Rroxscaffold_3G00239940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000060
Physical Location & Seq
Reverse (-)
31254002 .. 31255693
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239940.1

Sequence Viewer

Length: 555 bp
ATGAAAGTTCTGCTGAAAGAAGTGGATAAGGTGGTTGAAGATGATGGTGAAAAACATCAAATGGAGGAGCAAATGAAGAAACTCTCGAAGCAAATGAAGGCCTCGCAAACCATATTTGGGAATGTGAAAGAAAATAAGAGAAAGGCAGCTGTGAAGGACAAGGATGACGACTTTAAGAATGACACACCGAAGATGTTGAAGACTTATGGAAAGAGAAGAAAGACTGTTGCACAAGAACAGCCAAGCAGAAACCGAAGCCGGCATCGAAACTGTAGAAAGGCCAATGAGTATATACCCTACTGGACAAGTGAAAATGGGATAATAGGGGTAACCAGGGCAGACATGAAGATTATCGTACAAGAGCAAGATCCGGATAACTGTGAAGTAACTTCAGCTACCCCAAGGTGCTTATCCCCAATCCACCATTGCTACAGCCAGCACTACACCCTTCTTGTCATTTACAATGTGAAAAAACGGTTTGTTCACAAGAACTATATGCTGCCTCCAAAGAAGGAATGGACAAAAGATAACCAACACTACAACAACGCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.73

Weight (kDa)

9.55

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 370
AclWI GGATC 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 2 cut(s) 38, 199
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 2 cut(s) 149, 395
AluI AGCT 2 cut(s) 149, 395
AlwI GGATC 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 2 cut(s) 99, 279
ApeKI GCWGC 2 cut(s) 146, 499
AsuHPI GGTGA 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 158, 486
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 334
BfaI CTAG 1 cut(s) 553
BfmI CTRYAG 2 cut(s) 271, 430
BisI GCNGC 2 cut(s) 147, 500
BlsI GCNGC 2 cut(s) 148, 501
Bme1390I CCNGG 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 334
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 333, 401
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 424
BseAI TCCGGA 1 cut(s) 370
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 333, 401
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 424
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 158, 486
BshFI GGCC 2 cut(s) 101, 281
BsiSI CCGG 2 cut(s) 259, 371
BslI CCNNNNNNNGG 1 cut(s) 117
BsnI GGCC 2 cut(s) 101, 281
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 1 cut(s) 367
BspANI GGCC 2 cut(s) 101, 281
BspEI TCCGGA 1 cut(s) 370
BspPI GGATC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 1 cut(s) 305
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 333, 401
BssMI GATC 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 4 cut(s) 226, 272, 380, 477
BstC8I GCNNGC 2 cut(s) 260, 437
BstEII GGTNACC 1 cut(s) 328
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstNI CCWGG 1 cut(s) 334
BstPI GGTNACC 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 332
BstSFI CTRYAG 2 cut(s) 271, 430
BstV1I GCAGC 2 cut(s) 158, 486
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 2 cut(s) 101, 281
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 260, 437
Cfr10I RCCGGY 1 cut(s) 258
Csp6I GTAC 1 cut(s) 356
CviAII CATG 1 cut(s) 343
CviJI RGCY 7 cut(s) 101, 149, 241, 258, 281, 395, 435
CviKI_1 RGCY 7 cut(s) 101, 149, 241, 258, 281, 395, 435
CviQI GTAC 1 cut(s) 356
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
Eco130I CCWWGG 1 cut(s) 401
Eco147I AGGCCT 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 375
Eco91I GGTNACC 1 cut(s) 328
EcoO65I GGTNACC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 1 cut(s) 346
FaiI YATR 7 cut(s) 113, 207, 291, 293, 344, 495, 497
FatI CATG 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 147, 500
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 147, 500
FspBI CTAG 1 cut(s) 553
GluI GCNGC 2 cut(s) 147, 500
HaeIII GGCC 2 cut(s) 101, 281
HapII CCGG 2 cut(s) 259, 371
Hin1II CATG 1 cut(s) 346
HpaII CCGG 2 cut(s) 259, 371
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 484
Hpy188III TCNNGA 2 cut(s) 85, 371
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 4 cut(s) 91, 148, 458, 505
HpyCH4III ACNGT 4 cut(s) 226, 272, 380, 477
HpyCH4V TGCA 1 cut(s) 230
Hsp92II CATG 1 cut(s) 346
Kpn2I TCCGGA 1 cut(s) 370
KroI GCCGGC 1 cut(s) 258
KroNI GCCGGC 1 cut(s) 260
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 6 cut(s) 272, 286, 319, 346, 384, 449
Lsp1109I GCAGC 2 cut(s) 158, 486
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 553
MaeIII GTNAC 2 cut(s) 328, 385
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 6 cut(s) 50, 88, 202, 211, 228, 358
MflI RGATCY 1 cut(s) 367
MnlI CCTC 3 cut(s) 58, 112, 513
MroI TCCGGA 1 cut(s) 370
MroNI GCCGGC 1 cut(s) 258
MseI TTAA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 2 cut(s) 259, 371
MspR9I CCNGG 1 cut(s) 334
MvaI CCWGG 1 cut(s) 334
NaeI GCCGGC 1 cut(s) 260
NdeII GATC 1 cut(s) 367
NgoMIV GCCGGC 1 cut(s) 258
NlaIII CATG 1 cut(s) 346
PceI AGGCCT 1 cut(s) 101
PdiI GCCGGC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 148, 501
Psp6I CCWGG 1 cut(s) 332
PspEI GGTNACC 1 cut(s) 328
PspGI CCWGG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 367
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 2 cut(s) 147, 500
Sau3AI GATC 1 cut(s) 367
ScrFI CCNGG 1 cut(s) 334
SetI ASST 4 cut(s) 33, 151, 397, 407
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 2 cut(s) 271, 430
SseBI AGGCCT 1 cut(s) 101
SspMI CTAG 1 cut(s) 553
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 4 cut(s) 226, 272, 380, 477
TaqI TCGA 2 cut(s) 86, 265
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 2 cut(s) 146, 499
TspDTI ATGAA 4 cut(s) 17, 89, 110, 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XspI CTAG 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.