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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 363 |
| AclWI | GGATC | 1 cut(s) | 503 |
| AcuI | CTGAAG | 1 cut(s) | 380 |
| AcyI | GRCGYC | 1 cut(s) | 410 |
| AfaI | GTAC | 1 cut(s) | 797 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 211, 503 |
| AgsI | TTSAA | 8 cut(s) | 131, 464, 538, 788, 809, 859, 871, 887 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 317, 349 |
| AluBI | AGCT | 3 cut(s) | 320, 386, 635 |
| AluI | AGCT | 3 cut(s) | 320, 386, 635 |
| Alw21I | GWGCWC | 1 cut(s) | 322 |
| Alw26I | GTCTC | 1 cut(s) | 619 |
| AlwI | GGATC | 1 cut(s) | 503 |
| AoxI | GGCC | 1 cut(s) | 874 |
| ApeKI | GCWGC | 1 cut(s) | 632 |
| AspLEI | GCGC | 1 cut(s) | 301 |
| AsuHPI | GGTGA | 4 cut(s) | 22, 152, 518, 724 |
| BanII | GRGCYC | 1 cut(s) | 322 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 540, 572 |
| BbsI | GAAGAC | 2 cut(s) | 176, 767 |
| Bbv12I | GWGCWC | 1 cut(s) | 322 |
| BbvI | GCAGC | 1 cut(s) | 644 |
| BccI | CCATC | 2 cut(s) | 394, 422 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 621, 655 |
| BclI | TGATCA | 2 cut(s) | 376, 714 |
| BcoDI | GTCTC | 1 cut(s) | 619 |
| BfaI | CTAG | 1 cut(s) | 87 |
| BfmI | CTRYAG | 1 cut(s) | 585 |
| BisI | GCNGC | 1 cut(s) | 633 |
| BlsI | GCNGC | 1 cut(s) | 634 |
| BmiI | GGNNCC | 1 cut(s) | 42 |
| BmrI | ACTGGG | 1 cut(s) | 46 |
| BmsI | GCATC | 2 cut(s) | 273, 580 |
| BmuI | ACTGGG | 1 cut(s) | 46 |
| BpiI | GAAGAC | 2 cut(s) | 176, 767 |
| BsaHI | GRCGYC | 1 cut(s) | 410 |
| BsaJI | CCNNGG | 1 cut(s) | 497 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 211, 503 |
| Bse1I | ACTGG | 4 cut(s) | 41, 482, 512, 783 |
| BseDI | CCNNGG | 1 cut(s) | 497 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 211, 503 |
| BseMII | CTCAG | 1 cut(s) | 779 |
| BseNI | ACTGG | 4 cut(s) | 41, 482, 512, 783 |
| BseRI | GAGGAG | 3 cut(s) | 23, 581, 584 |
| BseXI | GCAGC | 1 cut(s) | 644 |
| BshFI | GGCC | 1 cut(s) | 876 |
| BsiHKAI | GWGCWC | 1 cut(s) | 322 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 211, 503 |
| BsmAI | GTCTC | 1 cut(s) | 619 |
| BsnI | GGCC | 1 cut(s) | 876 |
| Bsp1286I | GDGCHC | 1 cut(s) | 322 |
| Bsp143I | GATC | 4 cut(s) | 376, 508, 714, 892 |
| BspANI | GGCC | 1 cut(s) | 876 |
| BspCNI | CTCAG | 1 cut(s) | 778 |
| BspLI | GGNNCC | 1 cut(s) | 42 |
| BspPI | GGATC | 1 cut(s) | 503 |
| BsrI | ACTGG | 4 cut(s) | 41, 482, 512, 783 |
| BssECI | CCNNGG | 1 cut(s) | 497 |
| BssMI | GATC | 4 cut(s) | 376, 508, 714, 892 |
| BssNI | GRCGYC | 1 cut(s) | 410 |
| BssT1I | CCWWGG | 1 cut(s) | 497 |
| Bst4CI | ACNGT | 2 cut(s) | 124, 523 |
| Bst6I | CTCTTC | 4 cut(s) | 54, 63, 153, 543 |
| BstACI | GRCGYC | 1 cut(s) | 410 |
| BstC8I | GCNNGC | 1 cut(s) | 408 |
| BstDEI | CTNAG | 1 cut(s) | 765 |
| BstHHI | GCGC | 1 cut(s) | 301 |
| BstKTI | GATC | 4 cut(s) | 379, 511, 717, 895 |
| BstMAI | GTCTC | 1 cut(s) | 619 |
| BstMBI | GATC | 4 cut(s) | 376, 508, 714, 892 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 590, 641, 650 |
| BstSFI | CTRYAG | 1 cut(s) | 585 |
| BstV1I | GCAGC | 1 cut(s) | 644 |
| BstV2I | GAAGAC | 2 cut(s) | 176, 767 |
| BsuRI | GGCC | 1 cut(s) | 876 |
| BtsIMutI | CAGTG | 2 cut(s) | 129, 726 |
| Cac8I | GCNNGC | 1 cut(s) | 408 |
| CfoI | GCGC | 1 cut(s) | 301 |
| CseI | GACGC | 1 cut(s) | 399 |
| Csp6I | GTAC | 1 cut(s) | 796 |
| CviAII | CATG | 4 cut(s) | 94, 694, 812, 878 |
| CviJI | RGCY | 7 cut(s) | 320, 386, 456, 635, 722, 852, 876 |
| CviKI_1 | RGCY | 7 cut(s) | 320, 386, 456, 635, 722, 852, 876 |
| CviQI | GTAC | 1 cut(s) | 796 |
| DdeI | CTNAG | 1 cut(s) | 765 |
| DpnI | GATC | 4 cut(s) | 378, 510, 716, 894 |
| DpnII | GATC | 4 cut(s) | 376, 508, 714, 892 |
| Eam1104I | CTCTTC | 4 cut(s) | 54, 63, 153, 543 |
| EarI | CTCTTC | 4 cut(s) | 54, 63, 153, 543 |
| Ecl136II | GAGCTC | 1 cut(s) | 320 |
| Eco130I | CCWWGG | 1 cut(s) | 497 |
| Eco24I | GRGCYC | 1 cut(s) | 322 |
| Eco53kI | GAGCTC | 1 cut(s) | 320 |
| Eco57I | CTGAAG | 1 cut(s) | 380 |
| EcoICRI | GAGCTC | 1 cut(s) | 320 |
| EcoT14I | CCWWGG | 1 cut(s) | 497 |
| EcoT38I | GRGCYC | 1 cut(s) | 322 |
| ErhI | CCWWGG | 1 cut(s) | 497 |
| FaeI | CATG | 4 cut(s) | 97, 697, 815, 881 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FatI | CATG | 4 cut(s) | 93, 693, 811, 877 |
| FbaI | TGATCA | 2 cut(s) | 376, 714 |
| Fnu4HI | GCNGC | 1 cut(s) | 633 |
| FriOI | GRGCYC | 1 cut(s) | 322 |
| Fsp4HI | GCNGC | 1 cut(s) | 633 |
| FspBI | CTAG | 1 cut(s) | 87 |
| GlaI | GCGC | 1 cut(s) | 300 |
| GluI | GCNGC | 1 cut(s) | 633 |
| HaeIII | GGCC | 1 cut(s) | 876 |
| HgaI | GACGC | 1 cut(s) | 399 |
| HhaI | GCGC | 1 cut(s) | 301 |
| Hin1I | GRCGYC | 1 cut(s) | 410 |
| Hin1II | CATG | 4 cut(s) | 97, 697, 815, 881 |
| Hin6I | GCGC | 1 cut(s) | 299 |
| HinP1I | GCGC | 1 cut(s) | 299 |
| HincII | GTYRAC | 3 cut(s) | 414, 487, 517 |
| HindII | GTYRAC | 3 cut(s) | 414, 487, 517 |
| HinfI | GANTC | 2 cut(s) | 52, 763 |
| HpaI | GTTAAC | 1 cut(s) | 517 |
| HphI | GGTGA | 4 cut(s) | 22, 152, 518, 724 |
| Hpy166II | GTNNAC | 3 cut(s) | 414, 487, 517 |
| Hpy188I | TCNGA | 6 cut(s) | 317, 324, 381, 399, 547, 768 |
| Hpy188III | TCNNGA | 5 cut(s) | 56, 538, 616, 626, 835 |
| Hpy8I | GTNNAC | 3 cut(s) | 414, 487, 517 |
| HpyAV | CCTTC | 3 cut(s) | 131, 697, 836 |
| HpyCH4III | ACNGT | 2 cut(s) | 124, 523 |
| HpyCH4IV | ACGT | 1 cut(s) | 794 |
| HpyCH4V | TGCA | 2 cut(s) | 286, 593 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 590, 641, 650 |
| HpyF3I | CTNAG | 1 cut(s) | 765 |
| HpySE526I | ACGT | 1 cut(s) | 794 |
| Hsp92I | GRCGYC | 1 cut(s) | 410 |
| Hsp92II | CATG | 4 cut(s) | 97, 697, 815, 881 |
| HspAI | GCGC | 1 cut(s) | 299 |
| Ksp22I | TGATCA | 2 cut(s) | 376, 714 |
| KspAI | GTTAAC | 1 cut(s) | 517 |
| Kzo9I | GATC | 4 cut(s) | 376, 508, 714, 892 |
| LmnI | GCTCC | 2 cut(s) | 10, 418 |
| LpnPI | CCDG | 8 cut(s) | 22, 41, 392, 420, 495, 525, 672, 764 |
| Lsp1109I | GCAGC | 1 cut(s) | 644 |
| LweI | GCATC | 2 cut(s) | 273, 580 |
| MaeI | CTAG | 1 cut(s) | 87 |
| MaeII | ACGT | 1 cut(s) | 794 |
| MaeIII | GTNAC | 3 cut(s) | 82, 140, 271 |
| MalI | GATC | 4 cut(s) | 378, 510, 716, 894 |
| MboI | GATC | 4 cut(s) | 376, 508, 714, 892 |
| MhlI | GDGCHC | 1 cut(s) | 322 |
| MluCI | AATT | 4 cut(s) | 329, 609, 621, 637 |
| MlyI | GAGTC | 1 cut(s) | 757 |
| MnlI | CCTC | 6 cut(s) | 483, 497, 537, 544, 559, 562 |
| MseI | TTAA | 2 cut(s) | 210, 516 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 590, 641, 650 |
| NdeII | GATC | 4 cut(s) | 376, 508, 714, 892 |
| NlaIII | CATG | 4 cut(s) | 97, 697, 815, 881 |
| NlaIV | GGNNCC | 1 cut(s) | 42 |
| NmuCI | GTSAC | 2 cut(s) | 140, 271 |
| PfeI | GAWTC | 1 cut(s) | 52 |
| PkrI | GCNGC | 1 cut(s) | 634 |
| PleI | GAGTC | 1 cut(s) | 757 |
| PpsI | GAGTC | 1 cut(s) | 757 |
| PsiI | TTATAA | 1 cut(s) | 363 |
| Psp124BI | GAGCTC | 1 cut(s) | 322 |
| PspN4I | GGNNCC | 1 cut(s) | 42 |
| RsaI | GTAC | 1 cut(s) | 797 |
| RsaNI | GTAC | 1 cut(s) | 796 |
| SacI | GAGCTC | 1 cut(s) | 322 |
| SaqAI | TTAA | 2 cut(s) | 210, 516 |
| SatI | GCNGC | 1 cut(s) | 633 |
| Sau3AI | GATC | 4 cut(s) | 376, 508, 714, 892 |
| SchI | GAGTC | 1 cut(s) | 757 |
| SduI | GDGCHC | 1 cut(s) | 322 |
| SfaNI | GCATC | 2 cut(s) | 273, 580 |
| SfcI | CTRYAG | 1 cut(s) | 585 |
| Sse9I | AATT | 4 cut(s) | 329, 609, 621, 637 |
| SspI | AATATT | 1 cut(s) | 735 |
| SspMI | CTAG | 1 cut(s) | 87 |
| SstI | GAGCTC | 1 cut(s) | 322 |
| StyI | CCWWGG | 1 cut(s) | 497 |
| TaaI | ACNGT | 2 cut(s) | 124, 523 |
| TaiI | ACGT | 1 cut(s) | 797 |
| TaqI | TCGA | 3 cut(s) | 617, 627, 834 |
| TasI | AATT | 4 cut(s) | 329, 609, 621, 637 |
| TfiI | GAWTC | 1 cut(s) | 52 |
| Tru1I | TTAA | 2 cut(s) | 210, 516 |
| Tru9I | TTAA | 2 cut(s) | 210, 516 |
| TscAI | CASTG | 2 cut(s) | 129, 733 |
| TseFI | GTSAC | 2 cut(s) | 140, 271 |
| TseI | GCWGC | 1 cut(s) | 632 |
| Tsp45I | GTSAC | 2 cut(s) | 140, 271 |
| TspDTI | ATGAA | 8 cut(s) | 131, 150, 182, 204, 456, 710, 759, 828 |
| TspGWI | ACGGA | 1 cut(s) | 431 |
| TspRI | CASTG | 2 cut(s) | 129, 733 |
| XspI | CTAG | 1 cut(s) | 87 |