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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 3 cut(s) | 332, 740, 881 |
| AccI | GTMKAC | 1 cut(s) | 791 |
| AciI | CCGC | 1 cut(s) | 152 |
| AclI | AACGTT | 1 cut(s) | 812 |
| AclWI | GGATC | 1 cut(s) | 124 |
| AcoI | YGGCCR | 1 cut(s) | 554 |
| AcuI | CTGAAG | 2 cut(s) | 252, 460 |
| AfaI | GTAC | 2 cut(s) | 79, 548 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 269, 332, 740, 752, 881 |
| AflIII | ACRYGT | 1 cut(s) | 543 |
| AgsI | TTSAA | 2 cut(s) | 181, 283 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 749 |
| AjnI | CCWGG | 2 cut(s) | 156, 708 |
| AluBI | AGCT | 4 cut(s) | 136, 385, 491, 673 |
| AluI | AGCT | 4 cut(s) | 136, 385, 491, 673 |
| Alw21I | GWGCWC | 1 cut(s) | 493 |
| AlwI | GGATC | 1 cut(s) | 124 |
| AoxI | GGCC | 2 cut(s) | 554, 702 |
| ApeKI | GCWGC | 2 cut(s) | 336, 773 |
| AspS9I | GGNCC | 3 cut(s) | 154, 703, 743 |
| AsuHPI | GGTGA | 3 cut(s) | 101, 248, 313 |
| AvaII | GGWCC | 2 cut(s) | 154, 743 |
| BalI | TGGCCA | 1 cut(s) | 556 |
| BanII | GRGCYC | 1 cut(s) | 493 |
| BbsI | GAAGAC | 2 cut(s) | 324, 671 |
| Bbv12I | GWGCWC | 1 cut(s) | 493 |
| BbvI | GCAGC | 2 cut(s) | 348, 785 |
| BccI | CCATC | 3 cut(s) | 307, 574, 622 |
| BceAI | ACGGC | 2 cut(s) | 500, 840 |
| BciT130I | CCWGG | 2 cut(s) | 158, 710 |
| BclI | TGATCA | 1 cut(s) | 447 |
| BfaI | CTAG | 1 cut(s) | 50 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 109 |
| BisI | GCNGC | 2 cut(s) | 337, 774 |
| BlsI | GCNGC | 2 cut(s) | 338, 775 |
| Bme1390I | CCNGG | 2 cut(s) | 158, 710 |
| Bme18I | GGWCC | 2 cut(s) | 154, 743 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 749 |
| BmgT120I | GGNCC | 3 cut(s) | 154, 703, 743 |
| BmiI | GGNNCC | 2 cut(s) | 656, 705 |
| BmrFI | CCNGG | 2 cut(s) | 158, 710 |
| BmsI | GCATC | 3 cut(s) | 19, 339, 620 |
| BpiI | GAAGAC | 2 cut(s) | 324, 671 |
| BpmI | CTGGAG | 2 cut(s) | 37, 179 |
| BpuEI | CTTGAG | 2 cut(s) | 680, 695 |
| BsaAI | YACGTR | 1 cut(s) | 453 |
| BsaBI | GATNNNNATC | 1 cut(s) | 729 |
| BsaJI | CCNNGG | 1 cut(s) | 708 |
| BsaWI | WCCGGW | 2 cut(s) | 485, 865 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 269, 332, 740, 752, 881 |
| Bse118I | RCCGGY | 1 cut(s) | 406 |
| Bse1I | ACTGG | 3 cut(s) | 557, 656, 777 |
| Bse3DI | GCAATG | 2 cut(s) | 819, 831 |
| Bse8I | GATNNNNATC | 1 cut(s) | 729 |
| BseBI | CCWGG | 2 cut(s) | 158, 710 |
| BseDI | CCNNGG | 1 cut(s) | 708 |
| BseGI | GGATG | 5 cut(s) | 217, 244, 635, 718, 730 |
| BseJI | GATNNNNATC | 1 cut(s) | 729 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 269, 332, 740, 752, 881 |
| BseMI | GCAATG | 2 cut(s) | 819, 831 |
| BseMII | CTCAG | 5 cut(s) | 19, 376, 384, 506, 707 |
| BseNI | ACTGG | 3 cut(s) | 557, 656, 777 |
| BseRI | GAGGAG | 1 cut(s) | 248 |
| BseXI | GCAGC | 2 cut(s) | 348, 785 |
| BshFI | GGCC | 2 cut(s) | 556, 704 |
| BsiHKAI | GWGCWC | 1 cut(s) | 493 |
| BsiSI | CCGG | 4 cut(s) | 263, 407, 486, 866 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 269, 332, 740, 752, 881 |
| BsnI | GGCC | 2 cut(s) | 556, 704 |
| Bsp1286I | GDGCHC | 1 cut(s) | 493 |
| Bsp1407I | TGTACA | 1 cut(s) | 546 |
| Bsp143I | GATC | 3 cut(s) | 96, 129, 447 |
| BspACI | CCGC | 1 cut(s) | 152 |
| BspANI | GGCC | 2 cut(s) | 556, 704 |
| BspCNI | CTCAG | 5 cut(s) | 18, 375, 385, 505, 706 |
| BspHI | TCATGA | 1 cut(s) | 168 |
| BspLI | GGNNCC | 2 cut(s) | 656, 705 |
| BspPI | GGATC | 1 cut(s) | 124 |
| BsrDI | GCAATG | 2 cut(s) | 819, 831 |
| BsrFI | RCCGGY | 1 cut(s) | 406 |
| BsrGI | TGTACA | 1 cut(s) | 546 |
| BsrI | ACTGG | 3 cut(s) | 557, 656, 777 |
| BssAI | RCCGGY | 1 cut(s) | 406 |
| BssECI | CCNNGG | 1 cut(s) | 708 |
| BssMI | GATC | 3 cut(s) | 96, 129, 447 |
| Bst2UI | CCWGG | 2 cut(s) | 158, 710 |
| Bst4CI | ACNGT | 1 cut(s) | 802 |
| Bst6I | CTCTTC | 1 cut(s) | 303 |
| BstAUI | TGTACA | 1 cut(s) | 546 |
| BstBAI | YACGTR | 1 cut(s) | 453 |
| BstC8I | GCNNGC | 1 cut(s) | 354 |
| BstDEI | CTNAG | 5 cut(s) | 5, 362, 393, 492, 693 |
| BstF5I | GGATG | 5 cut(s) | 217, 244, 635, 718, 730 |
| BstKTI | GATC | 3 cut(s) | 99, 132, 450 |
| BstMBI | GATC | 3 cut(s) | 96, 129, 447 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 109, 142 |
| BstNI | CCWGG | 2 cut(s) | 158, 710 |
| BstSCI | CCNGG | 2 cut(s) | 156, 708 |
| BstV1I | GCAGC | 2 cut(s) | 348, 785 |
| BstV2I | GAAGAC | 2 cut(s) | 324, 671 |
| BstX2I | RGATCY | 1 cut(s) | 129 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 826 |
| BstYI | RGATCY | 1 cut(s) | 129 |
| BsuRI | GGCC | 2 cut(s) | 556, 704 |
| BtsCI | GGATG | 5 cut(s) | 217, 244, 635, 718, 730 |
| BtsI | GCAGTG | 1 cut(s) | 444 |
| BtsIMutI | CAGTG | 3 cut(s) | 444, 784, 798 |
| Cac8I | GCNNGC | 1 cut(s) | 354 |
| CciI | TCATGA | 1 cut(s) | 168 |
| Cfr10I | RCCGGY | 1 cut(s) | 406 |
| Cfr13I | GGNCC | 3 cut(s) | 154, 703, 743 |
| CseI | GACGC | 1 cut(s) | 739 |
| Csp6I | GTAC | 2 cut(s) | 78, 547 |
| CviAII | CATG | 3 cut(s) | 146, 169, 501 |
| CviQI | GTAC | 2 cut(s) | 78, 547 |
| DdeI | CTNAG | 5 cut(s) | 5, 362, 393, 492, 693 |
| DpnI | GATC | 3 cut(s) | 98, 131, 449 |
| DpnII | GATC | 3 cut(s) | 96, 129, 447 |
| DraI | TTTAAA | 1 cut(s) | 345 |
| DriI | GACNNNNNGTC | 1 cut(s) | 749 |
| EaeI | YGGCCR | 1 cut(s) | 554 |
| Eam1104I | CTCTTC | 1 cut(s) | 303 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 749 |
| EarI | CTCTTC | 1 cut(s) | 303 |
| Ecl136II | GAGCTC | 1 cut(s) | 491 |
| Eco24I | GRGCYC | 1 cut(s) | 493 |
| Eco47I | GGWCC | 2 cut(s) | 154, 743 |
| Eco53kI | GAGCTC | 1 cut(s) | 491 |
| Eco57I | CTGAAG | 2 cut(s) | 252, 460 |
| EcoICRI | GAGCTC | 1 cut(s) | 491 |
| EcoRII | CCWGG | 2 cut(s) | 156, 708 |
| EcoT38I | GRGCYC | 1 cut(s) | 493 |
| FaeI | CATG | 3 cut(s) | 149, 172, 504 |
| FaiI | YATR | 9 cut(s) | 147, 170, 221, 502, 509, 520, 539, 600, 771 |
| FatI | CATG | 3 cut(s) | 145, 168, 500 |
| FbaI | TGATCA | 1 cut(s) | 447 |
| FblI | GTMKAC | 1 cut(s) | 791 |
| Fnu4HI | GCNGC | 2 cut(s) | 337, 774 |
| FokI | GGATG | 5 cut(s) | 224, 251, 642, 725, 737 |
| FriOI | GRGCYC | 1 cut(s) | 493 |
| Fsp4HI | GCNGC | 2 cut(s) | 337, 774 |
| FspBI | CTAG | 1 cut(s) | 50 |
| GluI | GCNGC | 2 cut(s) | 337, 774 |
| GsuI | CTGGAG | 2 cut(s) | 37, 179 |
| HaeIII | GGCC | 2 cut(s) | 556, 704 |
| HapII | CCGG | 4 cut(s) | 263, 407, 486, 866 |
| HgaI | GACGC | 1 cut(s) | 739 |
| Hin1II | CATG | 3 cut(s) | 149, 172, 504 |
| HincII | GTYRAC | 2 cut(s) | 399, 792 |
| HindII | GTYRAC | 2 cut(s) | 399, 792 |
| HindIII | AAGCTT | 1 cut(s) | 671 |
| HinfI | GANTC | 4 cut(s) | 320, 377, 565, 886 |
| HpaII | CCGG | 4 cut(s) | 263, 407, 486, 866 |
| HphI | GGTGA | 3 cut(s) | 101, 248, 313 |
| Hpy166II | GTNNAC | 6 cut(s) | 289, 399, 524, 547, 792, 860 |
| Hpy188I | TCNGA | 5 cut(s) | 365, 417, 495, 696, 755 |
| Hpy188III | TCNNGA | 4 cut(s) | 16, 169, 270, 577 |
| Hpy8I | GTNNAC | 6 cut(s) | 289, 399, 524, 547, 792, 860 |
| Hpy99I | CGWCG | 2 cut(s) | 755, 796 |
| HpyAV | CCTTC | 3 cut(s) | 22, 269, 578 |
| HpyCH4III | ACNGT | 1 cut(s) | 802 |
| HpyCH4IV | ACGT | 4 cut(s) | 452, 543, 812, 880 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 352, 773, 824 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 109, 142 |
| HpyF3I | CTNAG | 5 cut(s) | 5, 362, 393, 492, 693 |
| HpySE526I | ACGT | 4 cut(s) | 452, 543, 812, 880 |
| Hsp92II | CATG | 3 cut(s) | 149, 172, 504 |
| Ksp22I | TGATCA | 1 cut(s) | 447 |
| Kzo9I | GATC | 3 cut(s) | 96, 129, 447 |
| LmnI | GCTCC | 2 cut(s) | 488, 868 |
| Lsp1109I | GCAGC | 2 cut(s) | 348, 785 |
| LweI | GCATC | 3 cut(s) | 19, 339, 620 |
| MaeI | CTAG | 1 cut(s) | 50 |
| MaeII | ACGT | 4 cut(s) | 452, 543, 812, 880 |
| MaeIII | GTNAC | 2 cut(s) | 388, 802 |
| MalI | GATC | 3 cut(s) | 98, 131, 449 |
| MboI | GATC | 3 cut(s) | 96, 129, 447 |
| MboII | GAAGA | 6 cut(s) | 320, 329, 442, 463, 466, 676 |
| MflI | RGATCY | 1 cut(s) | 129 |
| MhlI | GDGCHC | 1 cut(s) | 493 |
| MlsI | TGGCCA | 1 cut(s) | 556 |
| MluCI | AATT | 1 cut(s) | 830 |
| MluNI | TGGCCA | 1 cut(s) | 556 |
| MlyI | GAGTC | 1 cut(s) | 314 |
| MmeI | TCCRAC | 1 cut(s) | 733 |
| MnlI | CCTC | 9 cut(s) | 165, 226, 229, 288, 297, 371, 597, 715, 751 |
| Mox20I | TGGCCA | 1 cut(s) | 556 |
| MscI | TGGCCA | 1 cut(s) | 556 |
| MseI | TTAA | 2 cut(s) | 71, 344 |
| MslI | CAYNNNNRTG | 2 cut(s) | 542, 824 |
| Msp20I | TGGCCA | 1 cut(s) | 556 |
| MspI | CCGG | 4 cut(s) | 263, 407, 486, 866 |
| MspR9I | CCNGG | 2 cut(s) | 158, 710 |
| MvaI | CCWGG | 2 cut(s) | 158, 710 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 109, 142 |
| NdeII | GATC | 3 cut(s) | 96, 129, 447 |
| NlaIII | CATG | 3 cut(s) | 149, 172, 504 |
| NlaIV | GGNNCC | 2 cut(s) | 656, 705 |
| NmuCI | GTSAC | 1 cut(s) | 802 |
| PagI | TCATGA | 1 cut(s) | 168 |
| PfeI | GAWTC | 3 cut(s) | 377, 565, 886 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 332, 740, 881 |
| PkrI | GCNGC | 2 cut(s) | 338, 775 |
| PleI | GAGTC | 1 cut(s) | 314 |
| PpsI | GAGTC | 1 cut(s) | 314 |
| Ppu21I | YACGTR | 1 cut(s) | 453 |
| Psp124BI | GAGCTC | 1 cut(s) | 493 |
| Psp1406I | AACGTT | 1 cut(s) | 812 |
| Psp6I | CCWGG | 2 cut(s) | 156, 708 |
| PspGI | CCWGG | 2 cut(s) | 156, 708 |
| PspN4I | GGNNCC | 2 cut(s) | 656, 705 |
| PspPI | GGNCC | 3 cut(s) | 154, 703, 743 |
| PsuI | RGATCY | 1 cut(s) | 129 |
| RsaI | GTAC | 2 cut(s) | 79, 548 |
| RsaNI | GTAC | 2 cut(s) | 78, 547 |
| RseI | CAYNNNNRTG | 2 cut(s) | 542, 824 |
| SacI | GAGCTC | 1 cut(s) | 493 |
| SalI | GTCGAC | 1 cut(s) | 790 |
| SaqAI | TTAA | 2 cut(s) | 71, 344 |
| SatI | GCNGC | 2 cut(s) | 337, 774 |
| Sau3AI | GATC | 3 cut(s) | 96, 129, 447 |
| Sau96I | GGNCC | 3 cut(s) | 154, 703, 743 |
| SchI | GAGTC | 1 cut(s) | 314 |
| ScrFI | CCNGG | 2 cut(s) | 158, 710 |
| SduI | GDGCHC | 1 cut(s) | 493 |
| SfaNI | GCATC | 3 cut(s) | 19, 339, 620 |
| SinI | GGWCC | 2 cut(s) | 154, 743 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 542, 824 |
| SmlI | CTYRAG | 2 cut(s) | 659, 674 |
| SmoI | CTYRAG | 2 cut(s) | 659, 674 |
| Sse9I | AATT | 1 cut(s) | 830 |
| SsiI | CCGC | 1 cut(s) | 152 |
| SspI | AATATT | 1 cut(s) | 330 |
| SspMI | CTAG | 1 cut(s) | 50 |
| SstI | GAGCTC | 1 cut(s) | 493 |
| StyD4I | CCNGG | 2 cut(s) | 156, 708 |
| TaaI | ACNGT | 1 cut(s) | 802 |
| TaiI | ACGT | 4 cut(s) | 455, 546, 815, 883 |
| TaqI | TCGA | 4 cut(s) | 99, 380, 481, 791 |
| TasI | AATT | 1 cut(s) | 830 |
| TatI | WGTACW | 1 cut(s) | 546 |
| TfiI | GAWTC | 3 cut(s) | 377, 565, 886 |
| Tru1I | TTAA | 2 cut(s) | 71, 344 |
| Tru9I | TTAA | 2 cut(s) | 71, 344 |
| TscAI | CASTG | 3 cut(s) | 444, 784, 805 |
| TseFI | GTSAC | 1 cut(s) | 802 |
| TseI | GCWGC | 2 cut(s) | 336, 773 |
| Tsp45I | GTSAC | 1 cut(s) | 802 |
| TspDTI | ATGAA | 5 cut(s) | 162, 638, 729, 741, 864 |
| TspGWI | ACGGA | 3 cut(s) | 245, 541, 809 |
| TspRI | CASTG | 3 cut(s) | 444, 784, 805 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 332, 740, 881 |
| VpaK11BI | GGWCC | 2 cut(s) | 154, 743 |
| XmiI | GTMKAC | 1 cut(s) | 791 |
| XspI | CTAG | 1 cut(s) | 50 |