Protein ALWAYS EARLY
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 460 |
| AciI | CCGC | 4 cut(s) | 421, 458, 487, 527 |
| AclWI | GGATC | 5 cut(s) | 81, 335, 348, 355, 390 |
| AcoI | YGGCCR | 2 cut(s) | 364, 418 |
| AcuI | CTGAAG | 3 cut(s) | 127, 178, 336 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 343, 344, 373 |
| AgsI | TTSAA | 6 cut(s) | 158, 210, 224, 261, 333, 495 |
| AluBI | AGCT | 2 cut(s) | 498, 543 |
| AluI | AGCT | 2 cut(s) | 498, 543 |
| Alw21I | GWGCWC | 1 cut(s) | 484 |
| AlwI | GGATC | 5 cut(s) | 81, 335, 348, 355, 390 |
| AoxI | GGCC | 5 cut(s) | 355, 364, 418, 448, 475 |
| ApeKI | GCWGC | 2 cut(s) | 465, 540 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 22, 45, 54, 77 |
| AspLEI | GCGC | 1 cut(s) | 71 |
| AspS9I | GGNCC | 2 cut(s) | 356, 449 |
| AsuC2I | CCSGG | 2 cut(s) | 338, 345 |
| BalI | TGGCCA | 1 cut(s) | 366 |
| BamHI | GGATCC | 1 cut(s) | 340 |
| BbsI | GAAGAC | 2 cut(s) | 58, 217 |
| Bbv12I | GWGCWC | 1 cut(s) | 484 |
| BbvI | GCAGC | 2 cut(s) | 477, 552 |
| BccI | CCATC | 1 cut(s) | 514 |
| BceAI | ACGGC | 1 cut(s) | 474 |
| BclI | TGATCA | 1 cut(s) | 515 |
| BcnI | CCSGG | 2 cut(s) | 338, 345 |
| BfaI | CTAG | 1 cut(s) | 379 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 363, 474 |
| BisI | GCNGC | 4 cut(s) | 421, 466, 487, 541 |
| BlsI | GCNGC | 4 cut(s) | 422, 467, 488, 542 |
| Bme1390I | CCNGG | 2 cut(s) | 338, 345 |
| BmgT120I | GGNCC | 2 cut(s) | 356, 449 |
| BmiI | GGNNCC | 1 cut(s) | 342 |
| BmrFI | CCNGG | 2 cut(s) | 338, 345 |
| BmrI | ACTGGG | 1 cut(s) | 246 |
| BmsI | GCATC | 2 cut(s) | 56, 91 |
| BmuI | ACTGGG | 1 cut(s) | 246 |
| BpiI | GAAGAC | 2 cut(s) | 58, 217 |
| BpuEI | CTTGAG | 1 cut(s) | 116 |
| BpuMI | CCSGG | 2 cut(s) | 338, 345 |
| BsaBI | GATNNNNATC | 1 cut(s) | 517 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 343, 344, 373 |
| Bse1I | ACTGG | 4 cut(s) | 241, 278, 303, 421 |
| Bse3DI | GCAATG | 1 cut(s) | 160 |
| Bse8I | GATNNNNATC | 1 cut(s) | 517 |
| BseGI | GGATG | 2 cut(s) | 106, 518 |
| BseJI | GATNNNNATC | 1 cut(s) | 517 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 343, 344, 373 |
| BseMI | GCAATG | 1 cut(s) | 160 |
| BseNI | ACTGG | 4 cut(s) | 241, 278, 303, 421 |
| BseXI | GCAGC | 2 cut(s) | 477, 552 |
| BsgI | GTGCAG | 1 cut(s) | 118 |
| Bsh1236I | CGCG | 1 cut(s) | 460 |
| BshFI | GGCC | 5 cut(s) | 357, 366, 420, 450, 477 |
| BsiHKAI | GWGCWC | 1 cut(s) | 484 |
| BsiSI | CCGG | 2 cut(s) | 338, 344 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 343, 344, 373 |
| BsnI | GGCC | 5 cut(s) | 357, 366, 420, 450, 477 |
| Bsp1286I | GDGCHC | 1 cut(s) | 484 |
| Bsp143I | GATC | 5 cut(s) | 86, 340, 347, 382, 515 |
| BspACI | CCGC | 4 cut(s) | 421, 458, 487, 527 |
| BspANI | GGCC | 5 cut(s) | 357, 366, 420, 450, 477 |
| BspFNI | CGCG | 1 cut(s) | 460 |
| BspHI | TCATGA | 1 cut(s) | 389 |
| BspLI | GGNNCC | 1 cut(s) | 342 |
| BspPI | GGATC | 5 cut(s) | 81, 335, 348, 355, 390 |
| BsrDI | GCAATG | 1 cut(s) | 160 |
| BsrI | ACTGG | 4 cut(s) | 241, 278, 303, 421 |
| BssMI | GATC | 5 cut(s) | 86, 340, 347, 382, 515 |
| Bst4CI | ACNGT | 1 cut(s) | 320 |
| Bst6I | CTCTTC | 1 cut(s) | 62 |
| BstC8I | GCNNGC | 2 cut(s) | 484, 500 |
| BstDEI | CTNAG | 1 cut(s) | 166 |
| BstF5I | GGATG | 2 cut(s) | 106, 518 |
| BstFNI | CGCG | 1 cut(s) | 460 |
| BstHHI | GCGC | 1 cut(s) | 71 |
| BstKTI | GATC | 5 cut(s) | 89, 343, 350, 385, 518 |
| BstMBI | GATC | 5 cut(s) | 86, 340, 347, 382, 515 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 363, 384, 474, 483, 495 |
| BstSCI | CCNGG | 2 cut(s) | 336, 343 |
| BstUI | CGCG | 1 cut(s) | 460 |
| BstV1I | GCAGC | 2 cut(s) | 477, 552 |
| BstV2I | GAAGAC | 2 cut(s) | 58, 217 |
| BstX2I | RGATCY | 3 cut(s) | 86, 340, 347 |
| BstYI | RGATCY | 3 cut(s) | 86, 340, 347 |
| BsuRI | GGCC | 5 cut(s) | 357, 366, 420, 450, 477 |
| BtsCI | GGATG | 2 cut(s) | 106, 518 |
| BtsI | GCAGTG | 1 cut(s) | 214 |
| BtsIMutI | CAGTG | 3 cut(s) | 214, 271, 414 |
| Cac8I | GCNNGC | 2 cut(s) | 484, 500 |
| CciI | TCATGA | 1 cut(s) | 389 |
| CfoI | GCGC | 1 cut(s) | 71 |
| Cfr13I | GGNCC | 2 cut(s) | 356, 449 |
| CviAII | CATG | 2 cut(s) | 42, 390 |
| DdeI | CTNAG | 1 cut(s) | 166 |
| DpnI | GATC | 5 cut(s) | 88, 342, 349, 384, 517 |
| DpnII | GATC | 5 cut(s) | 86, 340, 347, 382, 515 |
| EaeI | YGGCCR | 2 cut(s) | 364, 418 |
| Eam1104I | CTCTTC | 1 cut(s) | 62 |
| EarI | CTCTTC | 1 cut(s) | 62 |
| EciI | GGCGGA | 1 cut(s) | 516 |
| Eco57I | CTGAAG | 3 cut(s) | 127, 178, 336 |
| FaeI | CATG | 2 cut(s) | 45, 393 |
| FaiI | YATR | 3 cut(s) | 43, 204, 391 |
| FatI | CATG | 2 cut(s) | 41, 389 |
| FauI | CCCGC | 1 cut(s) | 465 |
| FbaI | TGATCA | 1 cut(s) | 515 |
| Fnu4HI | GCNGC | 4 cut(s) | 421, 466, 487, 541 |
| FokI | GGATG | 2 cut(s) | 113, 525 |
| Fsp4HI | GCNGC | 4 cut(s) | 421, 466, 487, 541 |
| FspBI | CTAG | 1 cut(s) | 379 |
| GlaI | GCGC | 1 cut(s) | 70 |
| GluI | GCNGC | 4 cut(s) | 421, 466, 487, 541 |
| HaeIII | GGCC | 5 cut(s) | 357, 366, 420, 450, 477 |
| HapII | CCGG | 2 cut(s) | 338, 344 |
| HhaI | GCGC | 1 cut(s) | 71 |
| Hin1II | CATG | 2 cut(s) | 45, 393 |
| Hin6I | GCGC | 1 cut(s) | 69 |
| HinP1I | GCGC | 1 cut(s) | 69 |
| HinfI | GANTC | 4 cut(s) | 54, 126, 188, 333 |
| HpaII | CCGG | 2 cut(s) | 338, 344 |
| Hpy188I | TCNGA | 2 cut(s) | 14, 269 |
| Hpy188III | TCNNGA | 3 cut(s) | 330, 390, 510 |
| HpyAV | CCTTC | 3 cut(s) | 202, 434, 541 |
| HpyCH4III | ACNGT | 1 cut(s) | 320 |
| HpyCH4V | TGCA | 2 cut(s) | 45, 135 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 363, 384, 474, 483, 495 |
| HpyF3I | CTNAG | 1 cut(s) | 166 |
| Hsp92II | CATG | 2 cut(s) | 45, 393 |
| HspAI | GCGC | 1 cut(s) | 69 |
| Ksp22I | TGATCA | 1 cut(s) | 515 |
| Kzo9I | GATC | 5 cut(s) | 86, 340, 347, 382, 515 |
| LmnI | GCTCC | 1 cut(s) | 407 |
| Lsp1109I | GCAGC | 2 cut(s) | 477, 552 |
| LweI | GCATC | 2 cut(s) | 56, 91 |
| MaeI | CTAG | 1 cut(s) | 379 |
| MaeIII | GTNAC | 2 cut(s) | 197, 314 |
| MalI | GATC | 5 cut(s) | 88, 342, 349, 384, 517 |
| MboI | GATC | 5 cut(s) | 86, 340, 347, 382, 515 |
| MboII | GAAGA | 8 cut(s) | 25, 49, 63, 159, 222, 342, 405, 513 |
| MfeI | CAATTG | 1 cut(s) | 360 |
| MflI | RGATCY | 3 cut(s) | 86, 340, 347 |
| MhlI | GDGCHC | 1 cut(s) | 484 |
| MlsI | TGGCCA | 1 cut(s) | 366 |
| MluCI | AATT | 2 cut(s) | 309, 360 |
| MluNI | TGGCCA | 1 cut(s) | 366 |
| MlyI | GAGTC | 1 cut(s) | 48 |
| MnlI | CCTC | 7 cut(s) | 91, 137, 140, 245, 367, 422, 455 |
| Mox20I | TGGCCA | 1 cut(s) | 366 |
| MscI | TGGCCA | 1 cut(s) | 366 |
| MseI | TTAA | 1 cut(s) | 307 |
| MslI | CAYNNNNRTG | 2 cut(s) | 46, 511 |
| Msp20I | TGGCCA | 1 cut(s) | 366 |
| MspI | CCGG | 2 cut(s) | 338, 344 |
| MspR9I | CCNGG | 2 cut(s) | 338, 345 |
| MunI | CAATTG | 1 cut(s) | 360 |
| MvnI | CGCG | 1 cut(s) | 460 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 363, 384, 474, 483, 495 |
| NciI | CCSGG | 2 cut(s) | 338, 345 |
| NdeII | GATC | 5 cut(s) | 86, 340, 347, 382, 515 |
| NlaIII | CATG | 2 cut(s) | 45, 393 |
| NlaIV | GGNNCC | 1 cut(s) | 342 |
| NmeAIII | GCCGAG | 1 cut(s) | 503 |
| NmuCI | GTSAC | 1 cut(s) | 314 |
| PagI | TCATGA | 1 cut(s) | 389 |
| PfeI | GAWTC | 3 cut(s) | 126, 188, 333 |
| PfoI | TCCNGGA | 2 cut(s) | 336, 343 |
| PkrI | GCNGC | 4 cut(s) | 422, 467, 488, 542 |
| PleI | GAGTC | 1 cut(s) | 48 |
| PpsI | GAGTC | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 1 cut(s) | 342 |
| PspPI | GGNCC | 2 cut(s) | 356, 449 |
| PsuI | RGATCY | 3 cut(s) | 86, 340, 347 |
| RseI | CAYNNNNRTG | 2 cut(s) | 46, 511 |
| SaqAI | TTAA | 1 cut(s) | 307 |
| SatI | GCNGC | 4 cut(s) | 421, 466, 487, 541 |
| Sau3AI | GATC | 5 cut(s) | 86, 340, 347, 382, 515 |
| Sau96I | GGNCC | 2 cut(s) | 356, 449 |
| SchI | GAGTC | 1 cut(s) | 48 |
| ScrFI | CCNGG | 2 cut(s) | 338, 345 |
| SduI | GDGCHC | 1 cut(s) | 484 |
| SetI | ASST | 3 cut(s) | 433, 500, 545 |
| SfaNI | GCATC | 2 cut(s) | 56, 91 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 363 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 46, 511 |
| SmlI | CTYRAG | 1 cut(s) | 95 |
| SmoI | CTYRAG | 1 cut(s) | 95 |
| Sse9I | AATT | 2 cut(s) | 309, 360 |
| SsiI | CCGC | 4 cut(s) | 421, 458, 487, 527 |
| SspMI | CTAG | 1 cut(s) | 379 |
| StyD4I | CCNGG | 2 cut(s) | 336, 343 |
| TaaI | ACNGT | 1 cut(s) | 320 |
| TaqI | TCGA | 3 cut(s) | 142, 427, 545 |
| TasI | AATT | 2 cut(s) | 309, 360 |
| TauI | GCSGC | 2 cut(s) | 423, 489 |
| TfiI | GAWTC | 3 cut(s) | 126, 188, 333 |
| Tru1I | TTAA | 1 cut(s) | 307 |
| Tru9I | TTAA | 1 cut(s) | 307 |
| TscAI | CASTG | 3 cut(s) | 221, 278, 421 |
| TseFI | GTSAC | 1 cut(s) | 314 |
| TseI | GCWGC | 2 cut(s) | 465, 540 |
| Tsp45I | GTSAC | 1 cut(s) | 314 |
| TspDTI | ATGAA | 3 cut(s) | 12, 64, 406 |
| TspGWI | ACGGA | 1 cut(s) | 79 |
| TspRI | CASTG | 3 cut(s) | 221, 278, 421 |
| XspI | CTAG | 1 cut(s) | 379 |