RLG00000033855

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
33151845 .. 33152706
862 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033855

Sequence Viewer

Length: 594 bp
ATGGATGAGCAAATGAAGAAACTCTCGGAAGCAAATGAAGGACTTGCGAACCACATTGGGGTGCTTTGGAAAAAAGTTACTGTTGCTGATGAGAAGATTGAGAGTATGGAGAAGAAAATGACTGAGGAAACTGACCCGAAAAGTAGTGAGCAGCAAGATAATCAACTACAGATGGTGCTGGTGTCGACCAACCAAGATCAGGGGAGGGAACCTAGATCTGAGGGGAACCCAAAAAAATATGACGCTCAAACACCAGTCAACGAAGAACCAAGGGCAGTGGATCCAGTTGATGCGTTTCCACTATCTTACAAGAGACCAGAAGAGGAAGTAAAGGTAGCTGTGAAGGACAAGGACGGCAACTTTGAGTATGACACACCTGAGATCTTGAAGACTTATGGAAAGAGAAGAAAGACTGCTGCACAGGAAAAGAAAGAAGAACCGAAGCCGGCAACCAAACTGCAGAAAGGGAAACAAGTGCAGCACCCAATGCAAAGAAAAGATGTGAATTGTCAGAAGTACACATGGAAAACATTAAAGCCTGAAGTAGCAAGACACTACCAGCAATTCTTTGAGATGGTGGATGACAATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.87

Weight (kDa)

6.04

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 185
AclWI GGATC 2 cut(s) 275, 288
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 2 cut(s) 58, 199
AgsI TTSAA 1 cut(s) 388
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 2 cut(s) 275, 288
ApeKI GCWGC 3 cut(s) 151, 416, 478
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
BamHI GGATCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 3 cut(s) 163, 403, 490
BccI CCATC 2 cut(s) 166, 568
BceAI ACGGC 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 2 cut(s) 167, 458
BglII AGATCT 2 cut(s) 215, 381
BisI GCNGC 3 cut(s) 152, 417, 479
BlsI GCNGC 3 cut(s) 153, 418, 480
BmiI GGNNCC 3 cut(s) 210, 227, 282
BmsI GCATC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 395
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 199
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 2 cut(s) 254, 284
BseDI CCNNGG 1 cut(s) 269
BseGI GGATG 2 cut(s) 10, 586
BseLI CCNNNNNNNGG 2 cut(s) 58, 199
BseMII CTCAG 3 cut(s) 114, 210, 369
BseNI ACTGG 2 cut(s) 254, 284
BseXI GCAGC 3 cut(s) 163, 403, 490
BsgI GTGCAG 2 cut(s) 402, 497
BsiSI CCGG 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 58, 199
BsmAI GTCTC 1 cut(s) 307
Bso31I GGTCTC 1 cut(s) 307
Bsp143I GATC 4 cut(s) 196, 215, 280, 381
BspCNI CTCAG 3 cut(s) 115, 211, 370
BspLI GGNNCC 3 cut(s) 210, 227, 282
BspMAI CTGCAG 1 cut(s) 462
BspPI GGATC 2 cut(s) 275, 288
BspTNI GGTCTC 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 2 cut(s) 254, 284
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 4 cut(s) 196, 215, 280, 381
BssT1I CCWWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 315
BstAPI GCANNNNNTGC 1 cut(s) 487
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 3 cut(s) 123, 219, 378
BstF5I GGATG 2 cut(s) 10, 586
BstKTI GATC 4 cut(s) 199, 218, 283, 384
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 4 cut(s) 196, 215, 280, 381
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstSFI CTRYAG 2 cut(s) 167, 458
BstV1I GCAGC 3 cut(s) 163, 403, 490
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 3 cut(s) 215, 280, 381
BstYI RGATCY 3 cut(s) 215, 280, 381
BtsCI GGATG 2 cut(s) 10, 586
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 447
Cfr10I RCCGGY 1 cut(s) 445
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 517
CspCI CAANNNNNGTGG 2 cut(s) 258, 293
CviAII CATG 2 cut(s) 522, 591
CviJI RGCY 3 cut(s) 338, 445, 538
CviKI_1 RGCY 3 cut(s) 338, 445, 538
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 3 cut(s) 123, 219, 378
DpnI GATC 4 cut(s) 198, 217, 282, 383
DpnII GATC 4 cut(s) 196, 215, 280, 381
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 561
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 2 cut(s) 525, 594
FaiI YATR 6 cut(s) 107, 240, 369, 396, 523, 592
FatI CATG 2 cut(s) 521, 590
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 3 cut(s) 152, 417, 479
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 152, 417, 479
FspBI CTAG 1 cut(s) 213
GluI GCNGC 3 cut(s) 152, 417, 479
HapII CCGG 1 cut(s) 446
HgaI GACGC 1 cut(s) 251
Hin1II CATG 2 cut(s) 525, 594
HincII GTYRAC 2 cut(s) 186, 259
HindII GTYRAC 2 cut(s) 186, 259
HpaII CCGG 1 cut(s) 446
Hpy166II GTNNAC 3 cut(s) 186, 259, 519
Hpy188I TCNGA 3 cut(s) 28, 220, 513
Hpy188III TCNNGA 1 cut(s) 385
Hpy8I GTNNAC 3 cut(s) 186, 259, 519
HpyAV CCTTC 2 cut(s) 32, 337
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 4 cut(s) 419, 460, 478, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpyF3I CTNAG 3 cut(s) 123, 219, 378
Hsp92II CATG 2 cut(s) 525, 594
KroI GCCGGC 1 cut(s) 445
KroNI GCCGGC 1 cut(s) 447
Kzo9I GATC 4 cut(s) 196, 215, 280, 381
Lsp1109I GCAGC 3 cut(s) 163, 403, 490
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 76
MalI GATC 4 cut(s) 198, 217, 282, 383
MboI GATC 4 cut(s) 196, 215, 280, 381
MboII GAAGA 8 cut(s) 28, 106, 124, 275, 332, 400, 417, 446
MflI RGATCY 3 cut(s) 215, 280, 381
MluCI AATT 2 cut(s) 505, 563
MnlI CCTC 4 cut(s) 118, 198, 214, 316
MroNI GCCGGC 1 cut(s) 445
MseI TTAA 1 cut(s) 533
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 1 cut(s) 446
MwoI GCNNNNNNNGC 1 cut(s) 487
NaeI GCCGGC 1 cut(s) 447
NdeII GATC 4 cut(s) 196, 215, 280, 381
NgoMIV GCCGGC 1 cut(s) 445
NlaIII CATG 2 cut(s) 525, 594
NlaIV GGNNCC 3 cut(s) 210, 227, 282
PdiI GCCGGC 1 cut(s) 447
PkrI GCNGC 3 cut(s) 153, 418, 480
PspN4I GGNNCC 3 cut(s) 210, 227, 282
PstI CTGCAG 1 cut(s) 462
PsuI RGATCY 3 cut(s) 215, 280, 381
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
RseI CAYNNNNRTG 1 cut(s) 59
SalI GTCGAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 3 cut(s) 152, 417, 479
Sau3AI GATC 4 cut(s) 196, 215, 280, 381
SetI ASST 4 cut(s) 214, 336, 340, 379
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 2 cut(s) 167, 458
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 2 cut(s) 505, 563
SspMI CTAG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 185
TasI AATT 2 cut(s) 505, 563
TatI WGTACW 1 cut(s) 516
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 1 cut(s) 282
TseI GCWGC 3 cut(s) 151, 416, 478
TspDTI ATGAA 2 cut(s) 29, 51
TspRI CASTG 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 185
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.