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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 164 |
| AciI | CCGC | 2 cut(s) | 16, 98 |
| AcoI | YGGCCR | 1 cut(s) | 386 |
| AfaI | GTAC | 2 cut(s) | 192, 380 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 97, 101, 164 |
| AflIII | ACRYGT | 1 cut(s) | 375 |
| AgsI | TTSAA | 2 cut(s) | 115, 457 |
| AjnI | CCWGG | 1 cut(s) | 257 |
| AluBI | AGCT | 1 cut(s) | 238 |
| AluI | AGCT | 1 cut(s) | 238 |
| Alw21I | GWGCWC | 1 cut(s) | 325 |
| Alw26I | GTCTC | 1 cut(s) | 359 |
| AoxI | GGCC | 1 cut(s) | 386 |
| ApeKI | GCWGC | 1 cut(s) | 168 |
| AseI | ATTAAT | 1 cut(s) | 395 |
| AsuHPI | GGTGA | 2 cut(s) | 80, 301 |
| BalI | TGGCCA | 1 cut(s) | 388 |
| BbsI | GAAGAC | 2 cut(s) | 156, 503 |
| Bbv12I | GWGCWC | 1 cut(s) | 325 |
| BbvI | GCAGC | 1 cut(s) | 180 |
| BccI | CCATC | 3 cut(s) | 139, 406, 454 |
| BceAI | ACGGC | 2 cut(s) | 93, 254 |
| BciT130I | CCWGG | 1 cut(s) | 259 |
| BclI | TGATCA | 1 cut(s) | 279 |
| BcoDI | GTCTC | 1 cut(s) | 359 |
| BfaI | CTAG | 1 cut(s) | 514 |
| BisI | GCNGC | 1 cut(s) | 169 |
| BlsI | GCNGC | 1 cut(s) | 170 |
| Bme1390I | CCNGG | 1 cut(s) | 259 |
| BmiI | GGNNCC | 1 cut(s) | 488 |
| BmrFI | CCNGG | 1 cut(s) | 259 |
| BmsI | GCATC | 2 cut(s) | 244, 452 |
| BpiI | GAAGAC | 2 cut(s) | 156, 503 |
| BpuEI | CTTGAG | 1 cut(s) | 512 |
| BsaI | GGTCTC | 1 cut(s) | 359 |
| BsaJI | CCNNGG | 1 cut(s) | 501 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 97, 101, 164 |
| Bse1I | ACTGG | 2 cut(s) | 389, 488 |
| BseBI | CCWGG | 1 cut(s) | 259 |
| BseDI | CCNNGG | 1 cut(s) | 501 |
| BseGI | GGATG | 2 cut(s) | 76, 467 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 97, 101, 164 |
| BseMII | CTCAG | 3 cut(s) | 208, 216, 338 |
| BseNI | ACTGG | 2 cut(s) | 389, 488 |
| BseRI | GAGGAG | 1 cut(s) | 80 |
| BseXI | GCAGC | 1 cut(s) | 180 |
| Bsh1285I | CGRYCG | 1 cut(s) | 16 |
| BshFI | GGCC | 1 cut(s) | 388 |
| BsiEI | CGRYCG | 1 cut(s) | 16 |
| BsiHKAI | GWGCWC | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 97, 101, 164 |
| BsmAI | GTCTC | 1 cut(s) | 359 |
| BsnI | GGCC | 1 cut(s) | 388 |
| Bso31I | GGTCTC | 1 cut(s) | 359 |
| Bsp1286I | GDGCHC | 1 cut(s) | 325 |
| Bsp1407I | TGTACA | 1 cut(s) | 378 |
| Bsp143I | GATC | 2 cut(s) | 279, 327 |
| BspACI | CCGC | 2 cut(s) | 16, 98 |
| BspANI | GGCC | 1 cut(s) | 388 |
| BspCNI | CTCAG | 3 cut(s) | 207, 217, 337 |
| BspLI | GGNNCC | 1 cut(s) | 488 |
| BspTNI | GGTCTC | 1 cut(s) | 359 |
| BsrGI | TGTACA | 1 cut(s) | 378 |
| BsrI | ACTGG | 2 cut(s) | 389, 488 |
| BssECI | CCNNGG | 1 cut(s) | 501 |
| BssMI | GATC | 2 cut(s) | 279, 327 |
| BssT1I | CCWWGG | 1 cut(s) | 501 |
| Bst2UI | CCWGG | 1 cut(s) | 259 |
| Bst4CI | ACNGT | 1 cut(s) | 443 |
| Bst6I | CTCTTC | 2 cut(s) | 135, 240 |
| BstAUI | TGTACA | 1 cut(s) | 378 |
| BstC8I | GCNNGC | 2 cut(s) | 186, 240 |
| BstDEI | CTNAG | 3 cut(s) | 194, 225, 324 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 99 |
| BstF5I | GGATG | 2 cut(s) | 76, 467 |
| BstKTI | GATC | 2 cut(s) | 282, 330 |
| BstMAI | GTCTC | 1 cut(s) | 359 |
| BstMBI | GATC | 2 cut(s) | 279, 327 |
| BstMCI | CGRYCG | 1 cut(s) | 16 |
| BstNI | CCWGG | 1 cut(s) | 259 |
| BstNSI | RCATGY | 1 cut(s) | 379 |
| BstSCI | CCNGG | 1 cut(s) | 257 |
| BstV1I | GCAGC | 1 cut(s) | 180 |
| BstV2I | GAAGAC | 2 cut(s) | 156, 503 |
| BsuRI | GGCC | 1 cut(s) | 388 |
| BtsCI | GGATG | 2 cut(s) | 76, 467 |
| Cac8I | GCNNGC | 2 cut(s) | 186, 240 |
| CseI | GACGC | 1 cut(s) | 190 |
| Csp6I | GTAC | 2 cut(s) | 191, 379 |
| CviAII | CATG | 2 cut(s) | 333, 376 |
| CviJI | RGCY | 6 cut(s) | 80, 171, 188, 238, 269, 388 |
| CviKI_1 | RGCY | 6 cut(s) | 80, 171, 188, 238, 269, 388 |
| CviQI | GTAC | 2 cut(s) | 191, 379 |
| DdeI | CTNAG | 3 cut(s) | 194, 225, 324 |
| DpnI | GATC | 2 cut(s) | 281, 329 |
| DpnII | GATC | 2 cut(s) | 279, 327 |
| DraI | TTTAAA | 1 cut(s) | 177 |
| EaeI | YGGCCR | 1 cut(s) | 386 |
| Eam1104I | CTCTTC | 2 cut(s) | 135, 240 |
| EarI | CTCTTC | 2 cut(s) | 135, 240 |
| Eco130I | CCWWGG | 1 cut(s) | 501 |
| Eco31I | GGTCTC | 1 cut(s) | 359 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 99 |
| EcoRII | CCWGG | 1 cut(s) | 257 |
| EcoT14I | CCWWGG | 1 cut(s) | 501 |
| ErhI | CCWWGG | 1 cut(s) | 501 |
| FaeI | CATG | 2 cut(s) | 336, 379 |
| FaiI | YATR | 9 cut(s) | 53, 286, 334, 341, 350, 352, 371, 377, 432 |
| FatI | CATG | 2 cut(s) | 332, 375 |
| FauNDI | CATATG | 1 cut(s) | 350 |
| FbaI | TGATCA | 1 cut(s) | 279 |
| Fnu4HI | GCNGC | 1 cut(s) | 169 |
| FokI | GGATG | 2 cut(s) | 83, 474 |
| Fsp4HI | GCNGC | 1 cut(s) | 169 |
| FspBI | CTAG | 1 cut(s) | 514 |
| GluI | GCNGC | 1 cut(s) | 169 |
| HaeIII | GGCC | 1 cut(s) | 388 |
| HgaI | GACGC | 1 cut(s) | 190 |
| Hin1II | CATG | 2 cut(s) | 336, 379 |
| HincII | GTYRAC | 1 cut(s) | 231 |
| HindII | GTYRAC | 1 cut(s) | 231 |
| HinfI | GANTC | 2 cut(s) | 152, 209 |
| HphI | GGTGA | 2 cut(s) | 80, 301 |
| Hpy166II | GTNNAC | 3 cut(s) | 121, 231, 356 |
| Hpy188I | TCNGA | 3 cut(s) | 197, 327, 402 |
| Hpy188III | TCNNGA | 1 cut(s) | 409 |
| Hpy8I | GTNNAC | 3 cut(s) | 121, 231, 356 |
| HpyAV | CCTTC | 4 cut(s) | 95, 101, 410, 476 |
| HpyCH4III | ACNGT | 1 cut(s) | 443 |
| HpyF3I | CTNAG | 3 cut(s) | 194, 225, 324 |
| Hsp92II | CATG | 2 cut(s) | 336, 379 |
| Ksp22I | TGATCA | 1 cut(s) | 279 |
| Kzo9I | GATC | 2 cut(s) | 279, 327 |
| LpnPI | CCDG | 9 cut(s) | 108, 112, 170, 224, 244, 271, 331, 370, 469 |
| Lsp1109I | GCAGC | 1 cut(s) | 180 |
| LweI | GCATC | 2 cut(s) | 244, 452 |
| MaeI | CTAG | 1 cut(s) | 514 |
| MaeIII | GTNAC | 3 cut(s) | 73, 220, 420 |
| MalI | GATC | 2 cut(s) | 281, 329 |
| MboI | GATC | 2 cut(s) | 279, 327 |
| MboII | GAAGA | 8 cut(s) | 152, 161, 257, 274, 295, 298, 461, 508 |
| MhlI | GDGCHC | 1 cut(s) | 325 |
| MlsI | TGGCCA | 1 cut(s) | 388 |
| MluCI | AATT | 1 cut(s) | 396 |
| MluNI | TGGCCA | 1 cut(s) | 388 |
| MlyI | GAGTC | 1 cut(s) | 146 |
| MnlI | CCTC | 2 cut(s) | 58, 61 |
| Mox20I | TGGCCA | 1 cut(s) | 388 |
| MscI | TGGCCA | 1 cut(s) | 388 |
| MseI | TTAA | 2 cut(s) | 176, 395 |
| MslI | CAYNNNNRTG | 1 cut(s) | 374 |
| Msp20I | TGGCCA | 1 cut(s) | 388 |
| MspR9I | CCNGG | 1 cut(s) | 259 |
| MvaI | CCWGG | 1 cut(s) | 259 |
| NdeI | CATATG | 1 cut(s) | 350 |
| NdeII | GATC | 2 cut(s) | 279, 327 |
| NlaIII | CATG | 2 cut(s) | 336, 379 |
| NlaIV | GGNNCC | 1 cut(s) | 488 |
| NmuCI | GTSAC | 1 cut(s) | 73 |
| NspI | RCATGY | 1 cut(s) | 379 |
| PciI | ACATGT | 1 cut(s) | 375 |
| PfeI | GAWTC | 1 cut(s) | 209 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 164 |
| PkrI | GCNGC | 1 cut(s) | 170 |
| PleI | GAGTC | 1 cut(s) | 146 |
| PpsI | GAGTC | 1 cut(s) | 146 |
| PscI | ACATGT | 1 cut(s) | 375 |
| PshBI | ATTAAT | 1 cut(s) | 395 |
| Psp6I | CCWGG | 1 cut(s) | 257 |
| PspGI | CCWGG | 1 cut(s) | 257 |
| PspN4I | GGNNCC | 1 cut(s) | 488 |
| RsaI | GTAC | 2 cut(s) | 192, 380 |
| RsaNI | GTAC | 2 cut(s) | 191, 379 |
| RseI | CAYNNNNRTG | 1 cut(s) | 374 |
| SaqAI | TTAA | 2 cut(s) | 176, 395 |
| SatI | GCNGC | 1 cut(s) | 169 |
| Sau3AI | GATC | 2 cut(s) | 279, 327 |
| SchI | GAGTC | 1 cut(s) | 146 |
| ScrFI | CCNGG | 1 cut(s) | 259 |
| SduI | GDGCHC | 1 cut(s) | 325 |
| SetI | ASST | 5 cut(s) | 93, 207, 240, 320, 515 |
| SfaNI | GCATC | 2 cut(s) | 244, 452 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 374 |
| SmlI | CTYRAG | 1 cut(s) | 491 |
| SmoI | CTYRAG | 1 cut(s) | 491 |
| Sse9I | AATT | 1 cut(s) | 396 |
| SsiI | CCGC | 2 cut(s) | 16, 98 |
| SspI | AATATT | 1 cut(s) | 162 |
| SspMI | CTAG | 1 cut(s) | 514 |
| StyD4I | CCNGG | 1 cut(s) | 257 |
| StyI | CCWWGG | 1 cut(s) | 501 |
| TaaI | ACNGT | 1 cut(s) | 443 |
| TaqI | TCGA | 1 cut(s) | 12 |
| TasI | AATT | 1 cut(s) | 396 |
| TatI | WGTACW | 2 cut(s) | 190, 378 |
| TfiI | GAWTC | 1 cut(s) | 209 |
| Tru1I | TTAA | 2 cut(s) | 176, 395 |
| Tru9I | TTAA | 2 cut(s) | 176, 395 |
| TseFI | GTSAC | 1 cut(s) | 73 |
| TseI | GCWGC | 1 cut(s) | 168 |
| Tsp45I | GTSAC | 1 cut(s) | 73 |
| TspGWI | ACGGA | 1 cut(s) | 373 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 164 |
| VspI | ATTAAT | 1 cut(s) | 395 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 99 |
| XceI | RCATGY | 1 cut(s) | 379 |
| XspI | CTAG | 1 cut(s) | 514 |