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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 131 |
| AclWI | GGATC | 3 cut(s) | 169, 221, 234 |
| AfaI | GTAC | 1 cut(s) | 402 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 145, 221, 383 |
| AgsI | TTSAA | 2 cut(s) | 371, 444 |
| AjnI | CCWGG | 1 cut(s) | 157 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 35, 67 |
| AluBI | AGCT | 2 cut(s) | 359, 483 |
| AluI | AGCT | 2 cut(s) | 359, 483 |
| AlwI | GGATC | 3 cut(s) | 169, 221, 234 |
| ApeKI | GCWGC | 3 cut(s) | 97, 356, 480 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 489 |
| AspS9I | GGNCC | 1 cut(s) | 409 |
| AvaII | GGWCC | 1 cut(s) | 409 |
| AxyI | CCTNAGG | 1 cut(s) | 378 |
| BamHI | GGATCC | 1 cut(s) | 226 |
| BbvI | GCAGC | 3 cut(s) | 109, 368, 492 |
| BccI | CCATC | 3 cut(s) | 112, 304, 412 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 387, 421 |
| BciT130I | CCWGG | 1 cut(s) | 159 |
| BciVI | GTATCC | 1 cut(s) | 277 |
| BfmI | CTRYAG | 1 cut(s) | 113 |
| BfuI | GTATCC | 1 cut(s) | 277 |
| BisI | GCNGC | 3 cut(s) | 98, 357, 481 |
| BlsI | GCNGC | 3 cut(s) | 99, 358, 482 |
| Bme1390I | CCNGG | 1 cut(s) | 159 |
| Bme18I | GGWCC | 1 cut(s) | 409 |
| BmgT120I | GGNCC | 1 cut(s) | 409 |
| BmiI | GGNNCC | 3 cut(s) | 156, 228, 411 |
| BmrFI | CCNGG | 1 cut(s) | 159 |
| BmsI | GCATC | 2 cut(s) | 226, 286 |
| BsaJI | CCNNGG | 2 cut(s) | 215, 414 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 145, 221, 383 |
| Bse1I | ACTGG | 3 cut(s) | 70, 200, 354 |
| Bse21I | CCTNAGG | 1 cut(s) | 378 |
| BseBI | CCWGG | 1 cut(s) | 159 |
| BseDI | CCNNGG | 2 cut(s) | 215, 414 |
| BseGI | GGATG | 1 cut(s) | 301 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 145, 221, 383 |
| BseMII | CTCAG | 2 cut(s) | 156, 369 |
| BseNI | ACTGG | 3 cut(s) | 70, 200, 354 |
| BseRI | GAGGAG | 1 cut(s) | 182 |
| BseXI | GCAGC | 3 cut(s) | 109, 368, 492 |
| Bsh1285I | CGRYCG | 1 cut(s) | 135 |
| BsiEI | CGRYCG | 1 cut(s) | 135 |
| BslFI | GGGAC | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 145, 221, 383 |
| BsmFI | GGGAC | 1 cut(s) | 395 |
| BsmI | GAATGC | 1 cut(s) | 439 |
| Bsp143I | GATC | 4 cut(s) | 142, 161, 226, 328 |
| BspCNI | CTCAG | 2 cut(s) | 157, 370 |
| BspLI | GGNNCC | 3 cut(s) | 156, 228, 411 |
| BspPI | GGATC | 3 cut(s) | 169, 221, 234 |
| BsrI | ACTGG | 3 cut(s) | 70, 200, 354 |
| BssECI | CCNNGG | 2 cut(s) | 215, 414 |
| BssMI | GATC | 4 cut(s) | 142, 161, 226, 328 |
| BssT1I | CCWWGG | 2 cut(s) | 215, 414 |
| Bst2UI | CCWGG | 1 cut(s) | 159 |
| Bst4CI | ACNGT | 2 cut(s) | 367, 430 |
| Bst6I | CTCTTC | 1 cut(s) | 261 |
| BstDEI | CTNAG | 3 cut(s) | 165, 360, 378 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 381 |
| BstF5I | GGATG | 1 cut(s) | 301 |
| BstKTI | GATC | 4 cut(s) | 145, 164, 229, 331 |
| BstMBI | GATC | 4 cut(s) | 142, 161, 226, 328 |
| BstMCI | CGRYCG | 1 cut(s) | 135 |
| BstNI | CCWGG | 1 cut(s) | 159 |
| BstNSI | RCATGY | 1 cut(s) | 439 |
| BstSCI | CCNGG | 1 cut(s) | 157 |
| BstSFI | CTRYAG | 1 cut(s) | 113 |
| BstV1I | GCAGC | 3 cut(s) | 109, 368, 492 |
| BstX2I | RGATCY | 2 cut(s) | 161, 226 |
| BstYI | RGATCY | 2 cut(s) | 161, 226 |
| Bsu36I | CCTNAGG | 1 cut(s) | 378 |
| BsuI | GTATCC | 1 cut(s) | 277 |
| BtsCI | GGATG | 1 cut(s) | 301 |
| Cfr13I | GGNCC | 1 cut(s) | 409 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 1 cut(s) | 401 |
| CviAII | CATG | 1 cut(s) | 436 |
| CviJI | RGCY | 3 cut(s) | 359, 376, 483 |
| CviKI_1 | RGCY | 3 cut(s) | 359, 376, 483 |
| CviQI | GTAC | 1 cut(s) | 401 |
| DdeI | CTNAG | 3 cut(s) | 165, 360, 378 |
| DpnI | GATC | 4 cut(s) | 144, 163, 228, 330 |
| DpnII | GATC | 4 cut(s) | 142, 161, 226, 328 |
| Eam1104I | CTCTTC | 1 cut(s) | 261 |
| EarI | CTCTTC | 1 cut(s) | 261 |
| Eco130I | CCWWGG | 2 cut(s) | 215, 414 |
| Eco47I | GGWCC | 1 cut(s) | 409 |
| Eco81I | CCTNAGG | 1 cut(s) | 378 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 381 |
| EcoRII | CCWGG | 1 cut(s) | 157 |
| EcoT14I | CCWWGG | 2 cut(s) | 215, 414 |
| EcoT22I | ATGCAT | 1 cut(s) | 441 |
| ErhI | CCWWGG | 2 cut(s) | 215, 414 |
| FaeI | CATG | 1 cut(s) | 439 |
| FaiI | YATR | 5 cut(s) | 32, 41, 186, 293, 437 |
| FaqI | GGGAC | 1 cut(s) | 395 |
| FatI | CATG | 1 cut(s) | 435 |
| FblI | GTMKAC | 1 cut(s) | 131 |
| Fnu4HI | GCNGC | 3 cut(s) | 98, 357, 481 |
| FokI | GGATG | 1 cut(s) | 308 |
| Fsp4HI | GCNGC | 3 cut(s) | 98, 357, 481 |
| GluI | GCNGC | 3 cut(s) | 98, 357, 481 |
| HgaI | GACGC | 1 cut(s) | 197 |
| Hin1II | CATG | 1 cut(s) | 439 |
| HincII | GTYRAC | 3 cut(s) | 132, 205, 433 |
| HindII | GTYRAC | 3 cut(s) | 132, 205, 433 |
| HinfI | GANTC | 1 cut(s) | 314 |
| Hpy166II | GTNNAC | 3 cut(s) | 132, 205, 433 |
| Hpy188I | TCNGA | 3 cut(s) | 166, 309, 319 |
| Hpy8I | GTNNAC | 3 cut(s) | 132, 205, 433 |
| Hpy99I | CGWCG | 1 cut(s) | 504 |
| HpyAV | CCTTC | 1 cut(s) | 482 |
| HpyCH4III | ACNGT | 2 cut(s) | 367, 430 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 19, 299, 439 |
| HpyF3I | CTNAG | 3 cut(s) | 165, 360, 378 |
| Hsp92II | CATG | 1 cut(s) | 439 |
| Kzo9I | GATC | 4 cut(s) | 142, 161, 226, 328 |
| Lsp1109I | GCAGC | 3 cut(s) | 109, 368, 492 |
| LweI | GCATC | 2 cut(s) | 226, 286 |
| MalI | GATC | 4 cut(s) | 144, 163, 228, 330 |
| MboI | GATC | 4 cut(s) | 142, 161, 226, 328 |
| MboII | GAAGA | 5 cut(s) | 55, 221, 278, 332, 433 |
| MfeI | CAATTG | 1 cut(s) | 231 |
| MflI | RGATCY | 2 cut(s) | 161, 226 |
| MluCI | AATT | 3 cut(s) | 47, 231, 333 |
| MnlI | CCTC | 6 cut(s) | 144, 160, 262, 274, 373, 444 |
| Mph1103I | ATGCAT | 1 cut(s) | 441 |
| MspA1I | CMGCKG | 1 cut(s) | 483 |
| MspR9I | CCNGG | 1 cut(s) | 159 |
| MunI | CAATTG | 1 cut(s) | 231 |
| Mva1269I | GAATGC | 1 cut(s) | 439 |
| MvaI | CCWGG | 1 cut(s) | 159 |
| NdeII | GATC | 4 cut(s) | 142, 161, 226, 328 |
| NlaIII | CATG | 1 cut(s) | 439 |
| NlaIV | GGNNCC | 3 cut(s) | 156, 228, 411 |
| NsiI | ATGCAT | 1 cut(s) | 441 |
| NspI | RCATGY | 1 cut(s) | 439 |
| PctI | GAATGC | 1 cut(s) | 439 |
| PfeI | GAWTC | 1 cut(s) | 314 |
| PkrI | GCNGC | 3 cut(s) | 99, 358, 482 |
| Psp6I | CCWGG | 1 cut(s) | 157 |
| PspGI | CCWGG | 1 cut(s) | 157 |
| PspN4I | GGNNCC | 3 cut(s) | 156, 228, 411 |
| PspPI | GGNCC | 1 cut(s) | 409 |
| PsuI | RGATCY | 2 cut(s) | 161, 226 |
| PvuII | CAGCTG | 1 cut(s) | 483 |
| RsaI | GTAC | 1 cut(s) | 402 |
| RsaNI | GTAC | 1 cut(s) | 401 |
| SalI | GTCGAC | 1 cut(s) | 130 |
| SatI | GCNGC | 3 cut(s) | 98, 357, 481 |
| Sau3AI | GATC | 4 cut(s) | 142, 161, 226, 328 |
| Sau96I | GGNCC | 1 cut(s) | 409 |
| ScrFI | CCNGG | 1 cut(s) | 159 |
| SetI | ASST | 6 cut(s) | 79, 106, 160, 292, 361, 485 |
| SfaNI | GCATC | 2 cut(s) | 226, 286 |
| SfcI | CTRYAG | 1 cut(s) | 113 |
| SinI | GGWCC | 1 cut(s) | 409 |
| Sse9I | AATT | 3 cut(s) | 47, 231, 333 |
| StyD4I | CCNGG | 1 cut(s) | 157 |
| StyI | CCWWGG | 2 cut(s) | 215, 414 |
| TaaI | ACNGT | 2 cut(s) | 367, 430 |
| TaqI | TCGA | 2 cut(s) | 131, 341 |
| TaqII | GACCGA | 2 cut(s) | 149, 397 |
| TasI | AATT | 3 cut(s) | 47, 231, 333 |
| TfiI | GAWTC | 1 cut(s) | 314 |
| TseI | GCWGC | 3 cut(s) | 97, 356, 480 |
| TspDTI | ATGAA | 2 cut(s) | 56, 123 |
| VpaK11BI | GGWCC | 1 cut(s) | 409 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 381 |
| XceI | RCATGY | 1 cut(s) | 439 |
| XmiI | GTMKAC | 1 cut(s) | 131 |
| Zsp2I | ATGCAT | 1 cut(s) | 441 |