Rmu_sc0004277.1_g000079

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004277.1
OG0000060
Physical Location & Seq
Reverse (-)
279793 .. 280299
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004277.1_g000079.1.cds

Sequence Viewer

Length: 414 bp
atgttagaaggtttgattataatgatcattttggtttcatttctgcacagaatggcgagaccaagattcaaccttttgagtgattctgaagaagatgtgcgcagttctgagagctccgatcaagaatgtgatgaacaagaagacaataatgaagattctgaacaatcaattgcagaagaatcagaatctgaggacgaacagacaacgaaaaggttcgaaatgagaccaagacaacagcagaagaagaagacacttaaagaagaagaagatagtgacttagatgaacaagagtcaaagaaaagaagaaaagtgcaacaaccgaagagtaaagggaagaagccaaagaagggcaccaagaagcaggaagggaagaagaacgaggtccaaaaagctaagattgactggaagcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

16.17

Weight (kDa)

5.48

Isoelectric Point (pI)

85.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 20
Acc16I TGCGCA 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 2 cut(s) 114, 392
AluI AGCT 2 cut(s) 114, 392
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 2 cut(s) 52, 217
AlwNI CAGNNNCTG 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 382
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 353
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 147, 254
Bbv12I GWGCWC 1 cut(s) 116
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 2 cut(s) 52, 217
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 352
BpiI GAAGAC 2 cut(s) 147, 254
Bpu14I TTCGAA 1 cut(s) 216
BsaI GGTCTC 2 cut(s) 52, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 407
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 99, 180
BseNI ACTGG 1 cut(s) 407
BseSI GKGCMC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 2 cut(s) 52, 217
Bso31I GGTCTC 2 cut(s) 52, 217
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 2 cut(s) 116, 353
Bsp143I GATC 2 cut(s) 24, 118
BspCNI CTCAG 2 cut(s) 100, 181
BspLI GGNNCC 1 cut(s) 352
BspT104I TTCGAA 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 350
BspTNI GGTCTC 2 cut(s) 52, 217
BsrI ACTGG 1 cut(s) 407
BssMI GATC 2 cut(s) 24, 118
Bst6I CTCTTC 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 216
BstDEI CTNAG 4 cut(s) 108, 189, 277, 393
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 2 cut(s) 27, 121
BstMAI GTCTC 2 cut(s) 52, 217
BstMBI GATC 2 cut(s) 24, 118
BstSLI GKGCMC 1 cut(s) 353
BstV2I GAAGAC 2 cut(s) 147, 254
CaiI CAGNNNCTG 1 cut(s) 188
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 382
CviJI RGCY 3 cut(s) 114, 340, 392
CviKI_1 RGCY 3 cut(s) 114, 340, 392
DdeI CTNAG 4 cut(s) 108, 189, 277, 393
DpnI GATC 2 cut(s) 26, 120
DpnII GATC 2 cut(s) 24, 118
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Ecl136II GAGCTC 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 116
Eco31I GGTCTC 2 cut(s) 52, 217
Eco47I GGWCC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 116
FaiI YATR 1 cut(s) 20
FbaI TGATCA 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 116
FspI TGCGCA 1 cut(s) 101
GlaI GCGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 102
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 6 cut(s) 66, 83, 155, 179, 185, 290
Hpy188I TCNGA 6 cut(s) 88, 109, 118, 160, 184, 190
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 340, 359
HpyCH4V TGCA 3 cut(s) 46, 173, 313
HpyF3I CTNAG 4 cut(s) 108, 189, 277, 393
HspAI GCGC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 2 cut(s) 24, 118
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 2 cut(s) 347, 388
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 26, 120
MboI GATC 2 cut(s) 24, 118
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 2 cut(s) 116, 353
MluCI AATT 1 cut(s) 168
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 2 cut(s) 184, 373
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 1 cut(s) 255
MunI CAATTG 1 cut(s) 168
NdeII GATC 2 cut(s) 24, 118
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 272
NsbI TGCGCA 1 cut(s) 101
NspV TTCGAA 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 5 cut(s) 66, 83, 155, 179, 185
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PsiI TTATAA 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 188
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 255
Sau3AI GATC 2 cut(s) 24, 118
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 1 cut(s) 299
SduI GDGCHC 2 cut(s) 116, 353
SetI ASST 6 cut(s) 13, 75, 116, 215, 384, 394
SfuI TTCGAA 1 cut(s) 216
SgeI CNNG 9 cut(s) 69, 75, 134, 149, 240, 299, 367, 374, 391
SinI GGWCC 1 cut(s) 382
Sse9I AATT 1 cut(s) 168
SstI GAGCTC 1 cut(s) 116
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 168
TfiI GAWTC 5 cut(s) 66, 83, 155, 179, 185
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseFI GTSAC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 4 cut(s) 27, 147, 165, 297
VpaK11BI GGWCC 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.