Rmu_sc0006413.1_g000003

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006413.1
OG0000060
Physical Location & Seq
Reverse (-)
28164 .. 29303
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006413.1_g000003.1.cds

Sequence Viewer

Length: 1077 bp
atgttgttcgtagttcaaagagttccgatcaaggaactgaaaccacattcgaccagccgctgcaaaaaaaaattagacgaaatcagaaagaggaagcggcaacagggagatgagatttcatttgaagaatctacagaagaagacgtcaatgaagattcagaagaatcgattgaagaagattcagaagaatcgattgaagaagattcagaatcagaaggcgaacagacaacgaagagatttgtaatcaaaaccagacaacagccagaatggaaaacagttcaagaagaagaggattcaaaagaacaagaaactaaaaggaggagaaatgttaaactgaagatgagtaaagcaaagaagccaaggaaagggacaaataagaaggaagtgcagaagaaaggggtccaaaaagtgaagattgagtggaagcagcagaagtgcacactcaattcattctggagagtggtagatgcacacaaggatagaataccggaagaatcaaaggaaatattgaggatcacggattttggtgaaatgatcgaatcattctggcaagaaaagataaccgagatccaaatccacaagcatgaagtggacctggagataatcatgaggcactttgaccgcatagacaacaagtggaaatttggtgatgttgctatggaaataacggaggaggacatcaaggccttgtttcacttccagctgagagagagccctttgaagaagcaggctgtcctcagaacaaaggtgcaattgaagctggtaactgagttgacaaagccggcaaaacagaaagacgcccgaaagatagccgtgctgatgatcacgtatctattcagcacattcttcttcagcagaaccggaactcagattacatgggatatggtctccgtatgtgaacgcattgggaccataaacatgtacaactggccaaagctgattctggacttcttgatggcaaggctacaaaagtataggagaaacaatccatctacaatgaatggatgccttcttctcatctattactggttccttgagaagaccaaggcgaagacctggatacctggaaagcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

358

Amino Acids

42.81

Weight (kDa)

9.16

Isoelectric Point (pI)

62.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AciI CCGC 3 cut(s) 58, 97, 622
AclWI GGATC 2 cut(s) 521, 562
AcoI YGGCCR 1 cut(s) 929
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 2 cut(s) 356, 835
AcyI GRCGYC 2 cut(s) 144, 798
AfaI GTAC 1 cut(s) 923
AfiI CCNNNNNNNGG 1 cut(s) 365
AflIII ACRYGT 1 cut(s) 918
AgsI TTSAA 8 cut(s) 17, 125, 173, 197, 281, 297, 721, 757
AjnI CCWGG 3 cut(s) 594, 1055, 1063
AluBI AGCT 3 cut(s) 703, 760, 937
AluI AGCT 3 cut(s) 703, 760, 937
Alw21I GWGCWC 1 cut(s) 440
Alw26I GTCTC 1 cut(s) 892
Alw44I GTGCAC 1 cut(s) 436
AlwI GGATC 2 cut(s) 521, 562
AlwNI CAGNNNCTG 1 cut(s) 60
AoxI GGCC 2 cut(s) 684, 929
ApaLI GTGCAC 1 cut(s) 436
ApeKI GCWGC 2 cut(s) 60, 427
ApoI RAATTY 1 cut(s) 641
AspS9I GGNCC 3 cut(s) 400, 592, 909
AsuHPI GGTGA 2 cut(s) 539, 659
AvaII GGWCC 3 cut(s) 400, 592, 909
BaeGI GKGCMC 1 cut(s) 440
BalI TGGCCA 1 cut(s) 931
BanII GRGCYC 1 cut(s) 716
BbsI GAAGAC 3 cut(s) 147, 1046, 1058
Bbv12I GWGCWC 1 cut(s) 440
BbvI GCAGC 2 cut(s) 47, 439
BccI CCATC 2 cut(s) 949, 997
BceAI ACGGC 1 cut(s) 797
BciT130I CCWGG 3 cut(s) 596, 1057, 1065
BciVI GTATCC 1 cut(s) 1053
BclI TGATCA 1 cut(s) 822
BcoDI GTCTC 1 cut(s) 892
BfmI CTRYAG 1 cut(s) 132
BfuI GTATCC 1 cut(s) 1053
BisI GCNGC 4 cut(s) 58, 61, 98, 428
BlsI GCNGC 4 cut(s) 59, 62, 99, 429
Bme1390I CCNGG 3 cut(s) 596, 1057, 1065
Bme18I GGWCC 3 cut(s) 400, 592, 909
BmgT120I GGNCC 3 cut(s) 400, 592, 909
BmiI GGNNCC 3 cut(s) 401, 910, 1031
BmrFI CCNGG 3 cut(s) 596, 1057, 1065
BmsI GCATC 2 cut(s) 457, 995
BpiI GAAGAC 3 cut(s) 147, 1046, 1058
BpmI CTGGAG 2 cut(s) 475, 617
BpuEI CTTGAG 1 cut(s) 1055
Bsa29I ATCGAT 2 cut(s) 167, 191
BsaAI YACGTR 1 cut(s) 828
BsaBI GATNNNNATC 1 cut(s) 572
BsaHI GRCGYC 2 cut(s) 144, 798
BsaI GGTCTC 1 cut(s) 892
BsaJI CCNNGG 2 cut(s) 359, 1044
BsaWI WCCGGW 2 cut(s) 487, 860
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse118I RCCGGY 1 cut(s) 781
Bse1I ACTGG 2 cut(s) 932, 1031
Bse8I GATNNNNATC 1 cut(s) 572
BseBI CCWGG 3 cut(s) 596, 1057, 1065
BseCI ATCGAT 2 cut(s) 167, 191
BseDI CCNNGG 2 cut(s) 359, 1044
BseGI GGATG 1 cut(s) 1010
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMII CTCAG 4 cut(s) 695, 751, 759, 881
BseNI ACTGG 2 cut(s) 932, 1031
BseRI GAGGAG 2 cut(s) 334, 686
BseSI GKGCMC 1 cut(s) 440
BseXI GCAGC 2 cut(s) 47, 439
BsgI GTGCAG 1 cut(s) 407
BshFI GGCC 2 cut(s) 686, 931
BshVI ATCGAT 2 cut(s) 167, 191
BsiHKAI GWGCWC 1 cut(s) 440
BsiSI CCGG 3 cut(s) 488, 782, 861
BslFI GGGAC 2 cut(s) 382, 922
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 892
BsmFI GGGAC 2 cut(s) 382, 922
BsnI GGCC 2 cut(s) 686, 931
Bso31I GGTCTC 1 cut(s) 892
Bsp1286I GDGCHC 2 cut(s) 440, 716
Bsp1407I TGTACA 1 cut(s) 921
Bsp143I GATC 5 cut(s) 27, 513, 534, 567, 822
BspACI CCGC 3 cut(s) 58, 97, 622
BspANI GGCC 2 cut(s) 686, 931
BspCNI CTCAG 4 cut(s) 696, 750, 760, 880
BspDI ATCGAT 2 cut(s) 167, 191
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 3 cut(s) 401, 910, 1031
BspPI GGATC 2 cut(s) 521, 562
BspTNI GGTCTC 1 cut(s) 892
BsrFI RCCGGY 1 cut(s) 781
BsrGI TGTACA 1 cut(s) 921
BsrI ACTGG 2 cut(s) 932, 1031
BssAI RCCGGY 1 cut(s) 781
BssECI CCNNGG 2 cut(s) 359, 1044
BssMI GATC 5 cut(s) 27, 513, 534, 567, 822
BssNI GRCGYC 2 cut(s) 144, 798
BssT1I CCWWGG 2 cut(s) 359, 1044
Bst2UI CCWGG 3 cut(s) 596, 1057, 1065
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 2 cut(s) 227, 282
BstACI GRCGYC 2 cut(s) 144, 798
BstAUI TGTACA 1 cut(s) 921
BstBAI YACGTR 1 cut(s) 828
BstC8I GCNNGC 2 cut(s) 729, 783
BstDEI CTNAG 4 cut(s) 704, 737, 768, 867
BstF5I GGATG 1 cut(s) 1010
BstKTI GATC 5 cut(s) 30, 516, 537, 570, 825
BstMAI GTCTC 1 cut(s) 892
BstMBI GATC 5 cut(s) 27, 513, 534, 567, 822
BstMWI GCNNNNNNNGC 1 cut(s) 757
BstNI CCWGG 3 cut(s) 596, 1057, 1065
BstNSI RCATGY 1 cut(s) 922
BstSCI CCNGG 3 cut(s) 594, 1055, 1063
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 440
BstV1I GCAGC 2 cut(s) 47, 439
BstV2I GAAGAC 3 cut(s) 147, 1046, 1058
BstX2I RGATCY 1 cut(s) 567
BstYI RGATCY 1 cut(s) 567
Bsu15I ATCGAT 2 cut(s) 167, 191
BsuI GTATCC 1 cut(s) 1053
BsuRI GGCC 2 cut(s) 686, 931
BsuTUI ATCGAT 2 cut(s) 167, 191
BtsCI GGATG 1 cut(s) 1010
Cac8I GCNNGC 2 cut(s) 729, 783
CaiI CAGNNNCTG 1 cut(s) 60
CciI TCATGA 1 cut(s) 606
Cfr10I RCCGGY 1 cut(s) 781
Cfr13I GGNCC 3 cut(s) 400, 592, 909
ClaI ATCGAT 2 cut(s) 167, 191
CseI GACGC 1 cut(s) 806
Csp6I GTAC 1 cut(s) 922
CviAII CATG 4 cut(s) 584, 607, 876, 919
CviQI GTAC 1 cut(s) 922
DdeI CTNAG 4 cut(s) 704, 737, 768, 867
DpnI GATC 5 cut(s) 29, 515, 536, 569, 824
DpnII GATC 5 cut(s) 27, 513, 534, 567, 822
EaeI YGGCCR 1 cut(s) 929
Eam1104I CTCTTC 2 cut(s) 227, 282
EarI CTCTTC 2 cut(s) 227, 282
Eco130I CCWWGG 2 cut(s) 359, 1044
Eco147I AGGCCT 1 cut(s) 686
Eco24I GRGCYC 1 cut(s) 716
Eco31I GGTCTC 1 cut(s) 892
Eco47I GGWCC 3 cut(s) 400, 592, 909
Eco57I CTGAAG 2 cut(s) 356, 835
EcoRII CCWGG 3 cut(s) 594, 1055, 1063
EcoT14I CCWWGG 2 cut(s) 359, 1044
EcoT38I GRGCYC 1 cut(s) 716
ErhI CCWWGG 2 cut(s) 359, 1044
FaeI CATG 4 cut(s) 587, 610, 879, 922
FaqI GGGAC 2 cut(s) 382, 922
FatI CATG 4 cut(s) 583, 606, 875, 918
FbaI TGATCA 1 cut(s) 822
Fnu4HI GCNGC 4 cut(s) 58, 61, 98, 428
FokI GGATG 1 cut(s) 1017
FriOI GRGCYC 1 cut(s) 716
Fsp4HI GCNGC 4 cut(s) 58, 61, 98, 428
GluI GCNGC 4 cut(s) 58, 61, 98, 428
GsuI CTGGAG 2 cut(s) 475, 617
HaeIII GGCC 2 cut(s) 686, 931
HapII CCGG 3 cut(s) 488, 782, 861
HgaI GACGC 1 cut(s) 806
Hin1I GRCGYC 2 cut(s) 144, 798
Hin1II CATG 4 cut(s) 587, 610, 879, 922
HincII GTYRAC 1 cut(s) 774
HindII GTYRAC 1 cut(s) 774
HpaII CCGG 3 cut(s) 488, 782, 861
HphI GGTGA 2 cut(s) 539, 659
Hpy166II GTNNAC 4 cut(s) 438, 592, 774, 899
Hpy188I TCNGA 8 cut(s) 27, 86, 160, 184, 208, 214, 740, 870
Hpy188III TCNNGA 5 cut(s) 281, 454, 607, 944, 952
Hpy8I GTNNAC 4 cut(s) 438, 592, 774, 899
HpyAV CCTTC 3 cut(s) 209, 373, 1019
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 2 cut(s) 144, 827
HpyCH4V TGCA 5 cut(s) 63, 388, 438, 470, 751
HpyF10VI GCNNNNNNNGC 1 cut(s) 757
HpyF3I CTNAG 4 cut(s) 704, 737, 768, 867
HpySE526I ACGT 2 cut(s) 144, 827
Hsp92I GRCGYC 2 cut(s) 144, 798
Hsp92II CATG 4 cut(s) 587, 610, 879, 922
KroI GCCGGC 1 cut(s) 781
KroNI GCCGGC 1 cut(s) 783
Ksp22I TGATCA 1 cut(s) 822
Kzo9I GATC 5 cut(s) 27, 513, 534, 567, 822
Lsp1109I GCAGC 2 cut(s) 47, 439
LweI GCATC 2 cut(s) 457, 995
MaeII ACGT 2 cut(s) 144, 827
MaeIII GTNAC 1 cut(s) 763
MalI GATC 5 cut(s) 29, 515, 536, 569, 824
MboI GATC 5 cut(s) 27, 513, 534, 567, 822
MfeI CAATTG 1 cut(s) 752
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 2 cut(s) 440, 716
MlsI TGGCCA 1 cut(s) 931
MluCI AATT 4 cut(s) 71, 445, 641, 752
MluNI TGGCCA 1 cut(s) 931
MnlI CCTC 8 cut(s) 84, 283, 312, 504, 603, 664, 667, 746
Mox20I TGGCCA 1 cut(s) 931
MroNI GCCGGC 1 cut(s) 781
MscI TGGCCA 1 cut(s) 931
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 2 cut(s) 582, 917
Msp20I TGGCCA 1 cut(s) 931
MspA1I CMGCKG 2 cut(s) 60, 703
MspI CCGG 3 cut(s) 488, 782, 861
MspR9I CCNGG 3 cut(s) 596, 1057, 1065
MunI CAATTG 1 cut(s) 752
MvaI CCWGG 3 cut(s) 596, 1057, 1065
MwoI GCNNNNNNNGC 1 cut(s) 757
NaeI GCCGGC 1 cut(s) 783
NdeII GATC 5 cut(s) 27, 513, 534, 567, 822
NgoMIV GCCGGC 1 cut(s) 781
NlaIII CATG 4 cut(s) 587, 610, 879, 922
NlaIV GGNNCC 3 cut(s) 401, 910, 1031
NspI RCATGY 1 cut(s) 922
PagI TCATGA 1 cut(s) 606
PceI AGGCCT 1 cut(s) 686
PciI ACATGT 1 cut(s) 918
PdiI GCCGGC 1 cut(s) 783
PkrI GCNGC 4 cut(s) 59, 62, 99, 429
Ppu21I YACGTR 1 cut(s) 828
PscI ACATGT 1 cut(s) 918
Psp6I CCWGG 3 cut(s) 594, 1055, 1063
PspGI CCWGG 3 cut(s) 594, 1055, 1063
PspN4I GGNNCC 3 cut(s) 401, 910, 1031
PspPI GGNCC 3 cut(s) 400, 592, 909
PsrI GAACNNNNNNTAC 2 cut(s) 856, 888
PstNI CAGNNNCTG 1 cut(s) 60
PsuI RGATCY 1 cut(s) 567
PvuII CAGCTG 1 cut(s) 703
RsaI GTAC 1 cut(s) 923
RsaNI GTAC 1 cut(s) 922
RseI CAYNNNNRTG 2 cut(s) 582, 917
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 4 cut(s) 58, 61, 98, 428
Sau3AI GATC 5 cut(s) 27, 513, 534, 567, 822
Sau96I GGNCC 3 cut(s) 400, 592, 909
ScrFI CCNGG 3 cut(s) 596, 1057, 1065
SduI GDGCHC 2 cut(s) 440, 716
SetI ASST 9 cut(s) 147, 597, 705, 750, 762, 830, 939, 1058, 1066
SfaNI GCATC 2 cut(s) 457, 995
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 3 cut(s) 400, 592, 909
SmiMI CAYNNNNRTG 2 cut(s) 582, 917
SmlI CTYRAG 1 cut(s) 1034
SmoI CTYRAG 1 cut(s) 1034
Sse9I AATT 4 cut(s) 71, 445, 641, 752
SseBI AGGCCT 1 cut(s) 686
SsiI CCGC 3 cut(s) 58, 97, 622
SspI AATATT 1 cut(s) 507
StuI AGGCCT 1 cut(s) 686
StyD4I CCNGG 3 cut(s) 594, 1055, 1063
StyI CCWWGG 2 cut(s) 359, 1044
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 2 cut(s) 147, 830
TaqI TCGA 4 cut(s) 50, 167, 191, 537
TasI AATT 4 cut(s) 71, 445, 641, 752
TatI WGTACW 1 cut(s) 921
TauI GCSGC 2 cut(s) 60, 100
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseI GCWGC 2 cut(s) 60, 427
TspDTI ATGAA 5 cut(s) 108, 165, 438, 600, 1013
TspGWI ACGGA 3 cut(s) 533, 683, 880
VneI GTGCAC 1 cut(s) 436
VpaK11BI GGWCC 3 cut(s) 400, 592, 909
XapI RAATTY 1 cut(s) 641
XceI RCATGY 1 cut(s) 922
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.