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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 680, 1292 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 500, 1082 |
| AciI | CCGC | 2 cut(s) | 152, 1262 |
| AcoI | YGGCCR | 1 cut(s) | 900 |
| AcuI | CTGAAG | 3 cut(s) | 605, 744, 1004 |
| AfaI | GTAC | 1 cut(s) | 528 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 437, 500, 873, 874, 958, 1082 |
| AgsI | TTSAA | 5 cut(s) | 149, 236, 451, 568, 932 |
| AjnI | CCWGG | 2 cut(s) | 698, 708 |
| Alw21I | GWGCWC | 1 cut(s) | 257 |
| Alw26I | GTCTC | 3 cut(s) | 791, 926, 1127 |
| Alw44I | GTGCAC | 1 cut(s) | 253 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1121 |
| AoxI | GGCC | 1 cut(s) | 900 |
| ApaLI | GTGCAC | 1 cut(s) | 253 |
| ApeKI | GCWGC | 3 cut(s) | 244, 504, 1115 |
| AspS9I | GGNCC | 2 cut(s) | 623, 856 |
| AsuHPI | GGTGA | 5 cut(s) | 389, 416, 685, 806, 1156 |
| AvaII | GGWCC | 2 cut(s) | 623, 856 |
| BaeGI | GKGCMC | 2 cut(s) | 257, 683 |
| BanI | GGYRCC | 2 cut(s) | 680, 1292 |
| BanII | GRGCYC | 1 cut(s) | 964 |
| BbsI | GAAGAC | 2 cut(s) | 288, 492 |
| Bbv12I | GWGCWC | 1 cut(s) | 257 |
| BbvI | GCAGC | 3 cut(s) | 256, 516, 1127 |
| BccI | CCATC | 4 cut(s) | 772, 811, 892, 1224 |
| BciT130I | CCWGG | 2 cut(s) | 700, 710 |
| BcoDI | GTCTC | 3 cut(s) | 791, 926, 1127 |
| BfaI | CTAG | 2 cut(s) | 647, 830 |
| BfmI | CTRYAG | 1 cut(s) | 39 |
| BglII | AGATCT | 2 cut(s) | 533, 607 |
| BisI | GCNGC | 3 cut(s) | 245, 505, 1116 |
| BlsI | GCNGC | 3 cut(s) | 246, 506, 1117 |
| Bme1390I | CCNGG | 2 cut(s) | 700, 710 |
| Bme18I | GGWCC | 2 cut(s) | 623, 856 |
| BmgT120I | GGNCC | 2 cut(s) | 623, 856 |
| BmiI | GGNNCC | 4 cut(s) | 64, 682, 705, 1294 |
| BmrFI | CCNGG | 2 cut(s) | 700, 710 |
| BmsI | GCATC | 1 cut(s) | 44 |
| BpiI | GAAGAC | 2 cut(s) | 288, 492 |
| BpmI | CTGGAG | 1 cut(s) | 292 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaI | GGTCTC | 1 cut(s) | 926 |
| BsaJI | CCNNGG | 3 cut(s) | 626, 699, 708 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 437, 500, 873, 874, 958, 1082 |
| BseBI | CCWGG | 2 cut(s) | 700, 710 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 3 cut(s) | 626, 699, 708 |
| BseGI | GGATG | 2 cut(s) | 220, 670 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 437, 500, 873, 874, 958, 1082 |
| BseMII | CTCAG | 2 cut(s) | 274, 991 |
| BseRI | GAGGAG | 2 cut(s) | 151, 1220 |
| BseSI | GKGCMC | 2 cut(s) | 257, 683 |
| BseXI | GCAGC | 3 cut(s) | 256, 516, 1127 |
| BshFI | GGCC | 1 cut(s) | 902 |
| BshNI | GGYRCC | 2 cut(s) | 680, 1292 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiHKAI | GWGCWC | 1 cut(s) | 257 |
| BslFI | GGGAC | 3 cut(s) | 199, 796, 1140 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 437, 500, 873, 874, 958, 1082 |
| BsmAI | GTCTC | 3 cut(s) | 791, 926, 1127 |
| BsmBI | CGTCTC | 2 cut(s) | 791, 1127 |
| BsmFI | GGGAC | 3 cut(s) | 199, 796, 1140 |
| BsmI | GAATGC | 2 cut(s) | 178, 1264 |
| BsnI | GGCC | 1 cut(s) | 902 |
| Bso31I | GGTCTC | 1 cut(s) | 926 |
| Bsp1286I | GDGCHC | 3 cut(s) | 257, 683, 964 |
| Bsp143I | GATC | 2 cut(s) | 533, 607 |
| BspACI | CCGC | 2 cut(s) | 152, 1262 |
| BspANI | GGCC | 1 cut(s) | 902 |
| BspCNI | CTCAG | 2 cut(s) | 273, 990 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspLI | GGNNCC | 4 cut(s) | 64, 682, 705, 1294 |
| BspT107I | GGYRCC | 2 cut(s) | 680, 1292 |
| BspTNI | GGTCTC | 1 cut(s) | 926 |
| BssECI | CCNNGG | 3 cut(s) | 626, 699, 708 |
| BssMI | GATC | 2 cut(s) | 533, 607 |
| Bst2UI | CCWGG | 2 cut(s) | 700, 710 |
| Bst4CI | ACNGT | 3 cut(s) | 415, 627, 1123 |
| Bst6I | CTCTTC | 4 cut(s) | 12, 128, 720, 1248 |
| BstC8I | GCNNGC | 5 cut(s) | 522, 576, 603, 715, 840 |
| BstDEI | CTNAG | 4 cut(s) | 228, 260, 530, 977 |
| BstDSI | CCRYGG | 1 cut(s) | 626 |
| BstEII | GGTNACC | 1 cut(s) | 1144 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 435 |
| BstF5I | GGATG | 2 cut(s) | 220, 670 |
| BstKTI | GATC | 2 cut(s) | 536, 610 |
| BstMAI | GTCTC | 3 cut(s) | 791, 926, 1127 |
| BstMBI | GATC | 2 cut(s) | 533, 607 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 310, 687, 719, 835 |
| BstNI | CCWGG | 2 cut(s) | 700, 710 |
| BstPI | GGTNACC | 1 cut(s) | 1144 |
| BstSCI | CCNGG | 2 cut(s) | 698, 708 |
| BstSFI | CTRYAG | 1 cut(s) | 39 |
| BstSLI | GKGCMC | 2 cut(s) | 257, 683 |
| BstV1I | GCAGC | 3 cut(s) | 256, 516, 1127 |
| BstV2I | GAAGAC | 2 cut(s) | 288, 492 |
| BstX2I | RGATCY | 2 cut(s) | 533, 607 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 817 |
| BstYI | RGATCY | 2 cut(s) | 533, 607 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 1 cut(s) | 902 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 1 cut(s) | 626 |
| BtsCI | GGATG | 2 cut(s) | 220, 670 |
| BtsIMutI | CAGTG | 2 cut(s) | 778, 1119 |
| Cac8I | GCNNGC | 5 cut(s) | 522, 576, 603, 715, 840 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1121 |
| Cfr13I | GGNCC | 2 cut(s) | 623, 856 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CseI | GACGC | 1 cut(s) | 599 |
| Csp6I | GTAC | 1 cut(s) | 527 |
| CviAII | CATG | 5 cut(s) | 314, 1130, 1168, 1178, 1237 |
| CviQI | GTAC | 1 cut(s) | 527 |
| DdeI | CTNAG | 4 cut(s) | 228, 260, 530, 977 |
| DpnI | GATC | 2 cut(s) | 535, 609 |
| DpnII | GATC | 2 cut(s) | 533, 607 |
| DraI | TTTAAA | 1 cut(s) | 513 |
| EaeI | YGGCCR | 1 cut(s) | 900 |
| Eam1104I | CTCTTC | 4 cut(s) | 12, 128, 720, 1248 |
| EarI | CTCTTC | 4 cut(s) | 12, 128, 720, 1248 |
| Eco24I | GRGCYC | 1 cut(s) | 964 |
| Eco31I | GGTCTC | 1 cut(s) | 926 |
| Eco47I | GGWCC | 2 cut(s) | 623, 856 |
| Eco57I | CTGAAG | 3 cut(s) | 605, 744, 1004 |
| Eco91I | GGTNACC | 1 cut(s) | 1144 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 435 |
| EcoO109I | RGGNCCY | 1 cut(s) | 856 |
| EcoO65I | GGTNACC | 1 cut(s) | 1144 |
| EcoRII | CCWGG | 2 cut(s) | 698, 708 |
| EcoT38I | GRGCYC | 1 cut(s) | 964 |
| Esp3I | CGTCTC | 2 cut(s) | 791, 1127 |
| FaeI | CATG | 5 cut(s) | 317, 1133, 1171, 1181, 1240 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1203, 1235 |
| FaqI | GGGAC | 3 cut(s) | 199, 796, 1140 |
| FatI | CATG | 5 cut(s) | 313, 1129, 1167, 1177, 1236 |
| Fnu4HI | GCNGC | 3 cut(s) | 245, 505, 1116 |
| FokI | GGATG | 2 cut(s) | 227, 677 |
| FriOI | GRGCYC | 1 cut(s) | 964 |
| Fsp4HI | GCNGC | 3 cut(s) | 245, 505, 1116 |
| FspBI | CTAG | 2 cut(s) | 647, 830 |
| GluI | GCNGC | 3 cut(s) | 245, 505, 1116 |
| GsuI | CTGGAG | 1 cut(s) | 292 |
| HaeIII | GGCC | 1 cut(s) | 902 |
| HgaI | GACGC | 1 cut(s) | 599 |
| Hin1II | CATG | 5 cut(s) | 317, 1133, 1171, 1181, 1240 |
| HindIII | AAGCTT | 1 cut(s) | 688 |
| HinfI | GANTC | 3 cut(s) | 92, 488, 695 |
| HphI | GGTGA | 5 cut(s) | 389, 416, 685, 806, 1156 |
| Hpy166II | GTNNAC | 4 cut(s) | 255, 457, 630, 1234 |
| Hpy188I | TCNGA | 3 cut(s) | 67, 538, 980 |
| Hpy188III | TCNNGA | 3 cut(s) | 271, 923, 1220 |
| Hpy8I | GTNNAC | 4 cut(s) | 255, 457, 630, 1234 |
| Hpy99I | CGWCG | 1 cut(s) | 908 |
| HpyAV | CCTTC | 9 cut(s) | 41, 190, 205, 277, 431, 437, 580, 670, 982 |
| HpyCH4III | ACNGT | 3 cut(s) | 415, 627, 1123 |
| HpyCH4V | TGCA | 3 cut(s) | 176, 255, 1115 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 310, 687, 719, 835 |
| HpyF3I | CTNAG | 4 cut(s) | 228, 260, 530, 977 |
| Hsp92II | CATG | 5 cut(s) | 317, 1133, 1171, 1181, 1240 |
| Kzo9I | GATC | 2 cut(s) | 533, 607 |
| LmnI | GCTCC | 1 cut(s) | 1085 |
| Lsp1109I | GCAGC | 3 cut(s) | 256, 516, 1127 |
| LweI | GCATC | 1 cut(s) | 44 |
| MaeI | CTAG | 2 cut(s) | 647, 830 |
| MaeIII | GTNAC | 1 cut(s) | 1144 |
| MalI | GATC | 2 cut(s) | 535, 609 |
| MboI | GATC | 2 cut(s) | 533, 607 |
| MfeI | CAATTG | 2 cut(s) | 364, 789 |
| MflI | RGATCY | 2 cut(s) | 533, 607 |
| MhlI | GDGCHC | 3 cut(s) | 257, 683, 964 |
| MluCI | AATT | 7 cut(s) | 86, 109, 364, 393, 495, 558, 789 |
| MlyI | GAGTC | 2 cut(s) | 482, 689 |
| MseI | TTAA | 2 cut(s) | 512, 915 |
| MspR9I | CCNGG | 2 cut(s) | 700, 710 |
| MunI | CAATTG | 2 cut(s) | 364, 789 |
| Mva1269I | GAATGC | 2 cut(s) | 178, 1264 |
| MvaI | CCWGG | 2 cut(s) | 700, 710 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 310, 687, 719, 835 |
| NdeII | GATC | 2 cut(s) | 533, 607 |
| NlaIII | CATG | 5 cut(s) | 317, 1133, 1171, 1181, 1240 |
| NlaIV | GGNNCC | 4 cut(s) | 64, 682, 705, 1294 |
| NmuCI | GTSAC | 1 cut(s) | 1144 |
| PctI | GAATGC | 2 cut(s) | 178, 1264 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 500, 1082 |
| PkrI | GCNGC | 3 cut(s) | 246, 506, 1117 |
| PleI | GAGTC | 2 cut(s) | 482, 689 |
| PpsI | GAGTC | 2 cut(s) | 482, 689 |
| PpuMI | RGGWCCY | 1 cut(s) | 856 |
| Psp5II | RGGWCCY | 1 cut(s) | 856 |
| Psp6I | CCWGG | 2 cut(s) | 698, 708 |
| PspEI | GGTNACC | 1 cut(s) | 1144 |
| PspGI | CCWGG | 2 cut(s) | 698, 708 |
| PspN4I | GGNNCC | 4 cut(s) | 64, 682, 705, 1294 |
| PspPI | GGNCC | 2 cut(s) | 623, 856 |
| PspPPI | RGGWCCY | 1 cut(s) | 856 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1121 |
| PsuI | RGATCY | 2 cut(s) | 533, 607 |
| RsaI | GTAC | 1 cut(s) | 528 |
| RsaNI | GTAC | 1 cut(s) | 527 |
| SaqAI | TTAA | 2 cut(s) | 512, 915 |
| SatI | GCNGC | 3 cut(s) | 245, 505, 1116 |
| Sau3AI | GATC | 2 cut(s) | 533, 607 |
| Sau96I | GGNCC | 2 cut(s) | 623, 856 |
| SchI | GAGTC | 2 cut(s) | 482, 689 |
| ScrFI | CCNGG | 2 cut(s) | 700, 710 |
| SduI | GDGCHC | 3 cut(s) | 257, 683, 964 |
| SfaNI | GCATC | 1 cut(s) | 44 |
| SfcI | CTRYAG | 1 cut(s) | 39 |
| SinI | GGWCC | 2 cut(s) | 623, 856 |
| Sse9I | AATT | 7 cut(s) | 86, 109, 364, 393, 495, 558, 789 |
| SsiI | CCGC | 2 cut(s) | 152, 1262 |
| SspMI | CTAG | 2 cut(s) | 647, 830 |
| StyD4I | CCNGG | 2 cut(s) | 698, 708 |
| TaaI | ACNGT | 3 cut(s) | 415, 627, 1123 |
| TaqI | TCGA | 4 cut(s) | 27, 348, 693, 924 |
| TasI | AATT | 7 cut(s) | 86, 109, 364, 393, 495, 558, 789 |
| TatI | WGTACW | 1 cut(s) | 526 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| Tru1I | TTAA | 2 cut(s) | 512, 915 |
| Tru9I | TTAA | 2 cut(s) | 512, 915 |
| TscAI | CASTG | 2 cut(s) | 778, 1126 |
| TseFI | GTSAC | 1 cut(s) | 1144 |
| TseI | GCWGC | 3 cut(s) | 244, 504, 1115 |
| Tsp45I | GTSAC | 1 cut(s) | 1144 |
| TspDTI | ATGAA | 4 cut(s) | 45, 330, 1194, 1266 |
| TspGWI | ACGGA | 2 cut(s) | 610, 1151 |
| TspRI | CASTG | 2 cut(s) | 778, 1126 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 500, 1082 |
| VneI | GTGCAC | 1 cut(s) | 253 |
| VpaK11BI | GGWCC | 2 cut(s) | 623, 856 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 435 |
| XspI | CTAG | 2 cut(s) | 647, 830 |