Rmu_sc0002538.1_g000018

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002538.1
OG0000060
Physical Location & Seq
Forward (+)
68213 .. 70056
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002538.1_g000018.1.cds

Sequence Viewer

Length: 1599 bp
atgaccggaattcagagagttcagataactgtactgagacaacatttaaccaacccctgcaaaaaaaaatttgacgaaatcagaaagaggaagcgacaacaggcagaacagatttctgatgaagaatctgctgaagaagaagtcaatgaagattcaggacgattgactgaagatgaatcagaatcagaaggtgaacagacaacgaagaggtttgtaatcaaaacaagacaacgaccaaaaaggaaaccagttcaagaggaagaggattcagaagaagaaaaaacaaagaggaagaaagccaagaagcaaaagaaaggggcaatgaaaaaagagcagaaaaaagagacccacaaagcaaagattgagtgtaagcaacagaagtgcatgctcagtgcattctggagaatggtcaacgcaaacaaggatataataccagacaaaacaaaagcgattttgaggggtacagactttggtgaaatgatggaaccgttctggcaggacaagataaccgagatccagctccacaagcatgaagcggacctggagatactcatgaagcacttcgaccgcacagacaacaagtggaagtttggggatgttgttatggaaataacggaggaggatgtcacggctttatttcaccttccggcggaaggagaagtgttcaatgtgaataggagggtggtaagggaagagatggaagactccccaatatttggcagccctttaaagaagctggctgtcctcagaacaaaggtggaatcgaagctggtaactgagttgacaaagccggcaaaagagaaagatgccaggaagatagccatgctaatgatcacatatctattcagcacattcttcttcgcccgaaccggtgctcagatcacatgggatatggtcgccttatgtgaacggattgagaacataaacatgtacaactggccaagattaattctgaacttcttgatggaagggttacaaaagtataggaggaacagtccatctgttttgaatggatgccttcttctcatcaattactggttccttgagaagaccaaggcaaagacctggatacctggaaagcagaatgaaactccacgattcatccgatggtcgataaaggaaatatttagcctggagcagatgtacatgaacaagaacttagccgtggatctgataaaagctggaccatggtttgcgaaaattagactggaagacctcgagctgggtgatgaggtgcaggacacaccaagctttgacaactgggtgagtggctcaactgagcttgtctgctgccatcccacaaaagaaatggaggcaaagctaggaaggcttgccaaagcaaatgaggaactgaatgcgcataacaaagatctatggggcaagctgaaggttgccaatgagaggattaaagagctggaaattgaaaagagggcaaaaaataacctcatcagggcgttgtacatccggcttgaaaaggagaagggagaggtccccccaccacaaagacaacttgagatagttcctttcatgacgaaagtggtcccccaagatgaagttgaggatgaaaatccaaactttggaccaagcgtcggagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

532

Amino Acids

62.3

Weight (kDa)

8.54

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1359
AccB7I CCANNNNNTGG 2 cut(s) 716, 1577
AciI CCGC 3 cut(s) 536, 568, 650
AclWI GGATC 2 cut(s) 508, 1176
AcoI YGGCCR 1 cut(s) 938
AcsI RAATTY 2 cut(s) 9, 68
AcuI CTGAAG 3 cut(s) 153, 189, 1406
AfaI GTAC 5 cut(s) 33, 463, 932, 1145, 1460
AfiI CCNNNNNNNGG 8 cut(s) 649, 653, 716, 1222, 1401, 1450, 1577, 1589
AflIII ACRYGT 1 cut(s) 927
AgeI ACCGGT 1 cut(s) 869
AgsI TTSAA 5 cut(s) 254, 667, 1009, 1424, 1472
AhdI GACNNNNNGTC 1 cut(s) 1586
AjnI CCWGG 5 cut(s) 540, 809, 1064, 1072, 1131
Alw21I GWGCWC 1 cut(s) 877
Alw26I GTCTC 2 cut(s) 31, 338
AlwI GGATC 2 cut(s) 508, 1176
Ama87I CYCGRG 1 cut(s) 1217
AoxI GGCC 1 cut(s) 938
ApeKI GCWGC 2 cut(s) 720, 1290
ApoI RAATTY 2 cut(s) 9, 68
AseI ATTAAT 1 cut(s) 947
AsiGI ACCGGT 1 cut(s) 869
Asp700I GAANNNNTTC 1 cut(s) 560
AspLEI GCGC 1 cut(s) 1360
AspS9I GGNCC 5 cut(s) 538, 1184, 1489, 1540, 1580
AsuHPI GGTGA 5 cut(s) 203, 485, 632, 1238, 1276
AvaI CYCGRG 1 cut(s) 1217
AvaII GGWCC 5 cut(s) 538, 1184, 1489, 1540, 1580
BalI TGGCCA 1 cut(s) 940
BbsI GAAGAC 3 cut(s) 708, 1055, 1218
Bbv12I GWGCWC 1 cut(s) 877
BbvI GCAGC 2 cut(s) 732, 1277
BccI CCATC 6 cut(s) 475, 691, 958, 1006, 1101, 1302
BceAI ACGGC 2 cut(s) 645, 1148
BciT130I CCWGG 5 cut(s) 542, 811, 1066, 1074, 1133
BciVI GTATCC 1 cut(s) 1062
BclI TGATCA 1 cut(s) 831
BcoDI GTCTC 2 cut(s) 31, 338
BfaI CTAG 1 cut(s) 1322
BfuI GTATCC 1 cut(s) 1062
BglII AGATCT 1 cut(s) 1369
BisI GCNGC 2 cut(s) 721, 1291
BlsI GCNGC 2 cut(s) 722, 1292
Bme1390I CCNGG 5 cut(s) 542, 811, 1066, 1074, 1133
Bme18I GGWCC 5 cut(s) 538, 1184, 1489, 1540, 1580
BmeRI GACNNNNNGTC 1 cut(s) 1586
BmeT110I CYCGRG 1 cut(s) 1217
BmgT120I GGNCC 5 cut(s) 538, 1184, 1489, 1540, 1580
BmiI GGNNCC 4 cut(s) 486, 1040, 1491, 1542
BmrFI CCNGG 5 cut(s) 542, 811, 1066, 1074, 1133
BmrI ACTGGG 1 cut(s) 1270
BmsI GCATC 2 cut(s) 796, 1004
BmuI ACTGGG 1 cut(s) 1270
BpiI GAAGAC 3 cut(s) 708, 1055, 1218
BpmI CTGGAG 3 cut(s) 421, 563, 1154
BpuEI CTTGAG 2 cut(s) 1064, 1532
BsaBI GATNNNNATC 1 cut(s) 1566
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 3 cut(s) 1053, 1164, 1187
BsaWI WCCGGW 2 cut(s) 5, 869
BsaXI ACNNNNNCTCC 4 cut(s) 979, 1009, 1127, 1157
Bsc4I CCNNNNNNNGG 8 cut(s) 649, 653, 716, 1222, 1401, 1450, 1577, 1589
Bse118I RCCGGY 2 cut(s) 790, 869
Bse1I ACTGG 5 cut(s) 248, 941, 1040, 1212, 1265
Bse3DI GCAATG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 1566
BseBI CCWGG 5 cut(s) 542, 811, 1066, 1074, 1133
BseDI CCNNGG 3 cut(s) 1053, 1164, 1187
BseGI GGATG 7 cut(s) 601, 628, 1019, 1101, 1294, 1461, 1567
BseJI GATNNNNATC 1 cut(s) 1566
BseLI CCNNNNNNNGG 8 cut(s) 649, 653, 716, 1222, 1401, 1450, 1577, 1589
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 6 cut(s) 26, 403, 760, 768, 890, 1269
BseNI ACTGG 5 cut(s) 248, 941, 1040, 1212, 1265
BseRI GAGGAG 1 cut(s) 632
BseXI GCAGC 2 cut(s) 732, 1277
BseYI CCCAGC 1 cut(s) 1222
BsgI GTGCAG 1 cut(s) 1256
Bsh1285I CGRYCG 1 cut(s) 568
BshFI GGCC 1 cut(s) 940
BshTI ACCGGT 1 cut(s) 869
BsiEI CGRYCG 1 cut(s) 568
BsiHKAI GWGCWC 1 cut(s) 877
BsiHKCI CYCGRG 1 cut(s) 1217
BsiSI CCGG 5 cut(s) 6, 647, 791, 870, 1465
BslFI GGGAC 2 cut(s) 1475, 1526
BslI CCNNNNNNNGG 8 cut(s) 649, 653, 716, 1222, 1401, 1450, 1577, 1589
BsmAI GTCTC 2 cut(s) 31, 338
BsmFI GGGAC 2 cut(s) 1475, 1526
BsmI GAATGC 2 cut(s) 395, 1360
BsnI GGCC 1 cut(s) 940
Bso31I GGTCTC 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 1217
Bsp1286I GDGCHC 1 cut(s) 877
Bsp1407I TGTACA 3 cut(s) 930, 1143, 1458
Bsp143I GATC 5 cut(s) 513, 831, 879, 1168, 1369
Bsp19I CCATGG 1 cut(s) 1187
BspACI CCGC 3 cut(s) 536, 568, 650
BspANI GGCC 1 cut(s) 940
BspCNI CTCAG 6 cut(s) 27, 402, 759, 769, 889, 1270
BspHI TCATGA 2 cut(s) 552, 1527
BspLI GGNNCC 4 cut(s) 486, 1040, 1491, 1542
BspPI GGATC 2 cut(s) 508, 1176
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 327
BsrFI RCCGGY 2 cut(s) 790, 869
BsrGI TGTACA 3 cut(s) 930, 1143, 1458
BsrI ACTGG 5 cut(s) 248, 941, 1040, 1212, 1265
BssAI RCCGGY 2 cut(s) 790, 869
BssECI CCNNGG 3 cut(s) 1053, 1164, 1187
BssMI GATC 5 cut(s) 513, 831, 879, 1168, 1369
BssT1I CCWWGG 2 cut(s) 1053, 1187
Bst2UI CCWGG 5 cut(s) 542, 811, 1066, 1074, 1133
Bst4CI ACNGT 3 cut(s) 31, 489, 995
Bst6I CTCTTC 3 cut(s) 200, 255, 687
BstAUI TGTACA 3 cut(s) 930, 1143, 1458
BstC8I GCNNGC 5 cut(s) 386, 738, 792, 1332, 1382
BstDEI CTNAG 7 cut(s) 35, 389, 746, 777, 876, 1159, 1278
BstDSI CCRYGG 2 cut(s) 1164, 1187
BstF5I GGATG 7 cut(s) 601, 628, 1019, 1101, 1294, 1461, 1567
BstHHI GCGC 1 cut(s) 1360
BstKTI GATC 5 cut(s) 516, 834, 882, 1171, 1372
BstMAI GTCTC 2 cut(s) 31, 338
BstMBI GATC 5 cut(s) 513, 831, 879, 1168, 1369
BstMCI CGRYCG 1 cut(s) 568
BstMWI GCNNNNNNNGC 2 cut(s) 526, 1327
BstNI CCWGG 5 cut(s) 542, 811, 1066, 1074, 1133
BstNSI RCATGY 2 cut(s) 388, 931
BstSCI CCNGG 5 cut(s) 540, 809, 1064, 1072, 1131
BstV1I GCAGC 2 cut(s) 732, 1277
BstV2I GAAGAC 3 cut(s) 708, 1055, 1218
BstX2I RGATCY 3 cut(s) 513, 1168, 1369
BstYI RGATCY 3 cut(s) 513, 1168, 1369
BsuI GTATCC 1 cut(s) 1062
BsuRI GGCC 1 cut(s) 940
BtgI CCRYGG 2 cut(s) 1164, 1187
BtsCI GGATG 7 cut(s) 601, 628, 1019, 1101, 1294, 1461, 1567
BtsIMutI CAGTG 1 cut(s) 397
Cac8I GCNNGC 5 cut(s) 386, 738, 792, 1332, 1382
CciI TCATGA 2 cut(s) 552, 1527
CfoI GCGC 1 cut(s) 1360
Cfr10I RCCGGY 2 cut(s) 790, 869
Cfr13I GGNCC 5 cut(s) 538, 1184, 1489, 1540, 1580
CseI GACGC 1 cut(s) 1576
Csp6I GTAC 5 cut(s) 32, 462, 931, 1144, 1459
CspAI ACCGGT 1 cut(s) 869
CviAII CATG 9 cut(s) 385, 530, 553, 823, 885, 928, 1147, 1188, 1528
CviQI GTAC 5 cut(s) 32, 462, 931, 1144, 1459
DdeI CTNAG 7 cut(s) 35, 389, 746, 777, 876, 1159, 1278
DpnI GATC 5 cut(s) 515, 833, 881, 1170, 1371
DpnII GATC 5 cut(s) 513, 831, 879, 1168, 1369
DraI TTTAAA 1 cut(s) 729
DriI GACNNNNNGTC 1 cut(s) 1586
EaeI YGGCCR 1 cut(s) 938
Eam1104I CTCTTC 3 cut(s) 200, 255, 687
Eam1105I GACNNNNNGTC 1 cut(s) 1586
EarI CTCTTC 3 cut(s) 200, 255, 687
EciI GGCGGA 1 cut(s) 665
Eco130I CCWWGG 2 cut(s) 1053, 1187
Eco31I GGTCTC 1 cut(s) 338
Eco47I GGWCC 5 cut(s) 538, 1184, 1489, 1540, 1580
Eco57I CTGAAG 3 cut(s) 153, 189, 1406
Eco88I CYCGRG 1 cut(s) 1217
EcoO109I RGGNCCY 1 cut(s) 1489
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 5 cut(s) 540, 809, 1064, 1072, 1131
EcoT14I CCWWGG 2 cut(s) 1053, 1187
ErhI CCWWGG 2 cut(s) 1053, 1187
FaeI CATG 9 cut(s) 388, 533, 556, 826, 888, 931, 1150, 1191, 1531
FaqI GGGAC 2 cut(s) 1475, 1526
FatI CATG 9 cut(s) 384, 529, 552, 822, 884, 927, 1146, 1187, 1527
FbaI TGATCA 1 cut(s) 831
Fnu4HI GCNGC 2 cut(s) 721, 1291
FokI GGATG 7 cut(s) 608, 635, 1026, 1088, 1281, 1448, 1574
Fsp4HI GCNGC 2 cut(s) 721, 1291
FspAI RTGCGCAY 1 cut(s) 1359
FspBI CTAG 1 cut(s) 1322
FspI TGCGCA 1 cut(s) 1359
GlaI GCGC 1 cut(s) 1359
GluI GCNGC 2 cut(s) 721, 1291
GsaI CCCAGC 1 cut(s) 1226
GsuI CTGGAG 3 cut(s) 421, 563, 1154
HaeIII GGCC 1 cut(s) 940
HapII CCGG 5 cut(s) 6, 647, 791, 870, 1465
HgaI GACGC 1 cut(s) 1576
HhaI GCGC 1 cut(s) 1360
Hin1II CATG 9 cut(s) 388, 533, 556, 826, 888, 931, 1150, 1191, 1531
Hin6I GCGC 1 cut(s) 1358
HinP1I GCGC 1 cut(s) 1358
HincII GTYRAC 2 cut(s) 412, 783
HindII GTYRAC 2 cut(s) 412, 783
HindIII AAGCTT 1 cut(s) 1249
HinfI GANTC 8 cut(s) 125, 152, 176, 182, 266, 704, 761, 1098
HpaII CCGG 5 cut(s) 6, 647, 791, 870, 1465
HphI GGTGA 5 cut(s) 203, 485, 632, 1238, 1276
Hpy166II GTNNAC 4 cut(s) 194, 412, 783, 908
Hpy188III TCNNGA 6 cut(s) 156, 254, 400, 553, 961, 1528
Hpy8I GTNNAC 4 cut(s) 194, 412, 783, 908
Hpy99I CGWCG 1 cut(s) 1592
HpyAV CCTTC 8 cut(s) 182, 647, 653, 962, 1028, 1320, 1381, 1474
HpyCH4III ACNGT 3 cut(s) 31, 489, 995
HpyCH4V TGCA 4 cut(s) 60, 384, 395, 1237
HpyF10VI GCNNNNNNNGC 2 cut(s) 526, 1327
HpyF3I CTNAG 7 cut(s) 35, 389, 746, 777, 876, 1159, 1278
Hsp92II CATG 9 cut(s) 388, 533, 556, 826, 888, 931, 1150, 1191, 1531
HspAI GCGC 1 cut(s) 1358
KroI GCCGGC 1 cut(s) 790
KroNI GCCGGC 1 cut(s) 792
Ksp22I TGATCA 1 cut(s) 831
Kzo9I GATC 5 cut(s) 513, 831, 879, 1168, 1369
LmnI GCTCC 2 cut(s) 525, 1135
Lsp1109I GCAGC 2 cut(s) 732, 1277
LweI GCATC 2 cut(s) 796, 1004
MaeI CTAG 1 cut(s) 1322
MaeIII GTNAC 3 cut(s) 625, 772, 972
MalI GATC 5 cut(s) 515, 833, 881, 1170, 1371
MboI GATC 5 cut(s) 513, 831, 879, 1168, 1369
MflI RGATCY 3 cut(s) 513, 1168, 1369
MhlI GDGCHC 1 cut(s) 877
MlsI TGGCCA 1 cut(s) 940
MluCI AATT 6 cut(s) 9, 68, 948, 1030, 1200, 1419
MluNI TGGCCA 1 cut(s) 940
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 1 cut(s) 1570
Mox20I TGGCCA 1 cut(s) 940
MroNI GCCGGC 1 cut(s) 790
MroXI GAANNNNTTC 1 cut(s) 560
MscI TGGCCA 1 cut(s) 940
MseI TTAA 4 cut(s) 47, 728, 947, 1407
MslI CAYNNNNRTG 3 cut(s) 528, 827, 926
Msp20I TGGCCA 1 cut(s) 940
MspI CCGG 5 cut(s) 6, 647, 791, 870, 1465
MspR9I CCNGG 5 cut(s) 542, 811, 1066, 1074, 1133
Mva1269I GAATGC 2 cut(s) 395, 1360
MvaI CCWGG 5 cut(s) 542, 811, 1066, 1074, 1133
MwoI GCNNNNNNNGC 2 cut(s) 526, 1327
NaeI GCCGGC 1 cut(s) 792
NcoI CCATGG 1 cut(s) 1187
NdeII GATC 5 cut(s) 513, 831, 879, 1168, 1369
NgoMIV GCCGGC 1 cut(s) 790
NlaIII CATG 9 cut(s) 388, 533, 556, 826, 888, 931, 1150, 1191, 1531
NlaIV GGNNCC 4 cut(s) 486, 1040, 1491, 1542
NmuCI GTSAC 1 cut(s) 625
NsbI TGCGCA 1 cut(s) 1359
NspI RCATGY 2 cut(s) 388, 931
PaeI GCATGC 1 cut(s) 388
PaeR7I CTCGAG 1 cut(s) 1217
PagI TCATGA 2 cut(s) 552, 1527
PciI ACATGT 1 cut(s) 927
PcsI WCGNNNNNNNCGW 1 cut(s) 1102
PctI GAATGC 2 cut(s) 395, 1360
PdiI GCCGGC 1 cut(s) 792
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 7 cut(s) 125, 152, 176, 182, 266, 761, 1098
PflMI CCANNNNNTGG 2 cut(s) 716, 1577
PinAI ACCGGT 1 cut(s) 869
PkrI GCNGC 2 cut(s) 722, 1292
PleI GAGTC 1 cut(s) 698
PpsI GAGTC 1 cut(s) 698
PpuMI RGGWCCY 1 cut(s) 1489
PscI ACATGT 1 cut(s) 927
PshBI ATTAAT 1 cut(s) 947
Psp5II RGGWCCY 1 cut(s) 1489
Psp6I CCWGG 5 cut(s) 540, 809, 1064, 1072, 1131
PspFI CCCAGC 1 cut(s) 1222
PspGI CCWGG 5 cut(s) 540, 809, 1064, 1072, 1131
PspN4I GGNNCC 4 cut(s) 486, 1040, 1491, 1542
PspPI GGNCC 5 cut(s) 538, 1184, 1489, 1540, 1580
PspPPI RGGWCCY 1 cut(s) 1489
PspXI VCTCGAGB 1 cut(s) 1217
PsuI RGATCY 3 cut(s) 513, 1168, 1369
RsaI GTAC 5 cut(s) 33, 463, 932, 1145, 1460
RsaNI GTAC 5 cut(s) 32, 462, 931, 1144, 1459
RseI CAYNNNNRTG 3 cut(s) 528, 827, 926
SaqAI TTAA 4 cut(s) 47, 728, 947, 1407
SatI GCNGC 2 cut(s) 721, 1291
Sau3AI GATC 5 cut(s) 513, 831, 879, 1168, 1369
Sau96I GGNCC 5 cut(s) 538, 1184, 1489, 1540, 1580
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 5 cut(s) 542, 811, 1066, 1074, 1133
SduI GDGCHC 1 cut(s) 877
SfaNI GCATC 2 cut(s) 796, 1004
Sfr274I CTCGAG 1 cut(s) 1217
SinI GGWCC 5 cut(s) 538, 1184, 1489, 1540, 1580
SlaI CTCGAG 1 cut(s) 1217
SmiMI CAYNNNNRTG 3 cut(s) 528, 827, 926
SmlI CTYRAG 3 cut(s) 1043, 1217, 1511
SmoI CTYRAG 3 cut(s) 1043, 1217, 1511
SphI GCATGC 1 cut(s) 388
Sse9I AATT 6 cut(s) 9, 68, 948, 1030, 1200, 1419
SsiI CCGC 3 cut(s) 536, 568, 650
SspI AATATT 2 cut(s) 714, 1125
SspMI CTAG 1 cut(s) 1322
StyD4I CCNGG 5 cut(s) 540, 809, 1064, 1072, 1131
StyI CCWWGG 2 cut(s) 1053, 1187
TaaI ACNGT 3 cut(s) 31, 489, 995
TaqI TCGA 4 cut(s) 564, 764, 1112, 1218
TasI AATT 6 cut(s) 9, 68, 948, 1030, 1200, 1419
TatI WGTACW 4 cut(s) 31, 930, 1143, 1458
TfiI GAWTC 7 cut(s) 125, 152, 176, 182, 266, 761, 1098
Tru1I TTAA 4 cut(s) 47, 728, 947, 1407
Tru9I TTAA 4 cut(s) 47, 728, 947, 1407
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 2 cut(s) 720, 1290
Tsp45I GTSAC 1 cut(s) 625
TspGWI ACGGA 2 cut(s) 629, 925
TspRI CASTG 1 cut(s) 397
Van91I CCANNNNNTGG 2 cut(s) 716, 1577
VpaK11BI GGWCC 5 cut(s) 538, 1184, 1489, 1540, 1580
VspI ATTAAT 1 cut(s) 947
XapI RAATTY 2 cut(s) 9, 68
XceI RCATGY 2 cut(s) 388, 931
XcmI CCANNNNNNNNNTGG 1 cut(s) 1306
XhoI CTCGAG 1 cut(s) 1217
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 1 cut(s) 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.