Rmu_sc0004277.1_g000054

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004277.1
OG0000060
Physical Location & Seq
Reverse (-)
197833 .. 199578
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004277.1_g000054.1.cds

Sequence Viewer

Length: 1125 bp
atgattgaagcctttctgcaagacaagataacagaaatacagctgcataaacatgaagtggacctcgaaataataatgaggcacttcgaccgcacggaaaataagttcaagtttggtgatgttgttactgaaataacagaagaggacatcacatctttgtttcaccttcctgctgaaggagatgtattcaacgttaataagagggttgtcagggatgaaatggaagactcttcaatatttggcagcccttcgaaaaagcaagctgtcctgagaacggaggttgaaaataaactcataatcgagttgacaaagccggcaaaacagaaagacgcaagaaagattgcagtgttgatcgatgatcgcatatctattcagcacattcttcttcagccgaaccgggactcagattacttgggacatgggctgcagaagtacaggagaaacagtccagcgaccatgaacggatgtctgcttctcatttactactggttccttgagaagaccaaggcagagaactacatcccggggaagcacaaggaaactccaagatttgtgcgatggtcgataaaagaaatattcaacttggagcagctttacaagaatgagaacttggctgtggatctaataaaagttggaccgtggtctgcggatcttggaccggatgacctcgaggtcgatgatgacgagcaggacactccgagctttgacaactggctggccgatgagaggattaaagctctggaggaagaaaagaagacatgggcacaggaaaggaggtcaaaaaataacctcatcagggctctctacatcaggctcggaagagaaaagggacagctccatccacaagaaagtcagcttcagatagttttattaccatccaaagtgccacaagatgaggttgaggaagcagccccctactttggagcaagtgtgagagaggaaccacattatacaacaaatgtgggacatgacacggaggaggtgatattagcatgtcctatctctatggaaatacctgaacaagaggaagaaagccgagaacaacctcaacaacccgaatgtgggaatcaaggagaggaagaacatctcgacagcattgtaaggatgattgctgagaatgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

374

Amino Acids

43.44

Weight (kDa)

4.88

Isoelectric Point (pI)

61.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 671
AbsI CCTCGAGG 1 cut(s) 668
AciI CCGC 2 cut(s) 91, 647
AclI AACGTT 1 cut(s) 192
AclWI GGATC 2 cut(s) 627, 657
AcoI YGGCCR 1 cut(s) 717
AcuI CTGAAG 3 cut(s) 195, 371, 842
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 7 cut(s) 176, 274, 726, 796, 920, 1061, 1062
AgsI TTSAA 6 cut(s) 8, 109, 190, 234, 284, 580
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 7 cut(s) 43, 263, 592, 702, 737, 835, 856
AluI AGCT 7 cut(s) 43, 263, 592, 702, 737, 835, 856
AlwI GGATC 2 cut(s) 627, 657
Ama87I CYCGRG 2 cut(s) 523, 668
AoxI GGCC 1 cut(s) 717
ApeKI GCWGC 5 cut(s) 43, 243, 424, 589, 908
Asp700I GAANNNNTTC 1 cut(s) 12
AspS9I GGNCC 3 cut(s) 61, 635, 656
AsuC2I CCSGG 3 cut(s) 398, 524, 525
AsuHPI GGTGA 3 cut(s) 128, 155, 994
AsuII TTCGAA 1 cut(s) 251
AvaI CYCGRG 2 cut(s) 523, 668
AvaII GGWCC 3 cut(s) 61, 635, 656
BaeGI GKGCMC 1 cut(s) 766
BanII GRGCYC 1 cut(s) 802
BbsI GAAGAC 3 cut(s) 231, 506, 761
BbvI GCAGC 5 cut(s) 30, 255, 411, 601, 920
BccI CCATC 3 cut(s) 552, 846, 883
BcnI CCSGG 3 cut(s) 398, 524, 525
BfmI CTRYAG 1 cut(s) 425
BisI GCNGC 5 cut(s) 44, 244, 425, 590, 909
BlsI GCNGC 5 cut(s) 45, 245, 426, 591, 910
Bme1390I CCNGG 3 cut(s) 398, 524, 525
Bme18I GGWCC 3 cut(s) 61, 635, 656
BmeT110I CYCGRG 2 cut(s) 523, 668
BmgT120I GGNCC 3 cut(s) 61, 635, 656
BmiI GGNNCC 2 cut(s) 491, 942
BmrFI CCNGG 3 cut(s) 398, 524, 525
BoxI GACNNNNGTC 1 cut(s) 640
BpiI GAAGAC 3 cut(s) 231, 506, 761
BpmI CTGGAG 1 cut(s) 761
Bpu14I TTCGAA 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 3 cut(s) 398, 524, 525
Bsa29I ATCGAT 1 cut(s) 354
BsaJI CCNNGG 4 cut(s) 504, 523, 524, 638
BsaWI WCCGGW 1 cut(s) 658
BsaXI ACNNNNNCTCC 4 cut(s) 430, 460, 915, 945
Bsc4I CCNNNNNNNGG 7 cut(s) 176, 274, 726, 796, 920, 1061, 1062
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 2 cut(s) 491, 716
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 4 cut(s) 504, 523, 524, 638
BseGI GGATG 7 cut(s) 220, 470, 519, 667, 838, 875, 1110
BseLI CCNNNNNNNGG 7 cut(s) 176, 274, 726, 796, 920, 1061, 1062
BseMII CTCAG 3 cut(s) 260, 417, 1104
BseNI ACTGG 2 cut(s) 491, 716
BseRI GAGGAG 1 cut(s) 992
BseSI GKGCMC 1 cut(s) 766
BseXI GCAGC 5 cut(s) 30, 255, 411, 601, 920
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 719
BshVI ATCGAT 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 91
BsiHKCI CYCGRG 2 cut(s) 523, 668
BsiSI CCGG 4 cut(s) 314, 397, 524, 659
BslFI GGGAC 4 cut(s) 413, 429, 843, 978
BslI CCNNNNNNNGG 7 cut(s) 176, 274, 726, 796, 920, 1061, 1062
BsmFI GGGAC 4 cut(s) 413, 429, 843, 978
BsnI GGCC 1 cut(s) 719
BsoBI CYCGRG 2 cut(s) 523, 668
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 766, 802
Bsp143I GATC 4 cut(s) 351, 358, 619, 649
BspACI CCGC 2 cut(s) 91, 647
BspANI GGCC 1 cut(s) 719
BspCNI CTCAG 3 cut(s) 261, 416, 1105
BspDI ATCGAT 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 491, 942
BspMAI CTGCAG 1 cut(s) 429
BspPI GGATC 2 cut(s) 627, 657
BspT104I TTCGAA 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 2 cut(s) 491, 716
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 4 cut(s) 504, 523, 524, 638
BssMI GATC 4 cut(s) 351, 358, 619, 649
BssT1I CCWWGG 1 cut(s) 504
Bst4CI ACNGT 2 cut(s) 446, 639
Bst6I CTCTTC 3 cut(s) 135, 235, 814
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 261, 315, 717
BstDEI CTNAG 3 cut(s) 269, 403, 1113
BstDSI CCRYGG 1 cut(s) 638
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 7 cut(s) 220, 470, 519, 667, 838, 875, 1110
BstKTI GATC 4 cut(s) 354, 361, 622, 652
BstMBI GATC 4 cut(s) 351, 358, 619, 649
BstMCI CGRYCG 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 996
BstPAI GACNNNNGTC 1 cut(s) 640
BstSCI CCNGG 3 cut(s) 396, 522, 523
BstSFI CTRYAG 1 cut(s) 425
BstSLI GKGCMC 1 cut(s) 766
BstV1I GCAGC 5 cut(s) 30, 255, 411, 601, 920
BstV2I GAAGAC 3 cut(s) 231, 506, 761
BstX2I RGATCY 2 cut(s) 619, 649
BstYI RGATCY 2 cut(s) 619, 649
Bsu15I ATCGAT 1 cut(s) 354
BsuRI GGCC 1 cut(s) 719
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 638
BtgZI GCGATG 1 cut(s) 571
BtsCI GGATG 7 cut(s) 220, 470, 519, 667, 838, 875, 1110
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 3 cut(s) 261, 315, 717
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 3 cut(s) 61, 635, 656
Cfr9I CCCGGG 1 cut(s) 523
ClaI ATCGAT 1 cut(s) 354
CseI GACGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 433
CspCI CAANNNNNGTGG 2 cut(s) 942, 977
CviAII CATG 6 cut(s) 53, 419, 457, 759, 968, 993
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 3 cut(s) 269, 403, 1113
DpnI GATC 4 cut(s) 353, 360, 621, 651
DpnII GATC 4 cut(s) 351, 358, 619, 649
DrdI GACNNNNNNGTC 1 cut(s) 671
DseDI GACNNNNNNGTC 1 cut(s) 671
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 3 cut(s) 135, 235, 814
EarI CTCTTC 3 cut(s) 135, 235, 814
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 802
Eco47I GGWCC 3 cut(s) 61, 635, 656
Eco57I CTGAAG 3 cut(s) 195, 371, 842
Eco88I CYCGRG 2 cut(s) 523, 668
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 6 cut(s) 56, 422, 460, 762, 971, 996
FaqI GGGAC 4 cut(s) 413, 429, 843, 978
FatI CATG 6 cut(s) 52, 418, 456, 758, 967, 992
Fnu4HI GCNGC 5 cut(s) 44, 244, 425, 590, 909
FokI GGATG 7 cut(s) 227, 477, 506, 674, 825, 862, 1117
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 5 cut(s) 44, 244, 425, 590, 909
GluI GCNGC 5 cut(s) 44, 244, 425, 590, 909
GsuI CTGGAG 1 cut(s) 761
HaeIII GGCC 1 cut(s) 719
HapII CCGG 4 cut(s) 314, 397, 524, 659
HgaI GACGC 1 cut(s) 338
Hin1II CATG 6 cut(s) 56, 422, 460, 762, 971, 996
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 3 cut(s) 227, 401, 1066
HpaII CCGG 4 cut(s) 314, 397, 524, 659
HphI GGTGA 3 cut(s) 128, 155, 994
Hpy166II GTNNAC 2 cut(s) 61, 306
Hpy188I TCNGA 4 cut(s) 406, 699, 818, 861
Hpy188III TCNNGA 3 cut(s) 268, 740, 1088
Hpy8I GTNNAC 2 cut(s) 61, 306
HpyAV CCTTC 3 cut(s) 170, 176, 258
HpyCH4III ACNGT 2 cut(s) 446, 639
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 4 cut(s) 19, 46, 344, 427
HpyF3I CTNAG 3 cut(s) 269, 403, 1113
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 6 cut(s) 56, 422, 460, 762, 971, 996
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 4 cut(s) 351, 358, 619, 649
LmnI GCTCC 3 cut(s) 586, 840, 923
Lsp1109I GCAGC 5 cut(s) 30, 255, 411, 601, 920
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 124
MalI GATC 4 cut(s) 353, 360, 621, 651
MboI GATC 4 cut(s) 351, 358, 619, 649
MflI RGATCY 2 cut(s) 619, 649
MhlI GDGCHC 2 cut(s) 766, 802
MlyI GAGTC 2 cut(s) 221, 395
MmeI TCCRAC 1 cut(s) 613
MroNI GCCGGC 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 2 cut(s) 195, 732
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 4 cut(s) 314, 397, 524, 659
MspR9I CCNGG 3 cut(s) 398, 524, 525
NaeI GCCGGC 1 cut(s) 315
NciI CCSGG 3 cut(s) 398, 524, 525
NdeII GATC 4 cut(s) 351, 358, 619, 649
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 6 cut(s) 56, 422, 460, 762, 971, 996
NlaIV GGNNCC 2 cut(s) 491, 942
NmeAIII GCCGAG 1 cut(s) 1061
NspI RCATGY 1 cut(s) 996
NspV TTCGAA 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 668
PcsI WCGNNNNNNNCGW 1 cut(s) 681
PdiI GCCGGC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 1066
PkrI GCNGC 5 cut(s) 45, 245, 426, 591, 910
PleI GAGTC 2 cut(s) 221, 395
PpsI GAGTC 2 cut(s) 221, 395
PshAI GACNNNNGTC 1 cut(s) 640
Psp1406I AACGTT 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 491, 942
PspPI GGNCC 3 cut(s) 61, 635, 656
PspXI VCTCGAGB 1 cut(s) 668
PstI CTGCAG 1 cut(s) 429
PsuI RGATCY 2 cut(s) 619, 649
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 195, 732
SatI GCNGC 5 cut(s) 44, 244, 425, 590, 909
Sau3AI GATC 4 cut(s) 351, 358, 619, 649
Sau96I GGNCC 3 cut(s) 61, 635, 656
SchI GAGTC 2 cut(s) 221, 395
ScrFI CCNGG 3 cut(s) 398, 524, 525
SduI GDGCHC 2 cut(s) 766, 802
SfcI CTRYAG 1 cut(s) 425
Sfr274I CTCGAG 1 cut(s) 668
SfuI TTCGAA 1 cut(s) 251
SinI GGWCC 3 cut(s) 61, 635, 656
SlaI CTCGAG 1 cut(s) 668
SmaI CCCGGG 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 494, 668
SmoI CTYRAG 2 cut(s) 494, 668
SsiI CCGC 2 cut(s) 91, 647
SspI AATATT 2 cut(s) 237, 576
StyD4I CCNGG 3 cut(s) 396, 522, 523
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 446, 639
TaiI ACGT 1 cut(s) 195
TaqI TCGA 9 cut(s) 66, 87, 251, 300, 354, 563, 669, 675, 1089
TatI WGTACW 1 cut(s) 432
TfiI GAWTC 1 cut(s) 1066
Tru1I TTAA 2 cut(s) 195, 732
Tru9I TTAA 2 cut(s) 195, 732
TscAI CASTG 1 cut(s) 351
TseI GCWGC 5 cut(s) 43, 243, 424, 589, 908
TspDTI ATGAA 3 cut(s) 69, 231, 473
TspGWI ACGGA 4 cut(s) 110, 290, 477, 989
TspMI CCCGGG 1 cut(s) 523
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 3 cut(s) 61, 635, 656
XagI CCTNNNNNAGG 1 cut(s) 174
XceI RCATGY 1 cut(s) 996
XhoI CTCGAG 1 cut(s) 668
XmaI CCCGGG 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.