104 |
| BspANI | GGCC | 4 cut(s) | 10, 125, 146, 186 |
| BspQI | GCTCTTC | 1 cut(s) | 21 |
| BsrDI | GCAATG | 2 cut(s) | 201, 267 |
| BsrFI | RCCGGY | 1 cut(s) | 258 |
| BsrI | ACTGG | 1 cut(s) | 77 |
| BssAI | RCCGGY | 1 cut(s) | 258 |
| BssECI | CCNNGG | 1 cut(s) | 162 |
| BssMI | GATC | 1 cut(s) | 104 |
| Bst6I | CTCTTC | 2 cut(s) | 21, 162 |
| BstF5I | GGATG | 1 cut(s) | 81 |
| BstH2I | RGCGCY | 1 cut(s) | 171 |
| BstHHI | GCGC | 1 cut(s) | 170 |
| BstKTI | GATC | 1 cut(s) | 107 |
| BstMBI | GATC | 1 cut(s) | 104 |
| BstV1I | GCAGC | 1 cut(s) | 157 |
| BsuRI | GGCC | 4 cut(s) | 10, 125, 146, 186 |
| BtsCI | GGATG | 1 cut(s) | 81 |
| BtsIMutI | CAGTG | 1 cut(s) | 21 |
| CfoI | GCGC | 1 cut(s) | 170 |
| Cfr10I | RCCGGY | 1 cut(s) | 258 |
| Cfr13I | GGNCC | 4 cut(s) | 8, 18, 124, 144 |
| Csp6I | GTAC | 1 cut(s) | 95 |
| CspAI | ACCGGT | 1 cut(s) | 258 |
| CviJI | RGCY | 5 cut(s) | 10, 31, 125, 146, 186 |
| CviKI_1 | RGCY | 5 cut(s) | 10, 31, 125, 146, 186 |
| CviQI | GTAC | 1 cut(s) | 95 |
| DpnI | GATC | 1 cut(s) | 106 |
| DpnII | GATC | 1 cut(s) | 104 |
| Eam1104I | CTCTTC | 2 cut(s) | 21, 162 |
| EarI | CTCTTC | 2 cut(s) | 21, 162 |
| Eco32I | GATATC | 1 cut(s) | 53 |
| Eco47I | GGWCC | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 2 cut(s) | 45, 72 |
| Eco88I | CYCGRG | 1 cut(s) | 161 |
| EcoO109I | RGGNCCY | 3 cut(s) | 8, 124, 144 |
| EcoRV | GATATC | 1 cut(s) | 53 |
| FaiI | YATR | 5 cut(s) | 45, 63, 137, 218, 282 |
| Fnu4HI | GCNGC | 1 cut(s) | 171 |
| FokI | GGATG | 1 cut(s) | 88 |
| Fsp4HI | GCNGC | 1 cut(s) | 171 |
| GlaI | GCGC | 1 cut(s) | 169 |
| GluI | GCNGC | 1 cut(s) | 171 |
| HaeII | RGCGCY | 1 cut(s) | 171 |
| HaeIII | GGCC | 4 cut(s) | 10, 125, 146, 186 |
| HapII | CCGG | 1 cut(s) | 259 |
| HhaI | GCGC | 1 cut(s) | 170 |
| Hin6I | GCGC | 1 cut(s) | 168 |
| HinP1I | GCGC | 1 cut(s) | 168 |
| HincII | GTYRAC | 1 cut(s) | 256 |
| HindII | GTYRAC | 1 cut(s) | 256 |
| HpaII | CCGG | 1 cut(s) | 259 |
| HphI | GGTGA | 2 cut(s) | 92, 235 |
| Hpy166II | GTNNAC | 1 cut(s) | 256 |
| Hpy188I | TCNGA | 1 cut(s) | 277 |
| Hpy188III | TCNNGA | 1 cut(s) | 161 |
| Hpy8I | GTNNAC | 1 cut(s) | 256 |
| HpyAV | CCTTC | 2 cut(s) | 41, 73 |
| HpyCH4IV | ACGT | 1 cut(s) | 97 |
| HpyCH4V | TGCA | 1 cut(s) | 267 |
| HpySE526I | ACGT | 1 cut(s) | 97 |
| HspAI | GCGC | 1 cut(s) | 168 |
| Kzo9I | GATC | 1 cut(s) | 104 |
| LguI | GCTCTTC | 1 cut(s) | 21 |
| LpnPI | CCDG | 4 cut(s) | 58, 206, 236, 272 |
| Lsp1109I | GCAGC | 1 cut(s) | 157 |
| MaeII | ACGT | 1 cut(s) | 97 |
| MaeIII | GTNAC | 2 cut(s) | 98, 203 |
| MalI | GATC | 1 cut(s) | 106 |
| MboI | GATC | 1 cut(s) | 104 |
| MboII | GAAGA | 2 cut(s) | 38, 149 |
| MnlI | CCTC | 4 cut(s) | 21, 115, 157, 283 |
| MslI | CAYNNNNRTG | 1 cut(s) | 42 |
| MspI | CCGG | 1 cut(s) | 259 |
| NdeII | GATC | 1 cut(s) | 104 |
| NmuCI | GTSAC | 2 cut(s) | 98, 203 |
| PciSI | GCTCTTC | 1 cut(s) | 21 |
| PinAI | ACCGGT | 1 cut(s) | 258 |
| PkrI | GCNGC | 1 cut(s) | 172 |
| PspPI | GGNCC | 4 cut(s) | 8, 18, 124, 144 |
| RsaI | GTAC | 1 cut(s) | 96 |
| RsaNI | GTAC | 1 cut(s) | 95 |
| RseI | CAYNNNNRTG | 1 cut(s) | 42 |
| SapI | GCTCTTC | 1 cut(s) | 21 |
| SatI | GCNGC | 1 cut(s) | 171 |
| Sau3AI | GATC | 1 cut(s) | 104 |
| Sau96I | GGNCC | 4 cut(s) | 8, 18, 124, 144 |
| SetI | ASST | 3 cut(s) | 33, 84, 100 |
| SgeI | CNNG | 7 cut(s) | 70, 85, 173, 175, 233, 263, 271 |
| SinI | GGWCC | 1 cut(s) | 18 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 42 |
| TaiI | ACGT | 1 cut(s) | 100 |
| TscAI | CASTG | 1 cut(s) | 28 |
| TseFI | GTSAC | 2 cut(s) | 98, 203 |
| TseI | GCWGC | 1 cut(s) | 170 |
| Tsp45I | GTSAC | 2 cut(s) | 98, 203 |
| TspDTI | ATGAA | 4 cut(s) | 60, 92, 152, 226 |
| TspRI | CASTG | 1 cut(s) | 28 |
| VpaK11BI | GGWCC | 1 cut(s) | 18 |