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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 884 |
| AccI | GTMKAC | 1 cut(s) | 785 |
| AciI | CCGC | 2 cut(s) | 229, 250 |
| AclI | AACGTT | 2 cut(s) | 240, 261 |
| AcuI | CTGAAG | 2 cut(s) | 669, 716 |
| AcyI | GRCGYC | 1 cut(s) | 271 |
| AdeI | CACNNNGTG | 1 cut(s) | 130 |
| AfaI | GTAC | 4 cut(s) | 19, 31, 66, 1050 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 433, 439, 583, 1031 |
| AflIII | ACRYGT | 1 cut(s) | 937 |
| AgsI | TTSAA | 4 cut(s) | 238, 259, 503, 1019 |
| AjnI | CCWGG | 1 cut(s) | 432 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 533, 565, 689, 721 |
| AluBI | AGCT | 3 cut(s) | 299, 692, 1007 |
| AluI | AGCT | 3 cut(s) | 299, 692, 1007 |
| Alw26I | GTCTC | 3 cut(s) | 45, 63, 437 |
| ApeKI | GCWGC | 4 cut(s) | 4, 751, 869, 1004 |
| AspLEI | GCGC | 1 cut(s) | 9 |
| AspS9I | GGNCC | 1 cut(s) | 1057 |
| AsuHPI | GGTGA | 2 cut(s) | 508, 524 |
| AvaII | GGWCC | 1 cut(s) | 1057 |
| AxyI | CCTNAGG | 1 cut(s) | 1026 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 924, 957 |
| BbvI | GCAGC | 3 cut(s) | 763, 881, 1016 |
| BccI | CCATC | 4 cut(s) | 608, 766, 952, 1060 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1035, 1069 |
| BciT130I | CCWGG | 1 cut(s) | 434 |
| BciVI | GTATCC | 1 cut(s) | 925 |
| BcoDI | GTCTC | 3 cut(s) | 45, 63, 437 |
| BfaI | CTAG | 2 cut(s) | 215, 303 |
| BfmI | CTRYAG | 1 cut(s) | 767 |
| BfuI | GTATCC | 1 cut(s) | 925 |
| BisI | GCNGC | 6 cut(s) | 5, 230, 251, 752, 870, 1005 |
| BlsI | GCNGC | 6 cut(s) | 6, 231, 252, 753, 871, 1006 |
| Bme1390I | CCNGG | 1 cut(s) | 434 |
| Bme18I | GGWCC | 1 cut(s) | 1057 |
| BmgT120I | GGNCC | 1 cut(s) | 1057 |
| BmiI | GGNNCC | 2 cut(s) | 728, 1059 |
| BmrFI | CCNGG | 1 cut(s) | 434 |
| BmsI | GCATC | 1 cut(s) | 645 |
| BpmI | CTGGAG | 1 cut(s) | 64 |
| BsaAI | YACGTR | 1 cut(s) | 33 |
| BsaHI | GRCGYC | 1 cut(s) | 271 |
| BsaI | GGTCTC | 1 cut(s) | 437 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 42, 72 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 433, 439, 583, 1031 |
| Bse1I | ACTGG | 2 cut(s) | 848, 1002 |
| Bse21I | CCTNAGG | 1 cut(s) | 1026 |
| BseBI | CCWGG | 1 cut(s) | 434 |
| BseGI | GGATG | 1 cut(s) | 373 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 433, 439, 583, 1031 |
| BseMII | CTCAG | 2 cut(s) | 804, 1017 |
| BseNI | ACTGG | 2 cut(s) | 848, 1002 |
| BseRI | GAGGAG | 2 cut(s) | 455, 545 |
| BseXI | GCAGC | 3 cut(s) | 763, 881, 1016 |
| BseYI | CCCAGC | 1 cut(s) | 181 |
| BsgI | GTGCAG | 2 cut(s) | 122, 422 |
| Bsh1285I | CGRYCG | 1 cut(s) | 789 |
| BsiEI | CGRYCG | 1 cut(s) | 789 |
| BsiSI | CCGG | 3 cut(s) | 226, 247, 268 |
| BsiWI | CGTACG | 1 cut(s) | 29 |
| BslFI | GGGAC | 2 cut(s) | 135, 1043 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 433, 439, 583, 1031 |
| BsmAI | GTCTC | 3 cut(s) | 45, 63, 437 |
| BsmFI | GGGAC | 2 cut(s) | 135, 1043 |
| Bso31I | GGTCTC | 1 cut(s) | 437 |
| Bsp143I | GATC | 3 cut(s) | 668, 796, 976 |
| BspACI | CCGC | 2 cut(s) | 229, 250 |
| BspCNI | CTCAG | 2 cut(s) | 805, 1018 |
| BspLI | GGNNCC | 2 cut(s) | 728, 1059 |
| BspTNI | GGTCTC | 1 cut(s) | 437 |
| BsrI | ACTGG | 2 cut(s) | 848, 1002 |
| BssMI | GATC | 3 cut(s) | 668, 796, 976 |
| BssNI | GRCGYC | 1 cut(s) | 271 |
| Bst2UI | CCWGG | 1 cut(s) | 434 |
| Bst4CI | ACNGT | 3 cut(s) | 607, 1015, 1078 |
| Bst6I | CTCTTC | 2 cut(s) | 357, 432 |
| BstACI | GRCGYC | 1 cut(s) | 271 |
| BstBAI | YACGTR | 1 cut(s) | 33 |
| BstC8I | GCNNGC | 3 cut(s) | 40, 187, 424 |
| BstDEI | CTNAG | 4 cut(s) | 813, 863, 1008, 1026 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1029 |
| BstF5I | GGATG | 1 cut(s) | 373 |
| BstHHI | GCGC | 1 cut(s) | 9 |
| BstKTI | GATC | 3 cut(s) | 671, 799, 979 |
| BstMAI | GTCTC | 3 cut(s) | 45, 63, 437 |
| BstMBI | GATC | 3 cut(s) | 668, 796, 976 |
| BstMCI | CGRYCG | 1 cut(s) | 789 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 13, 182 |
| BstNI | CCWGG | 1 cut(s) | 434 |
| BstNSI | RCATGY | 2 cut(s) | 941, 1087 |
| BstSCI | CCNGG | 1 cut(s) | 432 |
| BstSFI | CTRYAG | 1 cut(s) | 767 |
| BstV1I | GCAGC | 3 cut(s) | 763, 881, 1016 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1026 |
| BsuI | GTATCC | 1 cut(s) | 925 |
| BtsCI | GGATG | 1 cut(s) | 373 |
| BtsI | GCAGTG | 1 cut(s) | 751 |
| BtsIMutI | CAGTG | 1 cut(s) | 751 |
| Cac8I | GCNNGC | 3 cut(s) | 40, 187, 424 |
| CfoI | GCGC | 1 cut(s) | 9 |
| Cfr13I | GGNCC | 1 cut(s) | 1057 |
| CseI | GACGC | 1 cut(s) | 260 |
| Csp6I | GTAC | 4 cut(s) | 18, 30, 65, 1049 |
| CviAII | CATG | 4 cut(s) | 100, 466, 938, 1084 |
| CviJI | RGCY | 7 cut(s) | 38, 42, 232, 299, 426, 692, 1007 |
| CviKI_1 | RGCY | 7 cut(s) | 38, 42, 232, 299, 426, 692, 1007 |
| CviQI | GTAC | 4 cut(s) | 18, 30, 65, 1049 |
| DdeI | CTNAG | 4 cut(s) | 813, 863, 1008, 1026 |
| DpnI | GATC | 3 cut(s) | 670, 798, 978 |
| DpnII | GATC | 3 cut(s) | 668, 796, 976 |
| DraIII | CACNNNGTG | 1 cut(s) | 130 |
| Eam1104I | CTCTTC | 2 cut(s) | 357, 432 |
| EarI | CTCTTC | 2 cut(s) | 357, 432 |
| Eco31I | GGTCTC | 1 cut(s) | 437 |
| Eco47I | GGWCC | 1 cut(s) | 1057 |
| Eco57I | CTGAAG | 2 cut(s) | 669, 716 |
| Eco81I | CCTNAGG | 1 cut(s) | 1026 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1029 |
| EcoRII | CCWGG | 1 cut(s) | 432 |
| EcoT22I | ATGCAT | 1 cut(s) | 1089 |
| FaeI | CATG | 4 cut(s) | 103, 469, 941, 1087 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 533, 565 |
| FaqI | GGGAC | 2 cut(s) | 135, 1043 |
| FatI | CATG | 4 cut(s) | 99, 465, 937, 1083 |
| FblI | GTMKAC | 1 cut(s) | 785 |
| Fnu4HI | GCNGC | 6 cut(s) | 5, 230, 251, 752, 870, 1005 |
| FokI | GGATG | 1 cut(s) | 380 |
| Fsp4HI | GCNGC | 6 cut(s) | 5, 230, 251, 752, 870, 1005 |
| FspBI | CTAG | 2 cut(s) | 215, 303 |
| GlaI | GCGC | 1 cut(s) | 8 |
| GluI | GCNGC | 6 cut(s) | 5, 230, 251, 752, 870, 1005 |
| GsaI | CCCAGC | 1 cut(s) | 185 |
| GsuI | CTGGAG | 1 cut(s) | 64 |
| HapII | CCGG | 3 cut(s) | 226, 247, 268 |
| HgaI | GACGC | 1 cut(s) | 260 |
| HhaI | GCGC | 1 cut(s) | 9 |
| Hin1I | GRCGYC | 1 cut(s) | 271 |
| Hin1II | CATG | 4 cut(s) | 103, 469, 941, 1087 |
| Hin6I | GCGC | 1 cut(s) | 7 |
| HinP1I | GCGC | 1 cut(s) | 7 |
| HincII | GTYRAC | 2 cut(s) | 786, 1081 |
| HindII | GTYRAC | 2 cut(s) | 786, 1081 |
| HindIII | AAGCTT | 1 cut(s) | 297 |
| HinfI | GANTC | 4 cut(s) | 255, 809, 907, 962 |
| HpaII | CCGG | 3 cut(s) | 226, 247, 268 |
| HphI | GGTGA | 2 cut(s) | 508, 524 |
| Hpy166II | GTNNAC | 3 cut(s) | 786, 943, 1081 |
| Hpy188I | TCNGA | 3 cut(s) | 696, 814, 967 |
| Hpy188III | TCNNGA | 2 cut(s) | 215, 911 |
| Hpy8I | GTNNAC | 3 cut(s) | 786, 943, 1081 |
| Hpy99I | CGWCG | 1 cut(s) | 164 |
| HpyAV | CCTTC | 2 cut(s) | 323, 557 |
| HpyCH4III | ACNGT | 3 cut(s) | 607, 1015, 1078 |
| HpyCH4IV | ACGT | 3 cut(s) | 32, 240, 261 |
| HpyCH4V | TGCA | 7 cut(s) | 23, 139, 403, 572, 658, 827, 1087 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 13, 182 |
| HpyF3I | CTNAG | 4 cut(s) | 813, 863, 1008, 1026 |
| HpySE526I | ACGT | 3 cut(s) | 32, 240, 261 |
| Hsp92I | GRCGYC | 1 cut(s) | 271 |
| Hsp92II | CATG | 4 cut(s) | 103, 469, 941, 1087 |
| HspAI | GCGC | 1 cut(s) | 7 |
| Kzo9I | GATC | 3 cut(s) | 668, 796, 976 |
| LmnI | GCTCC | 1 cut(s) | 532 |
| Lsp1109I | GCAGC | 3 cut(s) | 763, 881, 1016 |
| LweI | GCATC | 1 cut(s) | 645 |
| MaeI | CTAG | 2 cut(s) | 215, 303 |
| MaeII | ACGT | 3 cut(s) | 32, 240, 261 |
| MaeIII | GTNAC | 3 cut(s) | 461, 601, 715 |
| MalI | GATC | 3 cut(s) | 670, 798, 978 |
| MboI | GATC | 3 cut(s) | 668, 796, 976 |
| MluCI | AATT | 3 cut(s) | 621, 701, 879 |
| MlyI | GAGTC | 1 cut(s) | 916 |
| MnlI | CCTC | 8 cut(s) | 337, 358, 433, 523, 798, 810, 922, 1021 |
| Mph1103I | ATGCAT | 1 cut(s) | 1089 |
| MseI | TTAA | 2 cut(s) | 144, 1090 |
| MspI | CCGG | 3 cut(s) | 226, 247, 268 |
| MspR9I | CCNGG | 1 cut(s) | 434 |
| MvaI | CCWGG | 1 cut(s) | 434 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 13, 182 |
| NdeII | GATC | 3 cut(s) | 668, 796, 976 |
| NlaIII | CATG | 4 cut(s) | 103, 469, 941, 1087 |
| NlaIV | GGNNCC | 2 cut(s) | 728, 1059 |
| NsiI | ATGCAT | 1 cut(s) | 1089 |
| NspI | RCATGY | 2 cut(s) | 941, 1087 |
| PciI | ACATGT | 1 cut(s) | 937 |
| PfeI | GAWTC | 3 cut(s) | 255, 809, 962 |
| Pfl23II | CGTACG | 1 cut(s) | 29 |
| PflFI | GACNNNGTC | 1 cut(s) | 56 |
| PkrI | GCNGC | 6 cut(s) | 6, 231, 252, 753, 871, 1006 |
| PleI | GAGTC | 1 cut(s) | 915 |
| PpsI | GAGTC | 1 cut(s) | 915 |
| Ppu21I | YACGTR | 1 cut(s) | 33 |
| PscI | ACATGT | 1 cut(s) | 937 |
| PsiI | TTATAA | 1 cut(s) | 884 |
| Psp1406I | AACGTT | 2 cut(s) | 240, 261 |
| Psp6I | CCWGG | 1 cut(s) | 432 |
| PspFI | CCCAGC | 1 cut(s) | 181 |
| PspGI | CCWGG | 1 cut(s) | 432 |
| PspLI | CGTACG | 1 cut(s) | 29 |
| PspN4I | GGNNCC | 2 cut(s) | 728, 1059 |
| PspPI | GGNCC | 1 cut(s) | 1057 |
| PsyI | GACNNNGTC | 1 cut(s) | 56 |
| RsaI | GTAC | 4 cut(s) | 19, 31, 66, 1050 |
| RsaNI | GTAC | 4 cut(s) | 18, 30, 65, 1049 |
| SalI | GTCGAC | 1 cut(s) | 784 |
| SaqAI | TTAA | 2 cut(s) | 144, 1090 |
| SatI | GCNGC | 6 cut(s) | 5, 230, 251, 752, 870, 1005 |
| Sau3AI | GATC | 3 cut(s) | 668, 796, 976 |
| Sau96I | GGNCC | 1 cut(s) | 1057 |
| SchI | GAGTC | 1 cut(s) | 916 |
| ScrFI | CCNGG | 1 cut(s) | 434 |
| SfaNI | GCATC | 1 cut(s) | 645 |
| SfcI | CTRYAG | 1 cut(s) | 767 |
| SinI | GGWCC | 1 cut(s) | 1057 |
| Sse9I | AATT | 3 cut(s) | 621, 701, 879 |
| SsiI | CCGC | 2 cut(s) | 229, 250 |
| SspMI | CTAG | 2 cut(s) | 215, 303 |
| StyD4I | CCNGG | 1 cut(s) | 432 |
| TaaI | ACNGT | 3 cut(s) | 607, 1015, 1078 |
| TaiI | ACGT | 3 cut(s) | 35, 243, 264 |
| TaqI | TCGA | 3 cut(s) | 785, 841, 989 |
| TaqII | GACCGA | 2 cut(s) | 803, 1045 |
| TasI | AATT | 3 cut(s) | 621, 701, 879 |
| TauI | GCSGC | 2 cut(s) | 232, 253 |
| TfiI | GAWTC | 3 cut(s) | 255, 809, 962 |
| Tru1I | TTAA | 2 cut(s) | 144, 1090 |
| Tru9I | TTAA | 2 cut(s) | 144, 1090 |
| TscAI | CASTG | 1 cut(s) | 751 |
| TseI | GCWGC | 4 cut(s) | 4, 751, 869, 1004 |
| TspDTI | ATGAA | 4 cut(s) | 482, 554, 576, 870 |
| TspRI | CASTG | 1 cut(s) | 751 |
| Tth111I | GACNNNGTC | 1 cut(s) | 56 |
| VpaK11BI | GGWCC | 1 cut(s) | 1057 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1029 |
| XbaI | TCTAGA | 1 cut(s) | 214 |
| XceI | RCATGY | 2 cut(s) | 941, 1087 |
| XmiI | GTMKAC | 1 cut(s) | 785 |
| XspI | CTAG | 2 cut(s) | 215, 303 |
| Zsp2I | ATGCAT | 1 cut(s) | 1089 |