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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 386 |
| AccII | CGCG | 1 cut(s) | 314 |
| AciI | CCGC | 1 cut(s) | 314 |
| AclWI | GGATC | 1 cut(s) | 229 |
| AcuI | CTGAAG | 1 cut(s) | 260 |
| AfaI | GTAC | 1 cut(s) | 111 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 92 |
| AgsI | TTSAA | 2 cut(s) | 80, 153 |
| AluBI | AGCT | 2 cut(s) | 68, 191 |
| AluI | AGCT | 2 cut(s) | 68, 191 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw44I | GTGCAC | 1 cut(s) | 344 |
| AlwI | GGATC | 1 cut(s) | 229 |
| ApaLI | GTGCAC | 1 cut(s) | 344 |
| ApeKI | GCWGC | 2 cut(s) | 65, 269 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 197, 229 |
| AspS9I | GGNCC | 1 cut(s) | 118 |
| AvaII | GGWCC | 1 cut(s) | 118 |
| AxyI | CCTNAGG | 1 cut(s) | 87 |
| BaeGI | GKGCMC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 1 cut(s) | 248 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BbvI | GCAGC | 2 cut(s) | 77, 256 |
| BccI | CCATC | 3 cut(s) | 13, 121, 436 |
| BceAI | ACGGC | 1 cut(s) | 282 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 96, 130 |
| BfmI | CTRYAG | 1 cut(s) | 326 |
| BisI | GCNGC | 3 cut(s) | 66, 270, 315 |
| BlsI | GCNGC | 3 cut(s) | 67, 271, 316 |
| Bme18I | GGWCC | 1 cut(s) | 118 |
| BmgT120I | GGNCC | 1 cut(s) | 118 |
| BmiI | GGNNCC | 1 cut(s) | 120 |
| BpiI | GAAGAC | 1 cut(s) | 248 |
| BsaAI | YACGTR | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 1 cut(s) | 123 |
| BsaWI | WCCGGW | 1 cut(s) | 229 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 92 |
| Bse1I | ACTGG | 1 cut(s) | 63 |
| Bse21I | CCTNAGG | 1 cut(s) | 87 |
| BseDI | CCNNGG | 1 cut(s) | 123 |
| BseGI | GGATG | 1 cut(s) | 454 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 92 |
| BseMII | CTCAG | 1 cut(s) | 78 |
| BseNI | ACTGG | 1 cut(s) | 63 |
| BseSI | GKGCMC | 1 cut(s) | 348 |
| BseXI | GCAGC | 2 cut(s) | 77, 256 |
| BsgI | GTGCAG | 1 cut(s) | 255 |
| Bsh1236I | CGCG | 1 cut(s) | 314 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BsiSI | CCGG | 1 cut(s) | 230 |
| BslFI | GGGAC | 1 cut(s) | 104 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 92 |
| BsmFI | GGGAC | 1 cut(s) | 104 |
| BsmI | GAATGC | 1 cut(s) | 148 |
| Bsp1286I | GDGCHC | 1 cut(s) | 348 |
| Bsp143I | GATC | 2 cut(s) | 37, 234 |
| BspACI | CCGC | 1 cut(s) | 314 |
| BspCNI | CTCAG | 1 cut(s) | 79 |
| BspFNI | CGCG | 1 cut(s) | 314 |
| BspLI | GGNNCC | 1 cut(s) | 120 |
| BspMAI | CTGCAG | 1 cut(s) | 330 |
| BspPI | GGATC | 1 cut(s) | 229 |
| BsrI | ACTGG | 1 cut(s) | 63 |
| BssECI | CCNNGG | 1 cut(s) | 123 |
| BssMI | GATC | 2 cut(s) | 37, 234 |
| BssNAI | GTATAC | 1 cut(s) | 387 |
| BssT1I | CCWWGG | 1 cut(s) | 123 |
| Bst1107I | GTATAC | 1 cut(s) | 387 |
| Bst4CI | ACNGT | 2 cut(s) | 76, 139 |
| BstBAI | YACGTR | 1 cut(s) | 459 |
| BstDEI | CTNAG | 2 cut(s) | 69, 87 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 90 |
| BstF5I | GGATG | 1 cut(s) | 454 |
| BstFNI | CGCG | 1 cut(s) | 314 |
| BstKTI | GATC | 2 cut(s) | 40, 237 |
| BstMBI | GATC | 2 cut(s) | 37, 234 |
| BstNSI | RCATGY | 1 cut(s) | 148 |
| BstSFI | CTRYAG | 1 cut(s) | 326 |
| BstSLI | GKGCMC | 1 cut(s) | 348 |
| BstUI | CGCG | 1 cut(s) | 314 |
| BstV1I | GCAGC | 2 cut(s) | 77, 256 |
| BstV2I | GAAGAC | 1 cut(s) | 248 |
| BstX2I | RGATCY | 1 cut(s) | 234 |
| BstYI | RGATCY | 1 cut(s) | 234 |
| BstZ17I | GTATAC | 1 cut(s) | 387 |
| Bsu36I | CCTNAGG | 1 cut(s) | 87 |
| BtsCI | GGATG | 1 cut(s) | 454 |
| Cfr13I | GGNCC | 1 cut(s) | 118 |
| CseI | GACGC | 1 cut(s) | 14 |
| Csp6I | GTAC | 1 cut(s) | 110 |
| CviAII | CATG | 1 cut(s) | 145 |
| CviJI | RGCY | 6 cut(s) | 68, 85, 191, 269, 283, 406 |
| CviKI_1 | RGCY | 6 cut(s) | 68, 85, 191, 269, 283, 406 |
| CviQI | GTAC | 1 cut(s) | 110 |
| DdeI | CTNAG | 2 cut(s) | 69, 87 |
| DpnI | GATC | 2 cut(s) | 39, 236 |
| DpnII | GATC | 2 cut(s) | 37, 234 |
| Eco130I | CCWWGG | 1 cut(s) | 123 |
| Eco47I | GGWCC | 1 cut(s) | 118 |
| Eco57I | CTGAAG | 1 cut(s) | 260 |
| Eco81I | CCTNAGG | 1 cut(s) | 87 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 90 |
| EcoT14I | CCWWGG | 1 cut(s) | 123 |
| EcoT22I | ATGCAT | 1 cut(s) | 150 |
| ErhI | CCWWGG | 1 cut(s) | 123 |
| FaeI | CATG | 1 cut(s) | 148 |
| FaiI | YATR | 4 cut(s) | 146, 222, 249, 387 |
| FaqI | GGGAC | 1 cut(s) | 104 |
| FatI | CATG | 1 cut(s) | 144 |
| FblI | GTMKAC | 1 cut(s) | 386 |
| Fnu4HI | GCNGC | 3 cut(s) | 66, 270, 315 |
| Fsp4HI | GCNGC | 3 cut(s) | 66, 270, 315 |
| GluI | GCNGC | 3 cut(s) | 66, 270, 315 |
| HapII | CCGG | 1 cut(s) | 230 |
| HgaI | GACGC | 1 cut(s) | 14 |
| Hin1II | CATG | 1 cut(s) | 148 |
| HincII | GTYRAC | 1 cut(s) | 142 |
| HindII | GTYRAC | 1 cut(s) | 142 |
| HinfI | GANTC | 1 cut(s) | 23 |
| HpaII | CCGG | 1 cut(s) | 230 |
| Hpy166II | GTNNAC | 3 cut(s) | 142, 346, 387 |
| Hpy188I | TCNGA | 1 cut(s) | 18 |
| Hpy188III | TCNNGA | 2 cut(s) | 157, 238 |
| Hpy8I | GTNNAC | 3 cut(s) | 142, 346, 387 |
| HpyAV | CCTTC | 1 cut(s) | 190 |
| HpyCH4III | ACNGT | 2 cut(s) | 76, 139 |
| HpyCH4IV | ACGT | 1 cut(s) | 458 |
| HpyCH4V | TGCA | 5 cut(s) | 148, 272, 328, 346, 358 |
| HpyF3I | CTNAG | 2 cut(s) | 69, 87 |
| HpySE526I | ACGT | 1 cut(s) | 458 |
| Hsp92II | CATG | 1 cut(s) | 148 |
| Kzo9I | GATC | 2 cut(s) | 37, 234 |
| LpnPI | CCDG | 8 cut(s) | 44, 78, 99, 243, 251, 260, 420, 440 |
| Lsp1109I | GCAGC | 2 cut(s) | 77, 256 |
| MaeII | ACGT | 1 cut(s) | 458 |
| MalI | GATC | 2 cut(s) | 39, 236 |
| MboI | GATC | 2 cut(s) | 37, 234 |
| MboII | GAAGA | 3 cut(s) | 142, 253, 270 |
| MflI | RGATCY | 1 cut(s) | 234 |
| MhlI | GDGCHC | 1 cut(s) | 348 |
| MluCI | AATT | 3 cut(s) | 42, 373, 431 |
| MnlI | CCTC | 2 cut(s) | 82, 153 |
| Mph1103I | ATGCAT | 1 cut(s) | 150 |
| MseI | TTAA | 1 cut(s) | 401 |
| MspA1I | CMGCKG | 1 cut(s) | 191 |
| MspI | CCGG | 1 cut(s) | 230 |
| Mva1269I | GAATGC | 1 cut(s) | 148 |
| MvnI | CGCG | 1 cut(s) | 314 |
| NdeII | GATC | 2 cut(s) | 37, 234 |
| NlaIII | CATG | 1 cut(s) | 148 |
| NlaIV | GGNNCC | 1 cut(s) | 120 |
| NsiI | ATGCAT | 1 cut(s) | 150 |
| NspI | RCATGY | 1 cut(s) | 148 |
| PctI | GAATGC | 1 cut(s) | 148 |
| PfeI | GAWTC | 1 cut(s) | 23 |
| PkrI | GCNGC | 3 cut(s) | 67, 271, 316 |
| Ppu21I | YACGTR | 1 cut(s) | 459 |
| PspN4I | GGNNCC | 1 cut(s) | 120 |
| PspPI | GGNCC | 1 cut(s) | 118 |
| PstI | CTGCAG | 1 cut(s) | 330 |
| PsuI | RGATCY | 1 cut(s) | 234 |
| PvuII | CAGCTG | 1 cut(s) | 191 |
| RsaI | GTAC | 1 cut(s) | 111 |
| RsaNI | GTAC | 1 cut(s) | 110 |
| SaqAI | TTAA | 1 cut(s) | 401 |
| SatI | GCNGC | 3 cut(s) | 66, 270, 315 |
| Sau3AI | GATC | 2 cut(s) | 37, 234 |
| Sau96I | GGNCC | 1 cut(s) | 118 |
| SduI | GDGCHC | 1 cut(s) | 348 |
| SetI | ASST | 3 cut(s) | 70, 193, 461 |
| SfcI | CTRYAG | 1 cut(s) | 326 |
| SinI | GGWCC | 1 cut(s) | 118 |
| Sse9I | AATT | 3 cut(s) | 42, 373, 431 |
| SsiI | CCGC | 1 cut(s) | 314 |
| StyI | CCWWGG | 1 cut(s) | 123 |
| TaaI | ACNGT | 2 cut(s) | 76, 139 |
| TaiI | ACGT | 1 cut(s) | 461 |
| TaqI | TCGA | 2 cut(s) | 50, 156 |
| TaqII | GACCGA | 1 cut(s) | 106 |
| TasI | AATT | 3 cut(s) | 42, 373, 431 |
| TauI | GCSGC | 1 cut(s) | 317 |
| TfiI | GAWTC | 1 cut(s) | 23 |
| Tru1I | TTAA | 1 cut(s) | 401 |
| Tru9I | TTAA | 1 cut(s) | 401 |
| TseI | GCWGC | 2 cut(s) | 65, 269 |
| VneI | GTGCAC | 1 cut(s) | 344 |
| VpaK11BI | GGWCC | 1 cut(s) | 118 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 90 |
| XceI | RCATGY | 1 cut(s) | 148 |
| XmiI | GTMKAC | 1 cut(s) | 386 |
| Zsp2I | ATGCAT | 1 cut(s) | 150 |