Rroxscaffold_2G00123940

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
57900298 .. 57903294
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123940.1

Sequence Viewer

Length: 363 bp
ATGTCCCCCAAGTCCCCGGTCAAGGAGGGCAATCTTGGTTGGGGAGTTGCCTATTGGTTTGAAGCGTTGCTTCCGCTAGACTTGCAAAAGGATAATCGGCGTCCGTGCATTGTCAACCATGGGCTTATTGAGCAAACGCTTTATACCTTTTCGGGTGGGCCCTTGCTAGTCCCCTCATGTTCGACCGGTCATAGTCCAAATGGAGCTTCGGCGGCCGAGGGTCCGCCCCATGAGAAAGCCGTGGAGAGGCCCGCCGGAGCGCGTCATATGACACAAAAGGAACCGCATGAGTTTGGAACCGCAATGGCGGGGGAATCCCGGCGATGGCAAGATCGTTACCATAACGGGTTTGGAACCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.09

Weight (kDa)

7.01

Isoelectric Point (pI)

63.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 262
AciI CCGC 8 cut(s) 74, 212, 224, 252, 284, 300, 308, 357
AcoI YGGCCR 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 100
AfiI CCNNNNNNNGG 3 cut(s) 22, 246, 324
AgeI ACCGGT 1 cut(s) 185
AgsI TTSAA 1 cut(s) 62
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
AoxI GGCC 3 cut(s) 158, 213, 248
ApaI GGGCCC 1 cut(s) 162
AsiGI ACCGGT 1 cut(s) 185
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 4 cut(s) 158, 159, 221, 249
AsuC2I CCSGG 2 cut(s) 17, 319
AvaII GGWCC 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 162
BccI CCATC 1 cut(s) 318
BceAI ACGGC 1 cut(s) 224
BcnI CCSGG 2 cut(s) 17, 319
BfaI CTAG 2 cut(s) 77, 167
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 17, 319
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 4 cut(s) 158, 159, 221, 249
BmiI GGNNCC 5 cut(s) 160, 222, 282, 298, 355
BmrFI CCNGG 2 cut(s) 17, 319
BpuMI CCSGG 2 cut(s) 17, 319
BsaHI GRCGYC 1 cut(s) 100
BsaJI CCNNGG 4 cut(s) 15, 118, 216, 240
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 246, 324
Bse118I RCCGGY 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 4 cut(s) 15, 118, 216, 240
BseLI CCNNNNNNNGG 3 cut(s) 22, 246, 324
BseMI GCAATG 1 cut(s) 309
BseSI GKGCMC 1 cut(s) 162
BseX3I CGGCCG 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 262
Bsh1285I CGRYCG 2 cut(s) 186, 216
BshFI GGCC 3 cut(s) 160, 215, 250
BshTI ACCGGT 1 cut(s) 185
BsiEI CGRYCG 2 cut(s) 186, 216
BsiSI CCGG 4 cut(s) 17, 186, 255, 319
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 22, 246, 324
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 3 cut(s) 160, 215, 250
Bsp120I GGGCCC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 331
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 8 cut(s) 74, 212, 224, 252, 284, 300, 308, 357
BspANI GGCC 3 cut(s) 160, 215, 250
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 5 cut(s) 160, 222, 282, 298, 355
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 4 cut(s) 15, 118, 216, 240
BssMI GATC 1 cut(s) 331
BssNI GRCGYC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 252
BstDSI CCRYGG 2 cut(s) 118, 240
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMCI CGRYCG 2 cut(s) 186, 216
BstMWI GCNNNNNNNGC 3 cut(s) 82, 130, 212
BstSCI CCNGG 2 cut(s) 15, 317
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 1 cut(s) 262
BstZI CGGCCG 1 cut(s) 213
BsuRI GGCC 3 cut(s) 160, 215, 250
BtgI CCRYGG 2 cut(s) 118, 240
BtgZI GCGATG 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 4 cut(s) 158, 159, 221, 249
CseI GACGC 2 cut(s) 89, 251
CspAI ACCGGT 1 cut(s) 185
CviAII CATG 5 cut(s) 119, 177, 230, 287, 360
CviJI RGCY 6 cut(s) 124, 160, 206, 215, 239, 250
CviKI_1 RGCY 6 cut(s) 124, 160, 206, 215, 239, 250
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 213
EagI CGGCCG 1 cut(s) 213
EciI GGCGGA 1 cut(s) 213
EclXI CGGCCG 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 221
Eco52I CGGCCG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 5 cut(s) 122, 180, 233, 290, 363
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 1 cut(s) 155
FatI CATG 5 cut(s) 118, 176, 229, 286, 359
FauI CCCGC 2 cut(s) 259, 301
FauNDI CATATG 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 77, 167
GlaI GCGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 213
HaeIII GGCC 3 cut(s) 160, 215, 250
HapII CCGG 4 cut(s) 17, 186, 255, 319
HgaI GACGC 2 cut(s) 89, 251
HhaI GCGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 5 cut(s) 122, 180, 233, 290, 363
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 314
HpaII CCGG 4 cut(s) 17, 186, 255, 319
Hpy166II GTNNAC 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 85, 108
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 130, 212
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 5 cut(s) 122, 180, 233, 290, 363
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 2 cut(s) 203, 257
LpnPI CCDG 4 cut(s) 30, 199, 268, 332
MaeI CTAG 2 cut(s) 77, 167
MaeIII GTNAC 1 cut(s) 335
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 162
MnlI CCTC 4 cut(s) 19, 184, 211, 240
MspI CCGG 4 cut(s) 17, 186, 255, 319
MspR9I CCNGG 2 cut(s) 17, 319
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 3 cut(s) 82, 130, 212
NciI CCSGG 2 cut(s) 17, 319
NcoI CCATGG 1 cut(s) 118
NdeI CATATG 1 cut(s) 267
NdeII GATC 1 cut(s) 331
NlaIII CATG 5 cut(s) 122, 180, 233, 290, 363
NlaIV GGNNCC 5 cut(s) 160, 222, 282, 298, 355
NmeAIII GCCGAG 1 cut(s) 241
PfeI GAWTC 1 cut(s) 314
PinAI ACCGGT 1 cut(s) 185
PkrI GCNGC 1 cut(s) 214
PspN4I GGNNCC 5 cut(s) 160, 222, 282, 298, 355
PspOMI GGGCCC 1 cut(s) 158
PspPI GGNCC 4 cut(s) 158, 159, 221, 249
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 4 cut(s) 158, 159, 221, 249
ScrFI CCNGG 2 cut(s) 17, 319
SduI GDGCHC 1 cut(s) 162
SetI ASST 2 cut(s) 149, 208
SinI GGWCC 1 cut(s) 221
SsiI CCGC 8 cut(s) 74, 212, 224, 252, 284, 300, 308, 357
SspMI CTAG 2 cut(s) 77, 167
StyD4I CCNGG 2 cut(s) 15, 317
StyI CCWWGG 1 cut(s) 118
TaqI TCGA 1 cut(s) 182
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XspI CTAG 2 cut(s) 77, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.