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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 680 |
| AatII | GACGTC | 1 cut(s) | 569 |
| Acc16I | TGCGCA | 1 cut(s) | 282 |
| Acc65I | GGTACC | 1 cut(s) | 118 |
| AccB1I | GGYRCC | 1 cut(s) | 118 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 500 |
| AccI | GTMKAC | 1 cut(s) | 551 |
| AccIII | TCCGGA | 1 cut(s) | 775 |
| AciI | CCGC | 2 cut(s) | 352, 542 |
| AclWI | GGATC | 1 cut(s) | 30 |
| AcsI | RAATTY | 1 cut(s) | 327 |
| AcyI | GRCGYC | 1 cut(s) | 566 |
| AfaI | GTAC | 3 cut(s) | 120, 383, 594 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 373, 500, 512 |
| AgsI | TTSAA | 3 cut(s) | 347, 395, 451 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 509 |
| AluBI | AGCT | 3 cut(s) | 76, 667, 833 |
| AluI | AGCT | 3 cut(s) | 76, 667, 833 |
| AlwI | GGATC | 1 cut(s) | 30 |
| Aor13HI | TCCGGA | 1 cut(s) | 775 |
| AoxI | GGCC | 1 cut(s) | 354 |
| ApeKI | GCWGC | 3 cut(s) | 533, 631, 821 |
| ApoI | RAATTY | 1 cut(s) | 327 |
| Asp718I | GGTACC | 1 cut(s) | 118 |
| AspLEI | GCGC | 1 cut(s) | 283 |
| AspS9I | GGNCC | 6 cut(s) | 38, 271, 354, 412, 463, 503 |
| AsuHPI | GGTGA | 2 cut(s) | 221, 574 |
| AvaII | GGWCC | 5 cut(s) | 38, 271, 412, 463, 503 |
| BanI | GGYRCC | 1 cut(s) | 118 |
| BbsI | GAAGAC | 2 cut(s) | 72, 812 |
| BbvCI | CCTCAGC | 1 cut(s) | 693 |
| BbvI | GCAGC | 3 cut(s) | 545, 643, 808 |
| BccI | CCATC | 2 cut(s) | 187, 534 |
| BceAI | ACGGC | 2 cut(s) | 2, 600 |
| BfaI | CTAG | 1 cut(s) | 834 |
| BisI | GCNGC | 3 cut(s) | 534, 632, 822 |
| BlsI | GCNGC | 3 cut(s) | 535, 633, 823 |
| Bme18I | GGWCC | 5 cut(s) | 38, 271, 412, 463, 503 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 509 |
| BmgT120I | GGNCC | 6 cut(s) | 38, 271, 354, 412, 463, 503 |
| BmiI | GGNNCC | 3 cut(s) | 39, 120, 414 |
| BmrI | ACTGGG | 1 cut(s) | 124 |
| BmsI | GCATC | 2 cut(s) | 649, 696 |
| BmuI | ACTGGG | 1 cut(s) | 124 |
| BoxI | GACNNNNGTC | 1 cut(s) | 43 |
| BpiI | GAAGAC | 2 cut(s) | 72, 812 |
| Bpu10I | CCTNAGC | 1 cut(s) | 693 |
| BpuEI | CTTGAG | 1 cut(s) | 455 |
| BsaBI | GATNNNNATC | 1 cut(s) | 489 |
| BsaHI | GRCGYC | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 3 cut(s) | 18, 41, 204 |
| BsaWI | WCCGGW | 1 cut(s) | 775 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 227, 257 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 373, 500, 512 |
| Bse1I | ACTGG | 4 cut(s) | 66, 119, 129, 537 |
| Bse3DI | GCAATG | 2 cut(s) | 652, 687 |
| Bse8I | GATNNNNATC | 1 cut(s) | 489 |
| BseAI | TCCGGA | 1 cut(s) | 775 |
| BseDI | CCNNGG | 3 cut(s) | 18, 41, 204 |
| BseGI | GGATG | 2 cut(s) | 490, 595 |
| BseJI | GATNNNNATC | 1 cut(s) | 489 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 373, 500, 512 |
| BseMI | GCAATG | 2 cut(s) | 652, 687 |
| BseMII | CTCAG | 2 cut(s) | 299, 684 |
| BseNI | ACTGG | 4 cut(s) | 66, 119, 129, 537 |
| BseXI | GCAGC | 3 cut(s) | 545, 643, 808 |
| BseYI | CCCAGC | 2 cut(s) | 76, 663 |
| BsgI | GTGCAG | 1 cut(s) | 110 |
| Bsh1285I | CGRYCG | 1 cut(s) | 555 |
| BshFI | GGCC | 1 cut(s) | 356 |
| BshNI | GGYRCC | 1 cut(s) | 118 |
| BsiEI | CGRYCG | 1 cut(s) | 555 |
| BsiSI | CCGG | 1 cut(s) | 776 |
| BslFI | GGGAC | 3 cut(s) | 51, 398, 754 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 373, 500, 512 |
| BsmFI | GGGAC | 3 cut(s) | 51, 398, 754 |
| BsnI | GGCC | 1 cut(s) | 356 |
| Bsp13I | TCCGGA | 1 cut(s) | 775 |
| Bsp1407I | TGTACA | 1 cut(s) | 381 |
| Bsp143I | GATC | 1 cut(s) | 22 |
| Bsp19I | CCATGG | 2 cut(s) | 41, 204 |
| BspACI | CCGC | 2 cut(s) | 352, 542 |
| BspANI | GGCC | 1 cut(s) | 356 |
| BspCNI | CTCAG | 2 cut(s) | 300, 685 |
| BspEI | TCCGGA | 1 cut(s) | 775 |
| BspLI | GGNNCC | 3 cut(s) | 39, 120, 414 |
| BspPI | GGATC | 1 cut(s) | 30 |
| BspQI | GCTCTTC | 1 cut(s) | 135 |
| BspT107I | GGYRCC | 1 cut(s) | 118 |
| BsrDI | GCAATG | 2 cut(s) | 652, 687 |
| BsrGI | TGTACA | 1 cut(s) | 381 |
| BsrI | ACTGG | 4 cut(s) | 66, 119, 129, 537 |
| BssECI | CCNNGG | 3 cut(s) | 18, 41, 204 |
| BssMI | GATC | 1 cut(s) | 22 |
| BssNI | GRCGYC | 1 cut(s) | 566 |
| BssT1I | CCWWGG | 2 cut(s) | 41, 204 |
| Bst4CI | ACNGT | 1 cut(s) | 562 |
| Bst6I | CTCTTC | 1 cut(s) | 135 |
| BstACI | GRCGYC | 1 cut(s) | 566 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 539 |
| BstAUI | TGTACA | 1 cut(s) | 381 |
| BstC8I | GCNNGC | 2 cut(s) | 130, 354 |
| BstDEI | CTNAG | 3 cut(s) | 13, 308, 693 |
| BstDSI | CCRYGG | 3 cut(s) | 18, 41, 204 |
| BstF5I | GGATG | 2 cut(s) | 490, 595 |
| BstHHI | GCGC | 1 cut(s) | 283 |
| BstKTI | GATC | 1 cut(s) | 25 |
| BstMBI | GATC | 1 cut(s) | 22 |
| BstMCI | CGRYCG | 1 cut(s) | 555 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 134, 254, 539, 830 |
| BstNSI | RCATGY | 1 cut(s) | 749 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 43 |
| BstV1I | GCAGC | 3 cut(s) | 545, 643, 808 |
| BstV2I | GAAGAC | 2 cut(s) | 72, 812 |
| BstX2I | RGATCY | 1 cut(s) | 22 |
| BstYI | RGATCY | 1 cut(s) | 22 |
| BsuRI | GGCC | 1 cut(s) | 356 |
| BtgI | CCRYGG | 3 cut(s) | 18, 41, 204 |
| BtgZI | GCGATG | 1 cut(s) | 96 |
| BtsCI | GGATG | 2 cut(s) | 490, 595 |
| BtsIMutI | CAGTG | 2 cut(s) | 122, 544 |
| Cac8I | GCNNGC | 2 cut(s) | 130, 354 |
| CfoI | GCGC | 1 cut(s) | 283 |
| Cfr13I | GGNCC | 6 cut(s) | 38, 271, 354, 412, 463, 503 |
| CseI | GACGC | 1 cut(s) | 499 |
| Csp6I | GTAC | 3 cut(s) | 119, 382, 593 |
| CviAII | CATG | 6 cut(s) | 42, 205, 470, 530, 641, 746 |
| CviQI | GTAC | 3 cut(s) | 119, 382, 593 |
| DdeI | CTNAG | 3 cut(s) | 13, 308, 693 |
| DpnI | GATC | 1 cut(s) | 24 |
| DpnII | GATC | 1 cut(s) | 22 |
| DriI | GACNNNNNGTC | 1 cut(s) | 509 |
| Eam1104I | CTCTTC | 1 cut(s) | 135 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 509 |
| EarI | CTCTTC | 1 cut(s) | 135 |
| Eco130I | CCWWGG | 2 cut(s) | 41, 204 |
| Eco47I | GGWCC | 5 cut(s) | 38, 271, 412, 463, 503 |
| EcoO109I | RGGNCCY | 2 cut(s) | 271, 412 |
| EcoRI | GAATTC | 1 cut(s) | 327 |
| EcoT14I | CCWWGG | 2 cut(s) | 41, 204 |
| ErhI | CCWWGG | 2 cut(s) | 41, 204 |
| FaeI | CATG | 6 cut(s) | 45, 208, 473, 533, 644, 749 |
| FaqI | GGGAC | 3 cut(s) | 51, 398, 754 |
| FatI | CATG | 6 cut(s) | 41, 204, 469, 529, 640, 745 |
| FauI | CCCGC | 2 cut(s) | 345, 535 |
| FblI | GTMKAC | 1 cut(s) | 551 |
| Fnu4HI | GCNGC | 3 cut(s) | 534, 632, 822 |
| FokI | GGATG | 2 cut(s) | 497, 602 |
| Fsp4HI | GCNGC | 3 cut(s) | 534, 632, 822 |
| FspBI | CTAG | 1 cut(s) | 834 |
| FspI | TGCGCA | 1 cut(s) | 282 |
| GlaI | GCGC | 1 cut(s) | 282 |
| GluI | GCNGC | 3 cut(s) | 534, 632, 822 |
| GsaI | CCCAGC | 2 cut(s) | 80, 667 |
| HaeIII | GGCC | 1 cut(s) | 356 |
| HapII | CCGG | 1 cut(s) | 776 |
| HgaI | GACGC | 1 cut(s) | 499 |
| HhaI | GCGC | 1 cut(s) | 283 |
| Hin1I | GRCGYC | 1 cut(s) | 566 |
| Hin1II | CATG | 6 cut(s) | 45, 208, 473, 533, 644, 749 |
| Hin6I | GCGC | 1 cut(s) | 281 |
| HinP1I | GCGC | 1 cut(s) | 281 |
| HincII | GTYRAC | 1 cut(s) | 552 |
| HindII | GTYRAC | 1 cut(s) | 552 |
| HpaII | CCGG | 1 cut(s) | 776 |
| HphI | GGTGA | 2 cut(s) | 221, 574 |
| Hpy166II | GTNNAC | 2 cut(s) | 466, 552 |
| Hpy188I | TCNGA | 3 cut(s) | 27, 515, 816 |
| Hpy188III | TCNNGA | 3 cut(s) | 332, 392, 776 |
| Hpy8I | GTNNAC | 2 cut(s) | 466, 552 |
| Hpy99I | CGWCG | 1 cut(s) | 515 |
| HpyAV | CCTTC | 2 cut(s) | 727, 731 |
| HpyCH4III | ACNGT | 1 cut(s) | 562 |
| HpyCH4IV | ACGT | 3 cut(s) | 388, 566, 801 |
| HpyCH4V | TGCA | 4 cut(s) | 91, 533, 709, 824 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 134, 254, 539, 830 |
| HpyF3I | CTNAG | 3 cut(s) | 13, 308, 693 |
| HpySE526I | ACGT | 3 cut(s) | 388, 566, 801 |
| Hsp92I | GRCGYC | 1 cut(s) | 566 |
| Hsp92II | CATG | 6 cut(s) | 45, 208, 473, 533, 644, 749 |
| HspAI | GCGC | 1 cut(s) | 281 |
| Kpn2I | TCCGGA | 1 cut(s) | 775 |
| KpnI | GGTACC | 1 cut(s) | 122 |
| Kzo9I | GATC | 1 cut(s) | 22 |
| LguI | GCTCTTC | 1 cut(s) | 135 |
| Lsp1109I | GCAGC | 3 cut(s) | 545, 643, 808 |
| LweI | GCATC | 2 cut(s) | 649, 696 |
| MaeI | CTAG | 1 cut(s) | 834 |
| MaeII | ACGT | 3 cut(s) | 388, 566, 801 |
| MaeIII | GTNAC | 1 cut(s) | 562 |
| MalI | GATC | 1 cut(s) | 24 |
| MboI | GATC | 1 cut(s) | 22 |
| MboII | GAAGA | 6 cut(s) | 77, 152, 662, 668, 778, 817 |
| MflI | RGATCY | 1 cut(s) | 22 |
| MluCI | AATT | 4 cut(s) | 54, 179, 327, 342 |
| MmeI | TCCRAC | 3 cut(s) | 318, 493, 697 |
| MroI | TCCGGA | 1 cut(s) | 775 |
| MslI | CAYNNNNRTG | 3 cut(s) | 471, 645, 750 |
| MspI | CCGG | 1 cut(s) | 776 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 134, 254, 539, 830 |
| NcoI | CCATGG | 2 cut(s) | 41, 204 |
| NdeII | GATC | 1 cut(s) | 22 |
| NlaIII | CATG | 6 cut(s) | 45, 208, 473, 533, 644, 749 |
| NlaIV | GGNNCC | 3 cut(s) | 39, 120, 414 |
| NmuCI | GTSAC | 1 cut(s) | 562 |
| NsbI | TGCGCA | 1 cut(s) | 282 |
| NspI | RCATGY | 1 cut(s) | 749 |
| PciSI | GCTCTTC | 1 cut(s) | 135 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 78 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 500 |
| PkrI | GCNGC | 3 cut(s) | 535, 633, 823 |
| PpuMI | RGGWCCY | 2 cut(s) | 271, 412 |
| PshAI | GACNNNNGTC | 1 cut(s) | 43 |
| PsiI | TTATAA | 1 cut(s) | 680 |
| Psp5II | RGGWCCY | 2 cut(s) | 271, 412 |
| PspFI | CCCAGC | 2 cut(s) | 76, 663 |
| PspN4I | GGNNCC | 3 cut(s) | 39, 120, 414 |
| PspPI | GGNCC | 6 cut(s) | 38, 271, 354, 412, 463, 503 |
| PspPPI | RGGWCCY | 2 cut(s) | 271, 412 |
| PsuI | RGATCY | 1 cut(s) | 22 |
| RsaI | GTAC | 3 cut(s) | 120, 383, 594 |
| RsaNI | GTAC | 3 cut(s) | 119, 382, 593 |
| RseI | CAYNNNNRTG | 3 cut(s) | 471, 645, 750 |
| SalI | GTCGAC | 1 cut(s) | 550 |
| SapI | GCTCTTC | 1 cut(s) | 135 |
| SatI | GCNGC | 3 cut(s) | 534, 632, 822 |
| Sau3AI | GATC | 1 cut(s) | 22 |
| Sau96I | GGNCC | 6 cut(s) | 38, 271, 354, 412, 463, 503 |
| SfaNI | GCATC | 2 cut(s) | 649, 696 |
| SinI | GGWCC | 5 cut(s) | 38, 271, 412, 463, 503 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 471, 645, 750 |
| SmlI | CTYRAG | 1 cut(s) | 434 |
| SmoI | CTYRAG | 1 cut(s) | 434 |
| Sse9I | AATT | 4 cut(s) | 54, 179, 327, 342 |
| SsiI | CCGC | 2 cut(s) | 352, 542 |
| SspMI | CTAG | 1 cut(s) | 834 |
| StyI | CCWWGG | 2 cut(s) | 41, 204 |
| TaaI | ACNGT | 1 cut(s) | 562 |
| TaiI | ACGT | 3 cut(s) | 391, 569, 804 |
| TaqI | TCGA | 3 cut(s) | 72, 551, 788 |
| TaqII | GACCGA | 2 cut(s) | 520, 569 |
| TasI | AATT | 4 cut(s) | 54, 179, 327, 342 |
| TatI | WGTACW | 1 cut(s) | 381 |
| TscAI | CASTG | 2 cut(s) | 129, 544 |
| TseFI | GTSAC | 1 cut(s) | 562 |
| TseI | GCWGC | 3 cut(s) | 533, 631, 821 |
| Tsp45I | GTSAC | 1 cut(s) | 562 |
| TspDTI | ATGAA | 6 cut(s) | 17, 168, 489, 501, 663, 669 |
| TspRI | CASTG | 2 cut(s) | 129, 544 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 500 |
| VpaK11BI | GGWCC | 5 cut(s) | 38, 271, 412, 463, 503 |
| XapI | RAATTY | 1 cut(s) | 327 |
| XceI | RCATGY | 1 cut(s) | 749 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 229 |
| XmiI | GTMKAC | 1 cut(s) | 551 |
| XspI | CTAG | 1 cut(s) | 834 |
| ZraI | GACGTC | 1 cut(s) | 567 |