Rw4G020080
MYB Family

Protein ALWAYS EARLY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000060
Physical Location & Seq
Reverse (-)
43733079 .. 43747341
14263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G020080.1

Sequence Viewer

Length: 2295 bp
ATGGCCCCGGTAAGGAAAACAAAGGGTGTGAATAAGAGGTTTCCTTATATCAACAAGGTTGCTTCTAACAAATTTGGAGATAATGCTAACAAGAACAAGCAGAAAAAGAGAAAGTTGTCTGACATGTTAGGGCCTCAATGGACCACTGAAGAGCTAAAGCACTTTTATGAAGGATATCGCAAGTATGGGAAAGACTGGATGAAGGTTGCTTCAGTAGTACGTCACCGATCTTTGGAGAATGTAGAGGCCCTTTACACTATGAATAGGGCCTACTTATCTCTTCCCGAGGGCGCTGCTTCTGTGATTGGCCTAACAGCAATGATGTGTGACTATTACTCTATGCTGGAAAGAAGTGACAGTGAACAAAACTGCATTGACAATGCAGGAACCCCCAGAAAGCCTCAAAAGCTTGCAAGAGGGAAATTACGGAATGACGCCTCAAAAGGATTGGAAGGACATATTCTAGATATTTCTCAGTCCCGTTCAATTGCATCAGATGGCTGCTTGTCACTGCTGAAAAATAGGCACACTGATGAAGACTCTTCCTTTGATGCGCTACTTACTCTGGCAGATCTGTCCTTGAGGATGCCTGAAGCAACTGCTGAAATGGAATCATCTGCACTTGTCGAGGAAGAAAACTTCAACATTGCTAAGAAGTCTAAACTCAAAGGGAATCCTTCAGTTACTATGGTTGAAGACACTGCTTTGAAAACATCTCAGCTGGGAAAACTCAAAGAGGGAGTTCAACAGTCTGACACTGGAATACAAAAAAGAAAACAGAAGTCACCAGTTAAATTGCAGATAAATGAGAATGAAGCTCAGACCGAGTTTCCTTGGAGTGACAATCAAATGATTGAGATTCTCAAAAGCAGCTTCAATTCAAGGATTCTCCGGCTTTGGATTCGTCGAAATAAAATGGCTAGACCGAAATTTAAAATTATAAGCTCTAGCTCCGAAGAATTTAGGGAAGACACACAAAGTCAAGAGTCTTTGGATGAAGAAACTCCGACTTCATTTCAAAAAACACTACAACATGAGATGACAAAAATAAAGCATAGGAAGAAAAAACAAGCAGAGGACACTGATGATGAAGAAACAGCAGAGGAAGAAACAGAAGATGAAGACGAGGAAGAAACAACAAGTAGATATTGTGTAAAGAAAAGAAGTCAGAAGAGGAATACAACAGATGAGGAATACGATCAAAAAGAAAAGAAGAAGAGAAAAGTTCAATTGCCAAAGACAAAAGAGCAGAAGGCAAAAAAACACGGAAGGAAGAAGAAAGAAGAAAAAGAGGAAACAGAGAAGAAAGAAGAAAACATAGCCAAGATTGATTGGAGGCAGCAGAAATGCACTTTGAGTGCGTTTTGGAGACTAATTGATGCGCACAAGAGCAGAATACCAGCAGCAACTTGGGAAATATTGAGGCATACCGTATTCTGGGGGATGATAGAACCTTTCCTTGAGCGAAAGCTTACTGAAAATCAGCTGCATAAGCATGAGGCAGACCTGGAAATAATTATGAGATATTTTGACAAGAAGAAGAACAAGTTCATATTTGGCGAAAAGGAAATGGAAATAACAGTGCAGGATGTAAAAACATTGTTTGACCTGCCTACTGAAGGCATATATATGGAACTGAACAAGAAGTTGAGCAAGGAGGAGCGTAAAGAGTCTGCAATCTTTGACACGAATGTGAAGAAAGATTCTGTGCTCAAAACCGAAGTAGAGAAGAAATTGGTAAAGGAGCTGACCAAGGAGAAGAAAGAAAAAGATTTGAAGAAACAGCAAGATCCCAAAAAAATAGCCTCACTCATCATCATGTACTTGTTCGCTGCCTTCTTCTTTAGTAGAACTGCAACAAATATCACTTGGGATTTGATCAGTGTCTGTGAAGACGTTGACAACATCAACAAGTTCAATTGGTCGAGGATGATTATTGATTTTCTACTAGATGGAATCCAGAAGTACCAAAAAGACAAGCCGACAACTCTGTCCGGTTGCCTACTTCTAATCTATTACTGGTTCCTCGAGAAGACTAAGATCAAGAACTGGATTCCCGGGAAGGAGACAGAAACACCACGCTTTGTGAGATGGTCAATAAAGGAGATCTTTAACTTGCAAGAGGTTTACAAGAATCCAGGTTGGCCAGAGGTAAGGCAAATCCAAAACATAAAAATATTACACGCTGACGGGAAACATGAGAGTAATTATAGAGGAGCTGGAGACAGTGCTCAGAGAGGAGCCTACAAGGGAAAACATGGAGGAGAAATTGAAAAGGCTGGCAGAAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
DIRP Myb_DNA-binding

Protein Analysis

764

Amino Acids

89.15

Weight (kDa)

9.25

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 493 - 702 1.5e-09 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 941
AasI GACNNNNNNGTC 1 cut(s) 1990
Acc16I TGCGCA 1 cut(s) 1383
Acc36I ACCTGC 1 cut(s) 1617
AclWI GGATC 1 cut(s) 1784
AcoI YGGCCR 1 cut(s) 2144
AcsI RAATTY 3 cut(s) 71, 929, 959
AcuI CTGAAG 5 cut(s) 168, 195, 612, 663, 1638
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 3 cut(s) 219, 1823, 1967
AfiI CCNNNNNNNGG 4 cut(s) 12, 232, 1437, 1619
AflIII ACRYGT 1 cut(s) 123
AjnI CCWGG 2 cut(s) 1506, 2137
AleI CACNNNNGTG 1 cut(s) 1691
Alw21I GWGCWC 2 cut(s) 1713, 2233
Alw26I GTCTC 3 cut(s) 1363, 2060, 2217
AlwI GGATC 1 cut(s) 1784
AlwNI CAGNNNCTG 1 cut(s) 1887
Ama87I CYCGRG 3 cut(s) 284, 2027, 2057
AoxI GGCC 6 cut(s) 3, 131, 246, 267, 307, 2144
ApeKI GCWGC 7 cut(s) 293, 501, 870, 1339, 1403, 1486, 1832
ApoI RAATTY 3 cut(s) 71, 929, 959
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
Asp700I GAANNNNTTC 1 cut(s) 1547
AspLEI GCGC 3 cut(s) 293, 556, 1384
AspS9I GGNCC 5 cut(s) 4, 131, 141, 247, 267
AsuC2I CCSGG 3 cut(s) 8, 2058, 2059
AsuHPI GGTGA 2 cut(s) 215, 777
AvaI CYCGRG 3 cut(s) 284, 2027, 2057
AvaII GGWCC 1 cut(s) 141
BalI TGGCCA 1 cut(s) 2146
BbsI GAAGAC 6 cut(s) 543, 702, 975, 1128, 1899, 2039
Bbv12I GWGCWC 2 cut(s) 1713, 2233
BbvI GCAGC 7 cut(s) 280, 488, 882, 1351, 1415, 1473, 1819
BccI CCATC 3 cut(s) 491, 1946, 2085
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 2 cut(s) 1508, 2139
BclI TGATCA 1 cut(s) 1878
BcnI CCSGG 3 cut(s) 8, 2058, 2059
BcoDI GTCTC 3 cut(s) 1363, 2060, 2217
BfaI CTAG 4 cut(s) 464, 921, 948, 1949
BfoI RGCGCY 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 1617
BglII AGATCT 2 cut(s) 571, 2106
BisI GCNGC 7 cut(s) 294, 502, 871, 1340, 1404, 1487, 1833
BlsI GCNGC 7 cut(s) 295, 503, 872, 1341, 1405, 1488, 1834
Bme1390I CCNGG 5 cut(s) 8, 1508, 2058, 2059, 2139
Bme18I GGWCC 1 cut(s) 141
BmeT110I CYCGRG 3 cut(s) 284, 2027, 2057
BmgT120I GGNCC 5 cut(s) 4, 131, 141, 247, 267
BmiI GGNNCC 4 cut(s) 6, 388, 2024, 2242
BmrFI CCNGG 5 cut(s) 8, 1508, 2058, 2059, 2139
BmsI GCATC 4 cut(s) 500, 541, 576, 1369
BpiI GAAGAC 6 cut(s) 543, 702, 975, 1128, 1899, 2039
BpmI CTGGAG 1 cut(s) 2241
BpuEI CTTGAG 2 cut(s) 601, 1481
BpuMI CCSGG 3 cut(s) 8, 2058, 2059
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 5 cut(s) 6, 285, 833, 1752, 2057
BsaWI WCCGGW 1 cut(s) 1994
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 232, 1437, 1619
Bse1I ACTGG 5 cut(s) 200, 763, 788, 2024, 2054
Bse3DI GCAATG 2 cut(s) 324, 645
BseBI CCWGG 2 cut(s) 1508, 2139
BseDI CCNNGG 5 cut(s) 6, 285, 833, 1752, 2057
BseGI GGATG 6 cut(s) 204, 591, 1000, 1449, 1594, 1935
BseLI CCNNNNNNNGG 4 cut(s) 12, 232, 1437, 1619
BseMI GCAATG 2 cut(s) 324, 645
BseMII CTCAG 4 cut(s) 488, 731, 833, 2246
BseNI ACTGG 5 cut(s) 200, 763, 788, 2024, 2054
BseRI GAGGAG 4 cut(s) 1673, 2229, 2253, 2277
BseXI GCAGC 7 cut(s) 280, 488, 882, 1351, 1415, 1473, 1819
BseYI CCCAGC 1 cut(s) 721
BsgI GTGCAG 2 cut(s) 603, 1604
BshFI GGCC 6 cut(s) 5, 133, 248, 269, 309, 2146
BsiHKAI GWGCWC 2 cut(s) 1713, 2233
BsiHKCI CYCGRG 3 cut(s) 284, 2027, 2057
BsiSI CCGG 4 cut(s) 8, 892, 1995, 2058
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 4 cut(s) 12, 232, 1437, 1619
BsmAI GTCTC 3 cut(s) 1363, 2060, 2217
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 6 cut(s) 5, 133, 248, 269, 309, 2146
BsoBI CYCGRG 3 cut(s) 284, 2027, 2057
Bsp1286I GDGCHC 2 cut(s) 1713, 2233
Bsp143I GATC 7 cut(s) 227, 571, 1198, 1789, 1878, 2040, 2106
BspANI GGCC 6 cut(s) 5, 133, 248, 269, 309, 2146
BspCNI CTCAG 4 cut(s) 487, 730, 832, 2245
BspLI GGNNCC 4 cut(s) 6, 388, 2024, 2242
BspMI ACCTGC 1 cut(s) 1617
BspPI GGATC 1 cut(s) 1784
BspQI GCTCTTC 1 cut(s) 144
BsrDI GCAATG 2 cut(s) 324, 645
BsrI ACTGG 5 cut(s) 200, 763, 788, 2024, 2054
BssECI CCNNGG 5 cut(s) 6, 285, 833, 1752, 2057
BssMI GATC 7 cut(s) 227, 571, 1198, 1789, 1878, 2040, 2106
BssNI GRCGYC 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 833, 1752
Bst2UI CCWGG 2 cut(s) 1508, 2139
Bst4CI ACNGT 5 cut(s) 359, 750, 1432, 1582, 2228
Bst6I CTCTTC 5 cut(s) 144, 285, 547, 1166, 1211
BstACI GRCGYC 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 411, 2281
BstDEI CTNAG 6 cut(s) 474, 651, 717, 819, 2037, 2232
BstENI CCTNNNNNAGG 1 cut(s) 1617
BstF5I GGATG 6 cut(s) 204, 591, 1000, 1449, 1594, 1935
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 3 cut(s) 293, 556, 1384
BstKTI GATC 7 cut(s) 230, 574, 1201, 1792, 1881, 2043, 2109
BstMAI GTCTC 3 cut(s) 1363, 2060, 2217
BstMBI GATC 7 cut(s) 227, 571, 1198, 1789, 1878, 2040, 2106
BstMWI GCNNNNNNNGC 2 cut(s) 406, 1492
BstNI CCWGG 2 cut(s) 1508, 2139
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 5 cut(s) 6, 1506, 2056, 2057, 2137
BstV1I GCAGC 7 cut(s) 280, 488, 882, 1351, 1415, 1473, 1819
BstV2I GAAGAC 6 cut(s) 543, 702, 975, 1128, 1899, 2039
BstX2I RGATCY 3 cut(s) 571, 1789, 2106
BstYI RGATCY 3 cut(s) 571, 1789, 2106
BsuRI GGCC 6 cut(s) 5, 133, 248, 269, 309, 2146
BtsCI GGATG 6 cut(s) 204, 591, 1000, 1449, 1594, 1935
BtsI GCAGTG 2 cut(s) 509, 699
BveI ACCTGC 1 cut(s) 1617
Cac8I GCNNGC 2 cut(s) 411, 2281
CaiI CAGNNNCTG 1 cut(s) 1887
CfoI GCGC 3 cut(s) 293, 556, 1384
Cfr13I GGNCC 5 cut(s) 4, 131, 141, 247, 267
Cfr9I CCCGGG 1 cut(s) 2057
CseI GACGC 1 cut(s) 443
Csp6I GTAC 3 cut(s) 218, 1822, 1966
CviAII CATG 6 cut(s) 124, 1034, 1496, 1819, 2198, 2258
CviQI GTAC 3 cut(s) 218, 1822, 1966
DdeI CTNAG 6 cut(s) 474, 651, 717, 819, 2037, 2232
DpnI GATC 7 cut(s) 229, 573, 1200, 1791, 1880, 2042, 2108
DpnII GATC 7 cut(s) 227, 571, 1198, 1789, 1878, 2040, 2106
DraI TTTAAA 1 cut(s) 934
DrdI GACNNNNNNGTC 1 cut(s) 1990
DseDI GACNNNNNNGTC 1 cut(s) 1990
EaeI YGGCCR 1 cut(s) 2144
Eam1104I CTCTTC 5 cut(s) 144, 285, 547, 1166, 1211
EarI CTCTTC 5 cut(s) 144, 285, 547, 1166, 1211
Eco130I CCWWGG 2 cut(s) 833, 1752
Eco32I GATATC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 141
Eco57I CTGAAG 5 cut(s) 168, 195, 612, 663, 1638
Eco88I CYCGRG 3 cut(s) 284, 2027, 2057
EcoNI CCTNNNNNAGG 1 cut(s) 1617
EcoO109I RGGNCCY 3 cut(s) 131, 247, 267
EcoRII CCWGG 2 cut(s) 1506, 2137
EcoRV GATATC 1 cut(s) 176
EcoT14I CCWWGG 2 cut(s) 833, 1752
ErhI CCWWGG 2 cut(s) 833, 1752
FaeI CATG 6 cut(s) 127, 1037, 1499, 1822, 2201, 2261
FalI AAGNNNNNCTT 2 cut(s) 2093, 2125
FaqI GGGAC 1 cut(s) 463
FatI CATG 6 cut(s) 123, 1033, 1495, 1818, 2197, 2257
FbaI TGATCA 1 cut(s) 1878
Fnu4HI GCNGC 7 cut(s) 294, 502, 871, 1340, 1404, 1487, 1833
FokI GGATG 6 cut(s) 211, 598, 1007, 1456, 1601, 1942
Fsp4HI GCNGC 7 cut(s) 294, 502, 871, 1340, 1404, 1487, 1833
FspAI RTGCGCAY 1 cut(s) 1383
FspBI CTAG 4 cut(s) 464, 921, 948, 1949
FspI TGCGCA 1 cut(s) 1383
GlaI GCGC 3 cut(s) 292, 555, 1383
GluI GCNGC 7 cut(s) 294, 502, 871, 1340, 1404, 1487, 1833
GsaI CCCAGC 1 cut(s) 725
GsuI CTGGAG 1 cut(s) 2241
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 6 cut(s) 5, 133, 248, 269, 309, 2146
HapII CCGG 4 cut(s) 8, 892, 1995, 2058
HgaI GACGC 1 cut(s) 443
HhaI GCGC 3 cut(s) 293, 556, 1384
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 6 cut(s) 127, 1037, 1499, 1822, 2201, 2261
Hin6I GCGC 3 cut(s) 291, 554, 1382
HinP1I GCGC 3 cut(s) 291, 554, 1382
HincII GTYRAC 1 cut(s) 1900
HindII GTYRAC 1 cut(s) 1900
HindIII AAGCTT 2 cut(s) 407, 1469
HpaII CCGG 4 cut(s) 8, 892, 1995, 2058
HphI GGTGA 2 cut(s) 215, 777
Hpy166II GTNNAC 3 cut(s) 362, 1900, 2128
Hpy188I TCNGA 8 cut(s) 121, 496, 754, 822, 955, 1008, 1170, 2235
Hpy188III TCNNGA 6 cut(s) 284, 464, 983, 1960, 2029, 2044
Hpy8I GTNNAC 3 cut(s) 362, 1900, 2128
Hpy99I CGWCG 1 cut(s) 909
HpyCH4III ACNGT 5 cut(s) 359, 750, 1432, 1582, 2228
HpyCH4IV ACGT 2 cut(s) 220, 1896
HpyF10VI GCNNNNNNNGC 2 cut(s) 406, 1492
HpyF3I CTNAG 6 cut(s) 474, 651, 717, 819, 2037, 2232
HpySE526I ACGT 2 cut(s) 220, 1896
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 6 cut(s) 127, 1037, 1499, 1822, 2201, 2261
HspAI GCGC 3 cut(s) 291, 554, 1382
Ksp22I TGATCA 1 cut(s) 1878
Kzo9I GATC 7 cut(s) 227, 571, 1198, 1789, 1878, 2040, 2106
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 5 cut(s) 956, 1660, 1744, 2216, 2240
Lsp1109I GCAGC 7 cut(s) 280, 488, 882, 1351, 1415, 1473, 1819
LweI GCATC 4 cut(s) 500, 541, 576, 1369
MaeI CTAG 4 cut(s) 464, 921, 948, 1949
MaeII ACGT 2 cut(s) 220, 1896
MaeIII GTNAC 7 cut(s) 221, 326, 353, 507, 682, 783, 839
MalI GATC 7 cut(s) 229, 573, 1200, 1791, 1880, 2042, 2108
MboI GATC 7 cut(s) 227, 571, 1198, 1789, 1878, 2040, 2106
MfeI CAATTG 3 cut(s) 486, 1229, 1918
MflI RGATCY 3 cut(s) 571, 1789, 2106
MhlI GDGCHC 2 cut(s) 1713, 2233
MlsI TGGCCA 1 cut(s) 2146
MluNI TGGCCA 1 cut(s) 2146
MlyI GAGTC 3 cut(s) 533, 995, 1679
MmeI TCCRAC 1 cut(s) 1031
Mox20I TGGCCA 1 cut(s) 2146
MroXI GAANNNNTTC 1 cut(s) 1547
MscI TGGCCA 1 cut(s) 2146
MseI TTAA 3 cut(s) 792, 933, 2112
MslI CAYNNNNRTG 6 cut(s) 165, 531, 1494, 1628, 1691, 1817
Msp20I TGGCCA 1 cut(s) 2146
MspA1I CMGCKG 2 cut(s) 721, 1486
MspI CCGG 4 cut(s) 8, 892, 1995, 2058
MspR9I CCNGG 5 cut(s) 8, 1508, 2058, 2059, 2139
MunI CAATTG 3 cut(s) 486, 1229, 1918
MvaI CCWGG 2 cut(s) 1508, 2139
MwoI GCNNNNNNNGC 2 cut(s) 406, 1492
NciI CCSGG 3 cut(s) 8, 2058, 2059
NdeII GATC 7 cut(s) 227, 571, 1198, 1789, 1878, 2040, 2106
NlaIII CATG 6 cut(s) 127, 1037, 1499, 1822, 2201, 2261
NlaIV GGNNCC 4 cut(s) 6, 388, 2024, 2242
NmuCI GTSAC 6 cut(s) 221, 326, 353, 507, 783, 839
NsbI TGCGCA 1 cut(s) 1383
NspI RCATGY 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 1691
PaeR7I CTCGAG 1 cut(s) 2027
PciI ACATGT 1 cut(s) 123
PciSI GCTCTTC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 1547
PfeI GAWTC 9 cut(s) 611, 673, 859, 886, 901, 1703, 1956, 2053, 2134
PkrI GCNGC 7 cut(s) 295, 503, 872, 1341, 1405, 1488, 1834
PleI GAGTC 3 cut(s) 533, 994, 1678
PpsI GAGTC 3 cut(s) 533, 994, 1678
PscI ACATGT 1 cut(s) 123
PsiI TTATAA 1 cut(s) 941
Psp6I CCWGG 2 cut(s) 1506, 2137
PspFI CCCAGC 1 cut(s) 721
PspGI CCWGG 2 cut(s) 1506, 2137
PspN4I GGNNCC 4 cut(s) 6, 388, 2024, 2242
PspPI GGNCC 5 cut(s) 4, 131, 141, 247, 267
PstNI CAGNNNCTG 1 cut(s) 1887
PsuI RGATCY 3 cut(s) 571, 1789, 2106
PvuII CAGCTG 2 cut(s) 721, 1486
RsaI GTAC 3 cut(s) 219, 1823, 1967
RsaNI GTAC 3 cut(s) 218, 1822, 1966
RseI CAYNNNNRTG 6 cut(s) 165, 531, 1494, 1628, 1691, 1817
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 3 cut(s) 792, 933, 2112
SatI GCNGC 7 cut(s) 294, 502, 871, 1340, 1404, 1487, 1833
Sau3AI GATC 7 cut(s) 227, 571, 1198, 1789, 1878, 2040, 2106
Sau96I GGNCC 5 cut(s) 4, 131, 141, 247, 267
SchI GAGTC 3 cut(s) 533, 995, 1679
ScrFI CCNGG 5 cut(s) 8, 1508, 2058, 2059, 2139
SduI GDGCHC 2 cut(s) 1713, 2233
SfaNI GCATC 4 cut(s) 500, 541, 576, 1369
Sfr274I CTCGAG 1 cut(s) 2027
SinI GGWCC 1 cut(s) 141
SlaI CTCGAG 1 cut(s) 2027
SmaI CCCGGG 1 cut(s) 2059
SmiMI CAYNNNNRTG 6 cut(s) 165, 531, 1494, 1628, 1691, 1817
SmlI CTYRAG 3 cut(s) 580, 1460, 2027
SmoI CTYRAG 3 cut(s) 580, 1460, 2027
SspI AATATT 2 cut(s) 1419, 2178
SspMI CTAG 4 cut(s) 464, 921, 948, 1949
StyD4I CCNGG 5 cut(s) 6, 1506, 2056, 2057, 2137
StyI CCWWGG 2 cut(s) 833, 1752
TaaI ACNGT 5 cut(s) 359, 750, 1432, 1582, 2228
TaiI ACGT 2 cut(s) 223, 1899
TaqI TCGA 4 cut(s) 627, 907, 1925, 2028
TaqII GACCGA 2 cut(s) 839, 940
TatI WGTACW 1 cut(s) 1821
TfiI GAWTC 9 cut(s) 611, 673, 859, 886, 901, 1703, 1956, 2053, 2134
Tru1I TTAA 3 cut(s) 792, 933, 2112
Tru9I TTAA 3 cut(s) 792, 933, 2112
TseFI GTSAC 6 cut(s) 221, 326, 353, 507, 783, 839
TseI GCWGC 7 cut(s) 293, 501, 870, 1339, 1403, 1486, 1832
Tsp45I GTSAC 6 cut(s) 221, 326, 353, 507, 783, 839
TspGWI ACGGA 2 cut(s) 442, 1281
TspMI CCCGGG 1 cut(s) 2057
VpaK11BI GGWCC 1 cut(s) 141
XagI CCTNNNNNAGG 1 cut(s) 1617
XapI RAATTY 3 cut(s) 71, 929, 959
XbaI TCTAGA 1 cut(s) 463
XceI RCATGY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 1407
XhoI CTCGAG 1 cut(s) 2027
XmaI CCCGGG 1 cut(s) 2057
XmnI GAANNNNTTC 1 cut(s) 1547
XspI CTAG 4 cut(s) 464, 921, 948, 1949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.