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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 381 |
| Acc65I | GGTACC | 1 cut(s) | 217 |
| AccB1I | GGYRCC | 1 cut(s) | 217 |
| AciI | CCGC | 3 cut(s) | 59, 91, 236 |
| AclWI | GGATC | 1 cut(s) | 31 |
| AcuI | CTGAAG | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 219 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 175 |
| AjnI | CCWGG | 2 cut(s) | 63, 222 |
| AluBI | AGCT | 6 cut(s) | 43, 134, 175, 204, 406, 438 |
| AluI | AGCT | 6 cut(s) | 43, 134, 175, 204, 406, 438 |
| Alw26I | GTCTC | 1 cut(s) | 305 |
| AlwI | GGATC | 1 cut(s) | 31 |
| Ama87I | CYCGRG | 1 cut(s) | 170 |
| AoxI | GGCC | 1 cut(s) | 143 |
| ApeKI | GCWGC | 1 cut(s) | 43 |
| Asp718I | GGTACC | 1 cut(s) | 217 |
| AspLEI | GCGC | 1 cut(s) | 382 |
| AspS9I | GGNCC | 3 cut(s) | 61, 137, 370 |
| AsuHPI | GGTGA | 2 cut(s) | 191, 320 |
| AvaI | CYCGRG | 1 cut(s) | 170 |
| AvaII | GGWCC | 3 cut(s) | 61, 137, 370 |
| BanI | GGYRCC | 1 cut(s) | 217 |
| BbsI | GAAGAC | 1 cut(s) | 171 |
| BbvI | GCAGC | 1 cut(s) | 30 |
| BccI | CCATC | 1 cut(s) | 286 |
| BciT130I | CCWGG | 2 cut(s) | 65, 224 |
| BcoDI | GTCTC | 1 cut(s) | 305 |
| BglII | AGATCT | 1 cut(s) | 445 |
| BisI | GCNGC | 1 cut(s) | 44 |
| BlsI | GCNGC | 1 cut(s) | 45 |
| Bme1390I | CCNGG | 2 cut(s) | 65, 224 |
| Bme18I | GGWCC | 3 cut(s) | 61, 137, 370 |
| BmeT110I | CYCGRG | 1 cut(s) | 170 |
| BmgT120I | GGNCC | 3 cut(s) | 61, 137, 370 |
| BmiI | GGNNCC | 2 cut(s) | 9, 219 |
| BmrFI | CCNGG | 2 cut(s) | 65, 224 |
| BmrI | ACTGGG | 1 cut(s) | 223 |
| BmuI | ACTGGG | 1 cut(s) | 223 |
| BpiI | GAAGAC | 1 cut(s) | 171 |
| BpmI | CTGGAG | 1 cut(s) | 86 |
| BsaJI | CCNNGG | 2 cut(s) | 140, 222 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 326, 356 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 175 |
| Bse1I | ACTGG | 2 cut(s) | 165, 218 |
| BseBI | CCWGG | 2 cut(s) | 65, 224 |
| BseDI | CCNNGG | 2 cut(s) | 140, 222 |
| BseGI | GGATG | 1 cut(s) | 124 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 175 |
| BseNI | ACTGG | 2 cut(s) | 165, 218 |
| BseXI | GCAGC | 1 cut(s) | 30 |
| BseYI | CCCAGC | 1 cut(s) | 175 |
| BsgI | GTGCAG | 2 cut(s) | 29, 209 |
| Bsh1285I | CGRYCG | 1 cut(s) | 91 |
| BshFI | GGCC | 1 cut(s) | 145 |
| BshNI | GGYRCC | 1 cut(s) | 217 |
| BsiEI | CGRYCG | 1 cut(s) | 91 |
| BsiHKCI | CYCGRG | 1 cut(s) | 170 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 175 |
| BsmAI | GTCTC | 1 cut(s) | 305 |
| BsnI | GGCC | 1 cut(s) | 145 |
| BsoBI | CYCGRG | 1 cut(s) | 170 |
| Bsp143I | GATC | 3 cut(s) | 36, 121, 445 |
| Bsp19I | CCATGG | 1 cut(s) | 140 |
| BspACI | CCGC | 3 cut(s) | 59, 91, 236 |
| BspANI | GGCC | 1 cut(s) | 145 |
| BspHI | TCATGA | 1 cut(s) | 75 |
| BspLI | GGNNCC | 2 cut(s) | 9, 219 |
| BspPI | GGATC | 1 cut(s) | 31 |
| BspT107I | GGYRCC | 1 cut(s) | 217 |
| BsrI | ACTGG | 2 cut(s) | 165, 218 |
| BssECI | CCNNGG | 2 cut(s) | 140, 222 |
| BssMI | GATC | 3 cut(s) | 36, 121, 445 |
| BssT1I | CCWWGG | 1 cut(s) | 140 |
| Bst2UI | CCWGG | 2 cut(s) | 65, 224 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 353 |
| BstC8I | GCNNGC | 4 cut(s) | 147, 229, 354, 404 |
| BstDSI | CCRYGG | 1 cut(s) | 140 |
| BstF5I | GGATG | 1 cut(s) | 124 |
| BstHHI | GCGC | 1 cut(s) | 382 |
| BstKTI | GATC | 3 cut(s) | 39, 124, 448 |
| BstMAI | GTCTC | 1 cut(s) | 305 |
| BstMBI | GATC | 3 cut(s) | 36, 121, 445 |
| BstMCI | CGRYCG | 1 cut(s) | 91 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 233, 353 |
| BstNI | CCWGG | 2 cut(s) | 65, 224 |
| BstSCI | CCNGG | 2 cut(s) | 63, 222 |
| BstV1I | GCAGC | 1 cut(s) | 30 |
| BstV2I | GAAGAC | 1 cut(s) | 171 |
| BstX2I | RGATCY | 2 cut(s) | 36, 445 |
| BstYI | RGATCY | 2 cut(s) | 36, 445 |
| BsuRI | GGCC | 1 cut(s) | 145 |
| BtgI | CCRYGG | 1 cut(s) | 140 |
| BtsCI | GGATG | 1 cut(s) | 124 |
| Cac8I | GCNNGC | 4 cut(s) | 147, 229, 354, 404 |
| CciI | TCATGA | 1 cut(s) | 75 |
| CfoI | GCGC | 1 cut(s) | 382 |
| Cfr13I | GGNCC | 3 cut(s) | 61, 137, 370 |
| Csp6I | GTAC | 1 cut(s) | 218 |
| CviAII | CATG | 3 cut(s) | 53, 76, 141 |
| CviQI | GTAC | 1 cut(s) | 218 |
| DpnI | GATC | 3 cut(s) | 38, 123, 447 |
| DpnII | GATC | 3 cut(s) | 36, 121, 445 |
| Eco130I | CCWWGG | 1 cut(s) | 140 |
| Eco47I | GGWCC | 3 cut(s) | 61, 137, 370 |
| Eco57I | CTGAAG | 1 cut(s) | 428 |
| Eco88I | CYCGRG | 1 cut(s) | 170 |
| EcoO109I | RGGNCCY | 1 cut(s) | 370 |
| EcoRII | CCWGG | 2 cut(s) | 63, 222 |
| EcoT14I | CCWWGG | 1 cut(s) | 140 |
| ErhI | CCWWGG | 1 cut(s) | 140 |
| FaeI | CATG | 3 cut(s) | 56, 79, 144 |
| FaiI | YATR | 5 cut(s) | 54, 77, 142, 397, 428 |
| FatI | CATG | 3 cut(s) | 52, 75, 140 |
| Fnu4HI | GCNGC | 1 cut(s) | 44 |
| FokI | GGATG | 1 cut(s) | 131 |
| Fsp4HI | GCNGC | 1 cut(s) | 44 |
| FspI | TGCGCA | 1 cut(s) | 381 |
| GlaI | GCGC | 1 cut(s) | 381 |
| GluI | GCNGC | 1 cut(s) | 44 |
| GsaI | CCCAGC | 1 cut(s) | 179 |
| GsuI | CTGGAG | 1 cut(s) | 86 |
| HaeIII | GGCC | 1 cut(s) | 145 |
| HhaI | GCGC | 1 cut(s) | 382 |
| Hin1II | CATG | 3 cut(s) | 56, 79, 144 |
| Hin6I | GCGC | 1 cut(s) | 380 |
| HinP1I | GCGC | 1 cut(s) | 380 |
| HindIII | AAGCTT | 1 cut(s) | 202 |
| HphI | GGTGA | 2 cut(s) | 191, 320 |
| Hpy188I | TCNGA | 1 cut(s) | 126 |
| Hpy188III | TCNNGA | 1 cut(s) | 76 |
| Hpy99I | CGWCG | 1 cut(s) | 422 |
| HpyAV | CCTTC | 1 cut(s) | 403 |
| HpyCH4V | TGCA | 3 cut(s) | 46, 149, 190 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 233, 353 |
| Hsp92II | CATG | 3 cut(s) | 56, 79, 144 |
| HspAI | GCGC | 1 cut(s) | 380 |
| KpnI | GGTACC | 1 cut(s) | 221 |
| Kzo9I | GATC | 3 cut(s) | 36, 121, 445 |
| LmnI | GCTCC | 1 cut(s) | 435 |
| Lsp1109I | GCAGC | 1 cut(s) | 30 |
| MalI | GATC | 3 cut(s) | 38, 123, 447 |
| MboI | GATC | 3 cut(s) | 36, 121, 445 |
| MboII | GAAGA | 1 cut(s) | 176 |
| MflI | RGATCY | 2 cut(s) | 36, 445 |
| MluCI | AATT | 3 cut(s) | 153, 282, 463 |
| MnlI | CCTC | 6 cut(s) | 72, 178, 179, 289, 328, 361 |
| MslI | CAYNNNNRTG | 1 cut(s) | 51 |
| MspA1I | CMGCKG | 1 cut(s) | 43 |
| MspR9I | CCNGG | 2 cut(s) | 65, 224 |
| MvaI | CCWGG | 2 cut(s) | 65, 224 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 233, 353 |
| NcoI | CCATGG | 1 cut(s) | 140 |
| NdeII | GATC | 3 cut(s) | 36, 121, 445 |
| NlaIII | CATG | 3 cut(s) | 56, 79, 144 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 219 |
| NsbI | TGCGCA | 1 cut(s) | 381 |
| PaeR7I | CTCGAG | 1 cut(s) | 170 |
| PagI | TCATGA | 1 cut(s) | 75 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 93 |
| PkrI | GCNGC | 1 cut(s) | 45 |
| PpuMI | RGGWCCY | 1 cut(s) | 370 |
| Psp5II | RGGWCCY | 1 cut(s) | 370 |
| Psp6I | CCWGG | 2 cut(s) | 63, 222 |
| PspFI | CCCAGC | 1 cut(s) | 175 |
| PspGI | CCWGG | 2 cut(s) | 63, 222 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 219 |
| PspPI | GGNCC | 3 cut(s) | 61, 137, 370 |
| PspPPI | RGGWCCY | 1 cut(s) | 370 |
| PspXI | VCTCGAGB | 1 cut(s) | 170 |
| PsuI | RGATCY | 2 cut(s) | 36, 445 |
| PvuII | CAGCTG | 1 cut(s) | 43 |
| RsaI | GTAC | 1 cut(s) | 219 |
| RsaNI | GTAC | 1 cut(s) | 218 |
| RseI | CAYNNNNRTG | 1 cut(s) | 51 |
| SatI | GCNGC | 1 cut(s) | 44 |
| Sau3AI | GATC | 3 cut(s) | 36, 121, 445 |
| Sau96I | GGNCC | 3 cut(s) | 61, 137, 370 |
| ScrFI | CCNGG | 2 cut(s) | 65, 224 |
| Sfr274I | CTCGAG | 1 cut(s) | 170 |
| SinI | GGWCC | 3 cut(s) | 61, 137, 370 |
| SlaI | CTCGAG | 1 cut(s) | 170 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 51 |
| SmlI | CTYRAG | 1 cut(s) | 170 |
| SmoI | CTYRAG | 1 cut(s) | 170 |
| Sse9I | AATT | 3 cut(s) | 153, 282, 463 |
| SsiI | CCGC | 3 cut(s) | 59, 91, 236 |
| StyD4I | CCNGG | 2 cut(s) | 63, 222 |
| StyI | CCWWGG | 1 cut(s) | 140 |
| TaqI | TCGA | 2 cut(s) | 87, 171 |
| TasI | AATT | 3 cut(s) | 153, 282, 463 |
| TseI | GCWGC | 1 cut(s) | 43 |
| TspDTI | ATGAA | 2 cut(s) | 69, 267 |
| TspGWI | ACGGA | 1 cut(s) | 347 |
| VpaK11BI | GGWCC | 3 cut(s) | 61, 137, 370 |
| XhoI | CTCGAG | 1 cut(s) | 170 |