FvH4_7g08490

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000060
Physical Location & Seq
Reverse (-)
8356521 .. 8359619
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08490.t1

Sequence Viewer

Length: 1581 bp
ATGCACAGATACAGGGAGAAAATCCCTCAAAGAACGTGGGATTTGCTGGCCCAAACAACATTTTGGGATACAATTGATGTGTTCAAGAATGAGAAGCTGACTGAGAGACAAGTGAAGAAGCATGAGTTGGATTTTGAACTCATAATGAAGCATTACAACAAAGAAAAAAACAAGTTCATCTTTGGGGAAATTGAAGCAGAGATCACAGTAGATGACGTCTATTCCCTATTCCACATATCTATAGAAGGGGAGGTGGTGGATTTGAAAAACAAGCCTCCGAGGAACAAATGGCCAGACTCTAAATATTTTGAAAAGGGTAGGATATCCAAGGACAACATCAAGAGGCCACAGCTTGAGACTGAGTTGAGTGCTAAGCTTAATAAGCCCGAGAAGAATCAAGATGCAGAAAAAATAGCATCCCTGATCCTAATGTATCTGCTTGCAGTGTTCTTCTTCAGTAGATCGGGAACACATCTGGACTGGGAGTTGATAATAATCTGTGAAAACCTTGAAGAAATTAACAAATACAACTGGTCAAAGATGGTGCTTGATTTCTTGAAGGATGACATTTACAAATACAGAAAGGACAAGGCTCAAATATACAGTGGATGCATTCTTCTGGTTGTGTATTGGTTTCTTGAGAAGACAAGGGTCAGAAACAGAATCACTGGAAATGAGACGAGCACACCGAGGTTTGTCAGATGGAGCATCAAAGAAATATTTGACTGCAAGGATGTACAGAAGAAGCCTACCTTTCTCGAGGATCTTATAAAAGAAGGTCCATGGGAAGACGAAACTGATGATAATGAGATGGAGGAAGAAGAAGACTGTGCCTCAATCAAGCCAGCAGGAAGAAGAACAGTTGATATTAATGTCTGGGAATTTGAGAGCTCTGCTGAGAGATTTGGAGAGGAAGCAACCTGGAAAACCTTGAAGGAGAAGCTTGAAAAACTTACAAAAGCAAATGAAGAGCTCCTGGAAAAGAATGCACAACTGTTGACTAAGGTGAAAGCTGCTGACATCCACATAGAGCAGCTACAGAAGGAAAACAAGGAGCTTCGAGAGTCTTTAAAAAAAGCGAAAGCCAAAAAGACCAAGAAGAAAAATATTCTCTTGAAGATGCAAATGGTAGTAGCAGCTCCAAATGAACACCTTGAGAAGAATGAACCAAATACAGTTGACGCACATTCTCGAGCTCGTCAGACTTCAACACCTGAAGATTCATGTGGAGCAACACCTGCAATACCAATCCAAACGATTGTGATGGGATATGGTGCAGAACAAGAAGATTCGACTATGTGTCAAGAAATAATTCAGACAGTGGTCATGGACATAGTGAAGCAGCAACAACAACAAGAAAAGGTGAAGGAAAATGAAAGTCTGAAGACATATAAGAAGAAGCCGCAGGTCTACATTGAACAGACTGAAGAAGAAATCAATTCTTCCATGGATGATTTTGTTGCTGTTGTTGAGAAAGAAGAAGCACGAGCAAAGAAGAAAGTTGTTCAGCCTTTTTCGATAGAGAGAAATGTGAAGTTGGTTGAAGTTGAACATAAATGCAATGCAATGCAACACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

527

Amino Acids

61.84

Weight (kDa)

5.9

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 37 - 239 2e-12 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
AarI CACCTGC 1 cut(s) 1246
AatII GACGTC 1 cut(s) 219
Acc36I ACCTGC 2 cut(s) 1246, 1396
AccI GTMKAC 1 cut(s) 1410
AciI CCGC 1 cut(s) 1403
AclWI GGATC 2 cut(s) 418, 771
AcoI YGGCCR 1 cut(s) 290
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 4 cut(s) 439, 1236, 1403, 1446
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 738
AhdI GACNNNNNGTC 1 cut(s) 1299
AjnI CCWGG 2 cut(s) 920, 975
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
Alw21I GWGCWC 4 cut(s) 686, 893, 975, 1198
Alw26I GTCTC 3 cut(s) 100, 350, 671
AlwI GGATC 2 cut(s) 418, 771
Ama87I CYCGRG 3 cut(s) 386, 758, 1191
AoxI GGCC 3 cut(s) 48, 290, 344
ApeKI GCWGC 4 cut(s) 1013, 1033, 1136, 1342
ApoI RAATTY 1 cut(s) 881
AseI ATTAAT 1 cut(s) 870
Asp700I GAANNNNTTC 1 cut(s) 1311
AspS9I GGNCC 2 cut(s) 49, 779
AsuHPI GGTGA 2 cut(s) 1018, 1375
AvaI CYCGRG 3 cut(s) 386, 758, 1191
AvaII GGWCC 1 cut(s) 779
BalI TGGCCA 1 cut(s) 292
BanII GRGCYC 3 cut(s) 893, 975, 1198
BauI CACGAG 1 cut(s) 1485
BbsI GAAGAC 4 cut(s) 650, 795, 831, 1391
Bbv12I GWGCWC 4 cut(s) 686, 893, 975, 1198
BbvI GCAGC 4 cut(s) 1000, 1045, 1148, 1354
BccI CCATC 4 cut(s) 535, 696, 805, 1258
BciT130I CCWGG 2 cut(s) 922, 977
BciVI GTATCC 1 cut(s) 61
BcoDI GTCTC 3 cut(s) 100, 350, 671
BfmI CTRYAG 2 cut(s) 240, 1037
BfuAI ACCTGC 2 cut(s) 1246, 1396
BfuI GTATCC 1 cut(s) 61
BisI GCNGC 5 cut(s) 1014, 1034, 1137, 1343, 1403
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 5 cut(s) 1015, 1035, 1138, 1344, 1404
Bme1390I CCNGG 2 cut(s) 922, 977
Bme18I GGWCC 1 cut(s) 779
BmeRI GACNNNNNGTC 1 cut(s) 1299
BmeT110I CYCGRG 3 cut(s) 386, 758, 1191
BmgT120I GGNCC 2 cut(s) 49, 779
BmrFI CCNGG 2 cut(s) 922, 977
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 5 cut(s) 391, 425, 599, 717, 1110
BmuI ACTGGG 1 cut(s) 490
BoxI GACNNNNGTC 2 cut(s) 650, 1322
BpiI GAAGAC 4 cut(s) 650, 795, 831, 1391
Bpu1102I GCTNAGC 1 cut(s) 372
BpuEI CTTGAG 3 cut(s) 374, 659, 1175
BsaBI GATNNNNATC 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 5 cut(s) 278, 327, 689, 782, 1446
Bse1I ACTGG 3 cut(s) 485, 536, 673
Bse3DI GCAATG 2 cut(s) 1567, 1572
Bse8I GATNNNNATC 1 cut(s) 494
BseBI CCWGG 2 cut(s) 922, 977
BseDI CCNNGG 5 cut(s) 278, 327, 689, 782, 1446
BseGI GGATG 6 cut(s) 416, 568, 614, 739, 1020, 1456
BseJI GATNNNNATC 1 cut(s) 494
BseMI GCAATG 2 cut(s) 1567, 1572
BseMII CTCAG 3 cut(s) 93, 351, 888
BseNI ACTGG 3 cut(s) 485, 536, 673
BseXI GCAGC 4 cut(s) 1000, 1045, 1148, 1354
BsgI GTGCAG 1 cut(s) 1296
BshFI GGCC 3 cut(s) 50, 292, 346
BsiHKAI GWGCWC 4 cut(s) 686, 893, 975, 1198
BsiHKCI CYCGRG 3 cut(s) 386, 758, 1191
BsmAI GTCTC 3 cut(s) 100, 350, 671
BsmBI CGTCTC 1 cut(s) 671
BsmI GAATGC 2 cut(s) 612, 991
BsnI GGCC 3 cut(s) 50, 292, 346
BsoBI CYCGRG 3 cut(s) 386, 758, 1191
Bsp1286I GDGCHC 4 cut(s) 686, 893, 975, 1198
Bsp1407I TGTACA 1 cut(s) 736
Bsp143I GATC 4 cut(s) 201, 423, 461, 763
Bsp1720I GCTNAGC 1 cut(s) 372
Bsp19I CCATGG 2 cut(s) 782, 1446
BspACI CCGC 1 cut(s) 1403
BspANI GGCC 3 cut(s) 50, 292, 346
BspCNI CTCAG 3 cut(s) 94, 352, 889
BspMI ACCTGC 2 cut(s) 1246, 1396
BspPI GGATC 2 cut(s) 418, 771
BspQI GCTCTTC 1 cut(s) 963
BsrDI GCAATG 2 cut(s) 1567, 1572
BsrGI TGTACA 1 cut(s) 736
BsrI ACTGG 3 cut(s) 485, 536, 673
BssECI CCNNGG 5 cut(s) 278, 327, 689, 782, 1446
BssMI GATC 4 cut(s) 201, 423, 461, 763
BssNI GRCGYC 1 cut(s) 216
BssSI CACGAG 1 cut(s) 1485
BssT1I CCWWGG 3 cut(s) 327, 782, 1446
Bst2BI CACGAG 1 cut(s) 1485
Bst2UI CCWGG 2 cut(s) 922, 977
Bst4CI ACNGT 7 cut(s) 208, 605, 830, 862, 996, 1177, 1321
Bst6I CTCTTC 1 cut(s) 963
BstACI GRCGYC 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 1238
BstAUI TGTACA 1 cut(s) 736
BstC8I GCNNGC 3 cut(s) 48, 441, 846
BstDEI CTNAG 5 cut(s) 102, 360, 372, 897, 1002
BstDSI CCRYGG 2 cut(s) 782, 1446
BstF5I GGATG 6 cut(s) 416, 568, 614, 739, 1020, 1456
BstKTI GATC 4 cut(s) 204, 426, 464, 766
BstMAI GTCTC 3 cut(s) 100, 350, 671
BstMBI GATC 4 cut(s) 201, 423, 461, 763
BstMWI GCNNNNNNNGC 2 cut(s) 382, 1238
BstNI CCWGG 2 cut(s) 922, 977
BstPAI GACNNNNGTC 2 cut(s) 650, 1322
BstSCI CCNGG 2 cut(s) 920, 975
BstSFI CTRYAG 2 cut(s) 240, 1037
BstV1I GCAGC 4 cut(s) 1000, 1045, 1148, 1354
BstV2I GAAGAC 4 cut(s) 650, 795, 831, 1391
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 3 cut(s) 50, 292, 346
BtgI CCRYGG 2 cut(s) 782, 1446
BtsCI GGATG 6 cut(s) 416, 568, 614, 739, 1020, 1456
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 4 cut(s) 450, 610, 666, 1326
BveI ACCTGC 2 cut(s) 1246, 1396
Cac8I GCNNGC 3 cut(s) 48, 441, 846
Cfr13I GGNCC 2 cut(s) 49, 779
CseI GACGC 1 cut(s) 1190
Csp6I GTAC 1 cut(s) 737
CspCI CAANNNNNGTGG 2 cut(s) 17, 52
CviAII CATG 5 cut(s) 122, 783, 1224, 1327, 1447
CviQI GTAC 1 cut(s) 737
DdeI CTNAG 5 cut(s) 102, 360, 372, 897, 1002
DpnI GATC 4 cut(s) 203, 425, 463, 765
DpnII GATC 4 cut(s) 201, 423, 461, 763
DraI TTTAAA 1 cut(s) 1071
DriI GACNNNNNGTC 1 cut(s) 1299
EaeI YGGCCR 1 cut(s) 290
Eam1104I CTCTTC 1 cut(s) 963
Eam1105I GACNNNNNGTC 1 cut(s) 1299
EarI CTCTTC 1 cut(s) 963
Ecl136II GAGCTC 3 cut(s) 891, 973, 1196
Eco130I CCWWGG 3 cut(s) 327, 782, 1446
Eco24I GRGCYC 3 cut(s) 893, 975, 1198
Eco32I GATATC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 779
Eco53kI GAGCTC 3 cut(s) 891, 973, 1196
Eco57I CTGAAG 4 cut(s) 439, 1236, 1403, 1446
Eco88I CYCGRG 3 cut(s) 386, 758, 1191
EcoICRI GAGCTC 3 cut(s) 891, 973, 1196
EcoRII CCWGG 2 cut(s) 920, 975
EcoRV GATATC 1 cut(s) 324
EcoT14I CCWWGG 3 cut(s) 327, 782, 1446
EcoT22I ATGCAT 1 cut(s) 614
EcoT38I GRGCYC 3 cut(s) 893, 975, 1198
ErhI CCWWGG 3 cut(s) 327, 782, 1446
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 5 cut(s) 125, 786, 1227, 1330, 1450
FalI AAGNNNNNCTT 4 cut(s) 164, 196, 737, 769
FatI CATG 5 cut(s) 121, 782, 1223, 1326, 1446
FblI GTMKAC 1 cut(s) 1410
Fnu4HI GCNGC 5 cut(s) 1014, 1034, 1137, 1343, 1403
FokI GGATG 6 cut(s) 403, 575, 621, 746, 1007, 1463
FriOI GRGCYC 3 cut(s) 893, 975, 1198
Fsp4HI GCNGC 5 cut(s) 1014, 1034, 1137, 1343, 1403
GluI GCNGC 5 cut(s) 1014, 1034, 1137, 1343, 1403
HaeIII GGCC 3 cut(s) 50, 292, 346
HgaI GACGC 1 cut(s) 1190
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 5 cut(s) 125, 786, 1227, 1330, 1450
HincII GTYRAC 2 cut(s) 999, 1180
HindII GTYRAC 2 cut(s) 999, 1180
HindIII AAGCTT 2 cut(s) 374, 941
HinfI GANTC 6 cut(s) 296, 394, 663, 1064, 1220, 1289
HphI GGTGA 2 cut(s) 1018, 1375
Hpy166II GTNNAC 3 cut(s) 999, 1180, 1411
Hpy188I TCNGA 6 cut(s) 279, 656, 701, 1203, 1317, 1383
Hpy8I GTNNAC 3 cut(s) 999, 1180, 1411
HpyAV CCTTC 6 cut(s) 239, 553, 770, 928, 1036, 1360
HpyCH4III ACNGT 7 cut(s) 208, 605, 830, 862, 996, 1177, 1321
HpyCH4IV ACGT 2 cut(s) 35, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 1238
HpyF3I CTNAG 5 cut(s) 102, 360, 372, 897, 1002
HpySE526I ACGT 2 cut(s) 35, 216
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 5 cut(s) 125, 786, 1227, 1330, 1450
Kzo9I GATC 4 cut(s) 201, 423, 461, 763
LguI GCTCTTC 1 cut(s) 963
LmnI GCTCC 5 cut(s) 705, 978, 1054, 1144, 1229
Lsp1109I GCAGC 4 cut(s) 1000, 1045, 1148, 1354
LweI GCATC 5 cut(s) 391, 425, 599, 717, 1110
MaeII ACGT 2 cut(s) 35, 216
MalI GATC 4 cut(s) 203, 425, 463, 765
MboI GATC 4 cut(s) 201, 423, 461, 763
MfeI CAATTG 2 cut(s) 72, 1576
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 4 cut(s) 686, 893, 975, 1198
MlsI TGGCCA 1 cut(s) 292
MluCI AATT 7 cut(s) 72, 189, 516, 881, 1311, 1438, 1576
MluNI TGGCCA 1 cut(s) 292
MlyI GAGTC 2 cut(s) 290, 1073
MmeI TCCRAC 1 cut(s) 108
Mox20I TGGCCA 1 cut(s) 292
Mph1103I ATGCAT 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 1311
MscI TGGCCA 1 cut(s) 292
MseI TTAA 4 cut(s) 378, 519, 870, 1070
Msp20I TGGCCA 1 cut(s) 292
MspR9I CCNGG 2 cut(s) 922, 977
MunI CAATTG 2 cut(s) 72, 1576
Mva1269I GAATGC 2 cut(s) 612, 991
MvaI CCWGG 2 cut(s) 922, 977
MwoI GCNNNNNNNGC 2 cut(s) 382, 1238
NcoI CCATGG 2 cut(s) 782, 1446
NdeII GATC 4 cut(s) 201, 423, 461, 763
NlaIII CATG 5 cut(s) 125, 786, 1227, 1330, 1450
NsiI ATGCAT 1 cut(s) 614
PaeR7I CTCGAG 2 cut(s) 758, 1191
PaqCI CACCTGC 1 cut(s) 1246
PciSI GCTCTTC 1 cut(s) 963
PcsI WCGNNNNNNNCGW 1 cut(s) 686
PctI GAATGC 2 cut(s) 612, 991
PdmI GAANNNNTTC 1 cut(s) 1311
PfeI GAWTC 4 cut(s) 394, 663, 1220, 1289
PfoI TCCNGGA 1 cut(s) 975
PkrI GCNGC 5 cut(s) 1015, 1035, 1138, 1344, 1404
PleI GAGTC 2 cut(s) 290, 1072
PpsI GAGTC 2 cut(s) 290, 1072
PshAI GACNNNNGTC 2 cut(s) 650, 1322
PshBI ATTAAT 1 cut(s) 870
PsiI TTATAA 1 cut(s) 770
Psp124BI GAGCTC 3 cut(s) 893, 975, 1198
Psp6I CCWGG 2 cut(s) 920, 975
PspGI CCWGG 2 cut(s) 920, 975
PspPI GGNCC 2 cut(s) 49, 779
PsuI RGATCY 1 cut(s) 763
RsaI GTAC 1 cut(s) 738
RsaNI GTAC 1 cut(s) 737
SacI GAGCTC 3 cut(s) 893, 975, 1198
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 4 cut(s) 378, 519, 870, 1070
SatI GCNGC 5 cut(s) 1014, 1034, 1137, 1343, 1403
Sau3AI GATC 4 cut(s) 201, 423, 461, 763
Sau96I GGNCC 2 cut(s) 49, 779
SchI GAGTC 2 cut(s) 290, 1073
ScrFI CCNGG 2 cut(s) 922, 977
SduI GDGCHC 4 cut(s) 686, 893, 975, 1198
SfaNI GCATC 5 cut(s) 391, 425, 599, 717, 1110
SfcI CTRYAG 2 cut(s) 240, 1037
Sfr274I CTCGAG 2 cut(s) 758, 1191
SinI GGWCC 1 cut(s) 779
SlaI CTCGAG 2 cut(s) 758, 1191
SmlI CTYRAG 5 cut(s) 353, 638, 758, 1154, 1191
SmoI CTYRAG 5 cut(s) 353, 638, 758, 1154, 1191
Sse9I AATT 7 cut(s) 72, 189, 516, 881, 1311, 1438, 1576
SsiI CCGC 1 cut(s) 1403
SspI AATATT 3 cut(s) 305, 720, 1108
SstI GAGCTC 3 cut(s) 893, 975, 1198
StyD4I CCNGG 2 cut(s) 920, 975
StyI CCWWGG 3 cut(s) 327, 782, 1446
TaaI ACNGT 7 cut(s) 208, 605, 830, 862, 996, 1177, 1321
TaiI ACGT 2 cut(s) 38, 219
TaqI TCGA 5 cut(s) 759, 1060, 1192, 1292, 1517
TasI AATT 7 cut(s) 72, 189, 516, 881, 1311, 1438, 1576
TatI WGTACW 1 cut(s) 736
TauI GCSGC 1 cut(s) 1405
TfiI GAWTC 4 cut(s) 394, 663, 1220, 1289
Tru1I TTAA 4 cut(s) 378, 519, 870, 1070
Tru9I TTAA 4 cut(s) 378, 519, 870, 1070
TscAI CASTG 4 cut(s) 450, 610, 673, 1326
TseI GCWGC 4 cut(s) 1013, 1033, 1136, 1342
TspDTI ATGAA 7 cut(s) 161, 166, 981, 1161, 1179, 1212, 1389
TspRI CASTG 4 cut(s) 450, 610, 673, 1326
VpaK11BI GGWCC 1 cut(s) 779
VspI ATTAAT 1 cut(s) 870
XapI RAATTY 1 cut(s) 881
XhoI CTCGAG 2 cut(s) 758, 1191
XmiI GTMKAC 1 cut(s) 1410
XmnI GAANNNNTTC 1 cut(s) 1311
ZraI GACGTC 1 cut(s) 217
Zsp2I ATGCAT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.