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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 131, 303 |
| AclWI | GGATC | 2 cut(s) | 103, 434 |
| AcoI | YGGCCR | 1 cut(s) | 533 |
| AcuI | CTGAAG | 3 cut(s) | 267, 325, 439 |
| AfaI | GTAC | 2 cut(s) | 58, 527 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 248, 423 |
| AflIII | ACRYGT | 1 cut(s) | 522 |
| AgsI | TTSAA | 1 cut(s) | 262 |
| AjnI | CCWGG | 4 cut(s) | 135, 404, 659, 667 |
| AluBI | AGCT | 4 cut(s) | 115, 245, 364, 470 |
| AluI | AGCT | 4 cut(s) | 115, 245, 364, 470 |
| Alw21I | GWGCWC | 1 cut(s) | 472 |
| Alw26I | GTCTC | 1 cut(s) | 506 |
| AlwI | GGATC | 2 cut(s) | 103, 434 |
| AoxI | GGCC | 1 cut(s) | 533 |
| ApeKI | GCWGC | 1 cut(s) | 315 |
| AspS9I | GGNCC | 1 cut(s) | 133 |
| AsuHPI | GGTGA | 2 cut(s) | 227, 292 |
| AvaII | GGWCC | 1 cut(s) | 133 |
| BalI | TGGCCA | 1 cut(s) | 535 |
| BanII | GRGCYC | 1 cut(s) | 472 |
| BbsI | GAAGAC | 2 cut(s) | 331, 650 |
| Bbv12I | GWGCWC | 1 cut(s) | 472 |
| BbvI | GCAGC | 1 cut(s) | 327 |
| BccI | CCATC | 3 cut(s) | 286, 553, 601 |
| BceAI | ACGGC | 3 cut(s) | 240, 401, 479 |
| BciT130I | CCWGG | 4 cut(s) | 137, 406, 661, 669 |
| BciVI | GTATCC | 1 cut(s) | 657 |
| BcoDI | GTCTC | 1 cut(s) | 506 |
| BfuI | GTATCC | 1 cut(s) | 657 |
| BisI | GCNGC | 1 cut(s) | 316 |
| BlsI | GCNGC | 1 cut(s) | 317 |
| Bme1390I | CCNGG | 4 cut(s) | 137, 406, 661, 669 |
| Bme18I | GGWCC | 1 cut(s) | 133 |
| BmgT120I | GGNCC | 1 cut(s) | 133 |
| BmiI | GGNNCC | 1 cut(s) | 635 |
| BmrFI | CCNGG | 4 cut(s) | 137, 406, 661, 669 |
| BmsI | GCATC | 2 cut(s) | 318, 599 |
| BpiI | GAAGAC | 2 cut(s) | 331, 650 |
| BpmI | CTGGAG | 1 cut(s) | 158 |
| BpuEI | CTTGAG | 1 cut(s) | 659 |
| BsaAI | YACGTR | 2 cut(s) | 432, 480 |
| BsaI | GGTCTC | 1 cut(s) | 506 |
| BsaJI | CCNNGG | 1 cut(s) | 648 |
| BsaWI | WCCGGW | 2 cut(s) | 28, 464 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 248, 423 |
| Bse118I | RCCGGY | 1 cut(s) | 385 |
| Bse1I | ACTGG | 2 cut(s) | 536, 635 |
| BseBI | CCWGG | 4 cut(s) | 137, 406, 661, 669 |
| BseDI | CCNNGG | 1 cut(s) | 648 |
| BseGI | GGATG | 2 cut(s) | 223, 614 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 248, 423 |
| BseMII | CTCAG | 1 cut(s) | 485 |
| BseNI | ACTGG | 2 cut(s) | 536, 635 |
| BseXI | GCAGC | 1 cut(s) | 327 |
| BshFI | GGCC | 1 cut(s) | 535 |
| BsiHKAI | GWGCWC | 1 cut(s) | 472 |
| BsiSI | CCGG | 3 cut(s) | 29, 386, 465 |
| BslFI | GGGAC | 1 cut(s) | 203 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 248, 423 |
| BsmAI | GTCTC | 1 cut(s) | 506 |
| BsmFI | GGGAC | 1 cut(s) | 203 |
| BsnI | GGCC | 1 cut(s) | 535 |
| Bso31I | GGTCTC | 1 cut(s) | 506 |
| Bsp1286I | GDGCHC | 1 cut(s) | 472 |
| Bsp1407I | TGTACA | 1 cut(s) | 525 |
| Bsp143I | GATC | 3 cut(s) | 75, 108, 426 |
| BspACI | CCGC | 2 cut(s) | 131, 303 |
| BspANI | GGCC | 1 cut(s) | 535 |
| BspCNI | CTCAG | 1 cut(s) | 484 |
| BspLI | GGNNCC | 1 cut(s) | 635 |
| BspPI | GGATC | 2 cut(s) | 103, 434 |
| BspTNI | GGTCTC | 1 cut(s) | 506 |
| BsrFI | RCCGGY | 1 cut(s) | 385 |
| BsrGI | TGTACA | 1 cut(s) | 525 |
| BsrI | ACTGG | 2 cut(s) | 536, 635 |
| BssAI | RCCGGY | 1 cut(s) | 385 |
| BssECI | CCNNGG | 1 cut(s) | 648 |
| BssMI | GATC | 3 cut(s) | 75, 108, 426 |
| BssT1I | CCWWGG | 1 cut(s) | 648 |
| Bst2UI | CCWGG | 4 cut(s) | 137, 406, 661, 669 |
| BstAUI | TGTACA | 1 cut(s) | 525 |
| BstBAI | YACGTR | 2 cut(s) | 432, 480 |
| BstC8I | GCNNGC | 1 cut(s) | 333 |
| BstDEI | CTNAG | 1 cut(s) | 471 |
| BstF5I | GGATG | 2 cut(s) | 223, 614 |
| BstKTI | GATC | 3 cut(s) | 78, 111, 429 |
| BstMAI | GTCTC | 1 cut(s) | 506 |
| BstMBI | GATC | 3 cut(s) | 75, 108, 426 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 121 |
| BstNI | CCWGG | 4 cut(s) | 137, 406, 661, 669 |
| BstNSI | RCATGY | 1 cut(s) | 526 |
| BstSCI | CCNGG | 4 cut(s) | 135, 404, 659, 667 |
| BstV1I | GCAGC | 1 cut(s) | 327 |
| BstV2I | GAAGAC | 2 cut(s) | 331, 650 |
| BstX2I | RGATCY | 1 cut(s) | 108 |
| BstYI | RGATCY | 1 cut(s) | 108 |
| BsuI | GTATCC | 1 cut(s) | 657 |
| BsuRI | GGCC | 1 cut(s) | 535 |
| BtgZI | GCGATG | 1 cut(s) | 305 |
| BtsCI | GGATG | 2 cut(s) | 223, 614 |
| Cac8I | GCNNGC | 1 cut(s) | 333 |
| Cfr10I | RCCGGY | 1 cut(s) | 385 |
| Cfr13I | GGNCC | 1 cut(s) | 133 |
| CseI | GACGC | 1 cut(s) | 17 |
| Csp6I | GTAC | 2 cut(s) | 57, 526 |
| CviAII | CATG | 2 cut(s) | 125, 523 |
| CviQI | GTAC | 2 cut(s) | 57, 526 |
| DdeI | CTNAG | 1 cut(s) | 471 |
| DpnI | GATC | 3 cut(s) | 77, 110, 428 |
| DpnII | GATC | 3 cut(s) | 75, 108, 426 |
| DraI | TTTAAA | 1 cut(s) | 324 |
| EaeI | YGGCCR | 1 cut(s) | 533 |
| Ecl136II | GAGCTC | 1 cut(s) | 470 |
| Eco130I | CCWWGG | 1 cut(s) | 648 |
| Eco24I | GRGCYC | 1 cut(s) | 472 |
| Eco31I | GGTCTC | 1 cut(s) | 506 |
| Eco47I | GGWCC | 1 cut(s) | 133 |
| Eco53kI | GAGCTC | 1 cut(s) | 470 |
| Eco57I | CTGAAG | 3 cut(s) | 267, 325, 439 |
| EcoICRI | GAGCTC | 1 cut(s) | 470 |
| EcoRII | CCWGG | 4 cut(s) | 135, 404, 659, 667 |
| EcoT14I | CCWWGG | 1 cut(s) | 648 |
| EcoT38I | GRGCYC | 1 cut(s) | 472 |
| ErhI | CCWWGG | 1 cut(s) | 648 |
| FaeI | CATG | 2 cut(s) | 128, 526 |
| FaiI | YATR | 9 cut(s) | 61, 126, 149, 200, 488, 499, 518, 524, 579 |
| FaqI | GGGAC | 1 cut(s) | 203 |
| FatI | CATG | 2 cut(s) | 124, 522 |
| Fnu4HI | GCNGC | 1 cut(s) | 316 |
| FokI | GGATG | 2 cut(s) | 230, 621 |
| FriOI | GRGCYC | 1 cut(s) | 472 |
| Fsp4HI | GCNGC | 1 cut(s) | 316 |
| GluI | GCNGC | 1 cut(s) | 316 |
| GsuI | CTGGAG | 1 cut(s) | 158 |
| HaeIII | GGCC | 1 cut(s) | 535 |
| HapII | CCGG | 3 cut(s) | 29, 386, 465 |
| HgaI | GACGC | 1 cut(s) | 17 |
| Hin1II | CATG | 2 cut(s) | 128, 526 |
| HincII | GTYRAC | 1 cut(s) | 7 |
| HindII | GTYRAC | 1 cut(s) | 7 |
| HinfI | GANTC | 4 cut(s) | 299, 356, 401, 544 |
| HpaII | CCGG | 3 cut(s) | 29, 386, 465 |
| HphI | GGTGA | 2 cut(s) | 227, 292 |
| Hpy166II | GTNNAC | 3 cut(s) | 7, 268, 503 |
| Hpy188I | TCNGA | 3 cut(s) | 344, 474, 549 |
| Hpy188III | TCNNGA | 2 cut(s) | 97, 556 |
| Hpy8I | GTNNAC | 3 cut(s) | 7, 268, 503 |
| HpyAV | CCTTC | 4 cut(s) | 242, 248, 557, 623 |
| HpyCH4IV | ACGT | 3 cut(s) | 192, 431, 479 |
| HpyCH4V | TGCA | 1 cut(s) | 331 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 121 |
| HpyF3I | CTNAG | 1 cut(s) | 471 |
| HpySE526I | ACGT | 3 cut(s) | 192, 431, 479 |
| Hsp92II | CATG | 2 cut(s) | 128, 526 |
| Kzo9I | GATC | 3 cut(s) | 75, 108, 426 |
| LmnI | GCTCC | 3 cut(s) | 120, 211, 467 |
| Lsp1109I | GCAGC | 1 cut(s) | 327 |
| LweI | GCATC | 2 cut(s) | 318, 599 |
| MaeII | ACGT | 3 cut(s) | 192, 431, 479 |
| MaeIII | GTNAC | 2 cut(s) | 220, 367 |
| MalI | GATC | 3 cut(s) | 77, 110, 428 |
| MboI | GATC | 3 cut(s) | 75, 108, 426 |
| MboII | GAAGA | 7 cut(s) | 308, 331, 421, 442, 445, 608, 655 |
| MflI | RGATCY | 1 cut(s) | 108 |
| MhlI | GDGCHC | 1 cut(s) | 472 |
| MlsI | TGGCCA | 1 cut(s) | 535 |
| MluCI | AATT | 1 cut(s) | 144 |
| MluNI | TGGCCA | 1 cut(s) | 535 |
| MnlI | CCTC | 3 cut(s) | 45, 144, 576 |
| Mox20I | TGGCCA | 1 cut(s) | 535 |
| MscI | TGGCCA | 1 cut(s) | 535 |
| MseI | TTAA | 2 cut(s) | 323, 422 |
| MslI | CAYNNNNRTG | 2 cut(s) | 123, 521 |
| Msp20I | TGGCCA | 1 cut(s) | 535 |
| MspA1I | CMGCKG | 1 cut(s) | 245 |
| MspI | CCGG | 3 cut(s) | 29, 386, 465 |
| MspR9I | CCNGG | 4 cut(s) | 137, 406, 661, 669 |
| MvaI | CCWGG | 4 cut(s) | 137, 406, 661, 669 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 121 |
| NdeII | GATC | 3 cut(s) | 75, 108, 426 |
| NlaIII | CATG | 2 cut(s) | 128, 526 |
| NlaIV | GGNNCC | 1 cut(s) | 635 |
| NmuCI | GTSAC | 1 cut(s) | 220 |
| NspI | RCATGY | 1 cut(s) | 526 |
| PciI | ACATGT | 1 cut(s) | 522 |
| PfeI | GAWTC | 4 cut(s) | 299, 356, 401, 544 |
| PfoI | TCCNGGA | 1 cut(s) | 404 |
| PkrI | GCNGC | 1 cut(s) | 317 |
| Ppu21I | YACGTR | 2 cut(s) | 432, 480 |
| PscI | ACATGT | 1 cut(s) | 522 |
| Psp124BI | GAGCTC | 1 cut(s) | 472 |
| Psp6I | CCWGG | 4 cut(s) | 135, 404, 659, 667 |
| PspGI | CCWGG | 4 cut(s) | 135, 404, 659, 667 |
| PspN4I | GGNNCC | 1 cut(s) | 635 |
| PspPI | GGNCC | 1 cut(s) | 133 |
| PsuI | RGATCY | 1 cut(s) | 108 |
| PvuII | CAGCTG | 1 cut(s) | 245 |
| RsaI | GTAC | 2 cut(s) | 58, 527 |
| RsaNI | GTAC | 2 cut(s) | 57, 526 |
| RseI | CAYNNNNRTG | 2 cut(s) | 123, 521 |
| SacI | GAGCTC | 1 cut(s) | 472 |
| SaqAI | TTAA | 2 cut(s) | 323, 422 |
| SatI | GCNGC | 1 cut(s) | 316 |
| Sau3AI | GATC | 3 cut(s) | 75, 108, 426 |
| Sau96I | GGNCC | 1 cut(s) | 133 |
| ScrFI | CCNGG | 4 cut(s) | 137, 406, 661, 669 |
| SduI | GDGCHC | 1 cut(s) | 472 |
| SfaNI | GCATC | 2 cut(s) | 318, 599 |
| SinI | GGWCC | 1 cut(s) | 133 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 123, 521 |
| SmlI | CTYRAG | 1 cut(s) | 638 |
| SmoI | CTYRAG | 1 cut(s) | 638 |
| Sse9I | AATT | 1 cut(s) | 144 |
| SsiI | CCGC | 2 cut(s) | 131, 303 |
| SspI | AATATT | 1 cut(s) | 309 |
| SstI | GAGCTC | 1 cut(s) | 472 |
| StyD4I | CCNGG | 4 cut(s) | 135, 404, 659, 667 |
| StyI | CCWWGG | 1 cut(s) | 648 |
| TaiI | ACGT | 3 cut(s) | 195, 434, 482 |
| TaqI | TCGA | 4 cut(s) | 78, 159, 359, 460 |
| TasI | AATT | 1 cut(s) | 144 |
| TatI | WGTACW | 1 cut(s) | 525 |
| TfiI | GAWTC | 4 cut(s) | 299, 356, 401, 544 |
| Tru1I | TTAA | 2 cut(s) | 323, 422 |
| Tru9I | TTAA | 2 cut(s) | 323, 422 |
| TseFI | GTSAC | 1 cut(s) | 220 |
| TseI | GCWGC | 1 cut(s) | 315 |
| Tsp45I | GTSAC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 3 cut(s) | 141, 219, 617 |
| TspGWI | ACGGA | 2 cut(s) | 224, 520 |
| VpaK11BI | GGWCC | 1 cut(s) | 133 |
| XceI | RCATGY | 1 cut(s) | 526 |