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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2112 |
| AatII | GACGTC | 1 cut(s) | 855 |
| Acc36I | ACCTGC | 2 cut(s) | 783, 2112 |
| Acc65I | GGTACC | 1 cut(s) | 1110 |
| AccB1I | GGYRCC | 1 cut(s) | 1110 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 785 |
| AciI | CCGC | 2 cut(s) | 1805, 1978 |
| AclI | AACGTT | 1 cut(s) | 1296 |
| AclWI | GGATC | 4 cut(s) | 607, 807, 2031, 2135 |
| AcoI | YGGCCR | 1 cut(s) | 1184 |
| AcsI | RAATTY | 4 cut(s) | 561, 645, 2003, 2072 |
| AcuI | CTGAAG | 7 cut(s) | 60, 707, 973, 1088, 1518, 1600, 1924 |
| AcyI | GRCGYC | 2 cut(s) | 852, 1630 |
| AfaI | GTAC | 8 cut(s) | 237, 258, 592, 692, 968, 1080, 1112, 1811 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 449, 785, 895, 1014, 1432, 1723 |
| AgsI | TTSAA | 9 cut(s) | 976, 1063, 1352, 1823, 1849, 1901, 1922, 2090, 2179 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AjnI | CCWGG | 3 cut(s) | 888, 1890, 2019 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1538, 1570 |
| Alw21I | GWGCWC | 3 cut(s) | 819, 915, 1543 |
| Alw26I | GTCTC | 3 cut(s) | 549, 722, 1151 |
| AlwI | GGATC | 4 cut(s) | 607, 807, 2031, 2135 |
| AoxI | GGCC | 2 cut(s) | 381, 1184 |
| ApeKI | GCWGC | 2 cut(s) | 30, 950 |
| ApoI | RAATTY | 4 cut(s) | 561, 645, 2003, 2072 |
| Asp718I | GGTACC | 1 cut(s) | 1110 |
| AspLEI | GCGC | 1 cut(s) | 1522 |
| AspS9I | GGNCC | 2 cut(s) | 1018, 2059 |
| AsuHPI | GGTGA | 4 cut(s) | 631, 895, 1373, 1738 |
| AvaII | GGWCC | 2 cut(s) | 1018, 2059 |
| BanI | GGYRCC | 1 cut(s) | 1110 |
| BanII | GRGCYC | 2 cut(s) | 915, 1543 |
| BbsI | GAAGAC | 7 cut(s) | 759, 1044, 1359, 1397, 1781, 1881, 2178 |
| Bbv12I | GWGCWC | 3 cut(s) | 819, 915, 1543 |
| BbvCI | CCTCAGC | 1 cut(s) | 2187 |
| BbvI | GCAGC | 2 cut(s) | 17, 962 |
| BccI | CCATC | 4 cut(s) | 1087, 1091, 1614, 1642 |
| BciT130I | CCWGG | 3 cut(s) | 890, 1892, 2021 |
| BclI | TGATCA | 4 cut(s) | 1582, 1597, 1668, 1728 |
| BcoDI | GTCTC | 3 cut(s) | 549, 722, 1151 |
| BfaI | CTAG | 4 cut(s) | 111, 144, 1043, 1082 |
| BfuAI | ACCTGC | 2 cut(s) | 783, 2112 |
| BisI | GCNGC | 3 cut(s) | 31, 951, 1806 |
| BlsI | GCNGC | 3 cut(s) | 32, 952, 1807 |
| BmcAI | AGTACT | 3 cut(s) | 592, 692, 1080 |
| Bme1390I | CCNGG | 3 cut(s) | 890, 1892, 2021 |
| Bme18I | GGWCC | 2 cut(s) | 1018, 2059 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 2 cut(s) | 1018, 2059 |
| BmiI | GGNNCC | 3 cut(s) | 1019, 1112, 2061 |
| BmrFI | CCNGG | 3 cut(s) | 890, 1892, 2021 |
| BmrI | ACTGGG | 2 cut(s) | 1285, 1317 |
| BmsI | GCATC | 3 cut(s) | 42, 845, 1494 |
| BmuI | ACTGGG | 2 cut(s) | 1285, 1317 |
| BoxI | GACNNNNGTC | 1 cut(s) | 364 |
| BpiI | GAAGAC | 7 cut(s) | 759, 1044, 1359, 1397, 1781, 1881, 2178 |
| BpmI | CTGGAG | 1 cut(s) | 553 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2187 |
| BpuEI | CTTGAG | 3 cut(s) | 803, 899, 2049 |
| BsaHI | GRCGYC | 2 cut(s) | 852, 1630 |
| BsaJI | CCNNGG | 2 cut(s) | 906, 1950 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 219, 240, 249, 270 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 449, 785, 895, 1014, 1432, 1723 |
| Bse1I | ACTGG | 6 cut(s) | 790, 1187, 1280, 1312, 1702, 1842 |
| Bse3DI | GCAATG | 1 cut(s) | 1987 |
| BseBI | CCWGG | 3 cut(s) | 890, 1892, 2021 |
| BseDI | CCNNGG | 2 cut(s) | 906, 1950 |
| BseGI | GGATG | 5 cut(s) | 615, 1102, 1123, 1974, 2016 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 449, 785, 895, 1014, 1432, 1723 |
| BseMI | GCAATG | 1 cut(s) | 1987 |
| BseMII | CTCAG | 4 cut(s) | 794, 1793, 2073, 2201 |
| BseNI | ACTGG | 6 cut(s) | 790, 1187, 1280, 1312, 1702, 1842 |
| BseRI | GAGGAG | 2 cut(s) | 1262, 1394 |
| BseXI | GCAGC | 2 cut(s) | 17, 962 |
| BsgI | GTGCAG | 2 cut(s) | 350, 520 |
| BshFI | GGCC | 2 cut(s) | 383, 1186 |
| BshNI | GGYRCC | 1 cut(s) | 1110 |
| BsiHKAI | GWGCWC | 3 cut(s) | 819, 915, 1543 |
| BsiSI | CCGG | 1 cut(s) | 1187 |
| BslFI | GGGAC | 1 cut(s) | 1031 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 449, 785, 895, 1014, 1432, 1723 |
| BsmAI | GTCTC | 3 cut(s) | 549, 722, 1151 |
| BsmFI | GGGAC | 1 cut(s) | 1031 |
| BsmI | GAATGC | 1 cut(s) | 980 |
| BsnI | GGCC | 2 cut(s) | 383, 1186 |
| Bsp1286I | GDGCHC | 3 cut(s) | 819, 915, 1543 |
| BspACI | CCGC | 2 cut(s) | 1805, 1978 |
| BspANI | GGCC | 2 cut(s) | 383, 1186 |
| BspCNI | CTCAG | 4 cut(s) | 795, 1792, 2074, 2200 |
| BspLI | GGNNCC | 3 cut(s) | 1019, 1112, 2061 |
| BspMI | ACCTGC | 2 cut(s) | 783, 2112 |
| BspPI | GGATC | 4 cut(s) | 607, 807, 2031, 2135 |
| BspT107I | GGYRCC | 1 cut(s) | 1110 |
| BsrDI | GCAATG | 1 cut(s) | 1987 |
| BsrI | ACTGG | 6 cut(s) | 790, 1187, 1280, 1312, 1702, 1842 |
| BssECI | CCNNGG | 2 cut(s) | 906, 1950 |
| BssNI | GRCGYC | 2 cut(s) | 852, 1630 |
| BssT1I | CCWWGG | 2 cut(s) | 906, 1950 |
| Bst2UI | CCWGG | 3 cut(s) | 890, 1892, 2021 |
| Bst4CI | ACNGT | 3 cut(s) | 598, 1345, 1929 |
| Bst6I | CTCTTC | 6 cut(s) | 93, 888, 977, 992, 1275, 1284 |
| BstACI | GRCGYC | 2 cut(s) | 852, 1630 |
| BstC8I | GCNNGC | 2 cut(s) | 518, 1628 |
| BstDEI | CTNAG | 5 cut(s) | 521, 803, 1779, 2082, 2187 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 893 |
| BstF5I | GGATG | 5 cut(s) | 615, 1102, 1123, 1974, 2016 |
| BstHHI | GCGC | 1 cut(s) | 1522 |
| BstMAI | GTCTC | 3 cut(s) | 549, 722, 1151 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1249 |
| BstNI | CCWGG | 3 cut(s) | 890, 1892, 2021 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 364 |
| BstSCI | CCNGG | 3 cut(s) | 888, 1890, 2019 |
| BstV1I | GCAGC | 2 cut(s) | 17, 962 |
| BstV2I | GAAGAC | 7 cut(s) | 759, 1044, 1359, 1397, 1781, 1881, 2178 |
| BstX2I | RGATCY | 2 cut(s) | 799, 2127 |
| BstYI | RGATCY | 2 cut(s) | 799, 2127 |
| BsuRI | GGCC | 2 cut(s) | 383, 1186 |
| BtsCI | GGATG | 5 cut(s) | 615, 1102, 1123, 1974, 2016 |
| BtsI | GCAGTG | 1 cut(s) | 953 |
| BtsIMutI | CAGTG | 5 cut(s) | 953, 1305, 1350, 1740, 2079 |
| BveI | ACCTGC | 2 cut(s) | 783, 2112 |
| Cac8I | GCNNGC | 2 cut(s) | 518, 1628 |
| CfoI | GCGC | 1 cut(s) | 1522 |
| Cfr13I | GGNCC | 2 cut(s) | 1018, 2059 |
| CseI | GACGC | 2 cut(s) | 1619, 2018 |
| Csp6I | GTAC | 8 cut(s) | 236, 257, 591, 691, 967, 1079, 1111, 1810 |
| CviAII | CATG | 7 cut(s) | 662, 964, 1014, 1315, 1580, 1826, 1990 |
| CviQI | GTAC | 8 cut(s) | 236, 257, 591, 691, 967, 1079, 1111, 1810 |
| DdeI | CTNAG | 5 cut(s) | 521, 803, 1779, 2082, 2187 |
| DraI | TTTAAA | 1 cut(s) | 1885 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| EaeI | YGGCCR | 1 cut(s) | 1184 |
| Eam1104I | CTCTTC | 6 cut(s) | 93, 888, 977, 992, 1275, 1284 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| EarI | CTCTTC | 6 cut(s) | 93, 888, 977, 992, 1275, 1284 |
| Ecl136II | GAGCTC | 2 cut(s) | 913, 1541 |
| Eco130I | CCWWGG | 2 cut(s) | 906, 1950 |
| Eco24I | GRGCYC | 2 cut(s) | 915, 1543 |
| Eco47I | GGWCC | 2 cut(s) | 1018, 2059 |
| Eco53kI | GAGCTC | 2 cut(s) | 913, 1541 |
| Eco57I | CTGAAG | 7 cut(s) | 60, 707, 973, 1088, 1518, 1600, 1924 |
| EcoICRI | GAGCTC | 2 cut(s) | 913, 1541 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 893 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1018, 2059 |
| EcoRII | CCWGG | 3 cut(s) | 888, 1890, 2019 |
| EcoT14I | CCWWGG | 2 cut(s) | 906, 1950 |
| EcoT22I | ATGCAT | 1 cut(s) | 982 |
| EcoT38I | GRGCYC | 2 cut(s) | 915, 1543 |
| ErhI | CCWWGG | 2 cut(s) | 906, 1950 |
| FaeI | CATG | 7 cut(s) | 665, 967, 1017, 1318, 1583, 1829, 1993 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1382, 1414 |
| FaqI | GGGAC | 1 cut(s) | 1031 |
| FatI | CATG | 7 cut(s) | 661, 963, 1013, 1314, 1579, 1825, 1989 |
| FbaI | TGATCA | 4 cut(s) | 1582, 1597, 1668, 1728 |
| Fnu4HI | GCNGC | 3 cut(s) | 31, 951, 1806 |
| FokI | GGATG | 5 cut(s) | 622, 1109, 1110, 1961, 2003 |
| FriOI | GRGCYC | 2 cut(s) | 915, 1543 |
| Fsp4HI | GCNGC | 3 cut(s) | 31, 951, 1806 |
| FspBI | CTAG | 4 cut(s) | 111, 144, 1043, 1082 |
| GlaI | GCGC | 1 cut(s) | 1521 |
| GluI | GCNGC | 3 cut(s) | 31, 951, 1806 |
| GsuI | CTGGAG | 1 cut(s) | 553 |
| HaeIII | GGCC | 2 cut(s) | 383, 1186 |
| HapII | CCGG | 1 cut(s) | 1187 |
| HgaI | GACGC | 2 cut(s) | 1619, 2018 |
| HhaI | GCGC | 1 cut(s) | 1522 |
| Hin1I | GRCGYC | 2 cut(s) | 852, 1630 |
| Hin1II | CATG | 7 cut(s) | 665, 967, 1017, 1318, 1583, 1829, 1993 |
| Hin6I | GCGC | 1 cut(s) | 1520 |
| HinP1I | GCGC | 1 cut(s) | 1520 |
| HincII | GTYRAC | 1 cut(s) | 1634 |
| HindII | GTYRAC | 1 cut(s) | 1634 |
| HindIII | AAGCTT | 1 cut(s) | 573 |
| HinfI | GANTC | 4 cut(s) | 365, 1059, 1174, 1777 |
| HpaII | CCGG | 1 cut(s) | 1187 |
| HphI | GGTGA | 4 cut(s) | 631, 895, 1373, 1738 |
| Hpy166II | GTNNAC | 2 cut(s) | 1634, 1987 |
| Hpy188III | TCNNGA | 8 cut(s) | 123, 532, 916, 1178, 1586, 1601, 1849, 2027 |
| Hpy8I | GTNNAC | 2 cut(s) | 1634, 1987 |
| HpyCH4III | ACNGT | 3 cut(s) | 598, 1345, 1929 |
| HpyCH4IV | ACGT | 2 cut(s) | 852, 1296 |
| HpyCH4V | TGCA | 9 cut(s) | 33, 331, 501, 516, 950, 980, 1243, 1507, 1753 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1249 |
| HpyF3I | CTNAG | 5 cut(s) | 521, 803, 1779, 2082, 2187 |
| HpySE526I | ACGT | 2 cut(s) | 852, 1296 |
| Hsp92I | GRCGYC | 2 cut(s) | 852, 1630 |
| Hsp92II | CATG | 7 cut(s) | 665, 967, 1017, 1318, 1583, 1829, 1993 |
| HspAI | GCGC | 1 cut(s) | 1520 |
| KpnI | GGTACC | 1 cut(s) | 1114 |
| Ksp22I | TGATCA | 4 cut(s) | 1582, 1597, 1668, 1728 |
| LmnI | GCTCC | 4 cut(s) | 910, 1170, 1249, 1638 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 962 |
| LweI | GCATC | 3 cut(s) | 42, 845, 1494 |
| MaeI | CTAG | 4 cut(s) | 111, 144, 1043, 1082 |
| MaeII | ACGT | 2 cut(s) | 852, 1296 |
| MaeIII | GTNAC | 6 cut(s) | 120, 149, 1303, 1492, 1704, 1934 |
| MfeI | CAATTG | 1 cut(s) | 1063 |
| MflI | RGATCY | 2 cut(s) | 799, 2127 |
| MhlI | GDGCHC | 3 cut(s) | 819, 915, 1543 |
| MlyI | GAGTC | 2 cut(s) | 374, 1771 |
| MmeI | TCCRAC | 4 cut(s) | 75, 640, 1151, 1215 |
| Mph1103I | ATGCAT | 1 cut(s) | 982 |
| MseI | TTAA | 8 cut(s) | 408, 702, 792, 1010, 1211, 1431, 1800, 1884 |
| MslI | CAYNNNNRTG | 1 cut(s) | 660 |
| MspA1I | CMGCKG | 1 cut(s) | 30 |
| MspI | CCGG | 1 cut(s) | 1187 |
| MspR9I | CCNGG | 3 cut(s) | 890, 1892, 2021 |
| MunI | CAATTG | 1 cut(s) | 1063 |
| Mva1269I | GAATGC | 1 cut(s) | 980 |
| MvaI | CCWGG | 3 cut(s) | 890, 1892, 2021 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1249 |
| NlaIII | CATG | 7 cut(s) | 665, 967, 1017, 1318, 1583, 1829, 1993 |
| NlaIV | GGNNCC | 3 cut(s) | 1019, 1112, 2061 |
| NmuCI | GTSAC | 5 cut(s) | 120, 149, 1303, 1492, 1704 |
| NsiI | ATGCAT | 1 cut(s) | 982 |
| PaqCI | CACCTGC | 1 cut(s) | 2112 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 381 |
| PctI | GAATGC | 1 cut(s) | 980 |
| PfeI | GAWTC | 2 cut(s) | 1059, 1174 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 785 |
| PfoI | TCCNGGA | 1 cut(s) | 2019 |
| PkrI | GCNGC | 3 cut(s) | 32, 952, 1807 |
| PleI | GAGTC | 2 cut(s) | 373, 1771 |
| PpsI | GAGTC | 2 cut(s) | 373, 1771 |
| PpuMI | RGGWCCY | 2 cut(s) | 1018, 2059 |
| PshAI | GACNNNNGTC | 1 cut(s) | 364 |
| Psp124BI | GAGCTC | 2 cut(s) | 915, 1543 |
| Psp1406I | AACGTT | 1 cut(s) | 1296 |
| Psp5II | RGGWCCY | 2 cut(s) | 1018, 2059 |
| Psp6I | CCWGG | 3 cut(s) | 888, 1890, 2019 |
| PspGI | CCWGG | 3 cut(s) | 888, 1890, 2019 |
| PspN4I | GGNNCC | 3 cut(s) | 1019, 1112, 2061 |
| PspPI | GGNCC | 2 cut(s) | 1018, 2059 |
| PspPPI | RGGWCCY | 2 cut(s) | 1018, 2059 |
| PsuI | RGATCY | 2 cut(s) | 799, 2127 |
| PvuII | CAGCTG | 1 cut(s) | 30 |
| RsaI | GTAC | 8 cut(s) | 237, 258, 592, 692, 968, 1080, 1112, 1811 |
| RsaNI | GTAC | 8 cut(s) | 236, 257, 591, 691, 967, 1079, 1111, 1810 |
| RseI | CAYNNNNRTG | 1 cut(s) | 660 |
| SacI | GAGCTC | 2 cut(s) | 915, 1543 |
| SaqAI | TTAA | 8 cut(s) | 408, 702, 792, 1010, 1211, 1431, 1800, 1884 |
| SatI | GCNGC | 3 cut(s) | 31, 951, 1806 |
| Sau96I | GGNCC | 2 cut(s) | 1018, 2059 |
| ScaI | AGTACT | 3 cut(s) | 592, 692, 1080 |
| SchI | GAGTC | 2 cut(s) | 374, 1771 |
| ScrFI | CCNGG | 3 cut(s) | 890, 1892, 2021 |
| SduI | GDGCHC | 3 cut(s) | 819, 915, 1543 |
| SfaNI | GCATC | 3 cut(s) | 42, 845, 1494 |
| SinI | GGWCC | 2 cut(s) | 1018, 2059 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 660 |
| SmlI | CTYRAG | 3 cut(s) | 818, 914, 2064 |
| SmoI | CTYRAG | 3 cut(s) | 818, 914, 2064 |
| SsiI | CCGC | 2 cut(s) | 1805, 1978 |
| SspI | AATATT | 1 cut(s) | 1749 |
| SspMI | CTAG | 4 cut(s) | 111, 144, 1043, 1082 |
| SstI | GAGCTC | 2 cut(s) | 915, 1543 |
| StyD4I | CCNGG | 3 cut(s) | 888, 1890, 2019 |
| StyI | CCWWGG | 2 cut(s) | 906, 1950 |
| TaaI | ACNGT | 3 cut(s) | 598, 1345, 1929 |
| TaiI | ACGT | 2 cut(s) | 855, 1299 |
| TaqI | TCGA | 2 cut(s) | 495, 842 |
| TatI | WGTACW | 5 cut(s) | 235, 256, 590, 690, 1078 |
| TauI | GCSGC | 1 cut(s) | 1808 |
| TfiI | GAWTC | 2 cut(s) | 1059, 1174 |
| Tru1I | TTAA | 8 cut(s) | 408, 702, 792, 1010, 1211, 1431, 1800, 1884 |
| Tru9I | TTAA | 8 cut(s) | 408, 702, 792, 1010, 1211, 1431, 1800, 1884 |
| TscAI | CASTG | 5 cut(s) | 960, 1312, 1350, 1747, 2086 |
| TseFI | GTSAC | 5 cut(s) | 120, 149, 1303, 1492, 1704 |
| TseI | GCWGC | 2 cut(s) | 30, 950 |
| Tsp45I | GTSAC | 5 cut(s) | 120, 149, 1303, 1492, 1704 |
| TspGWI | ACGGA | 3 cut(s) | 410, 844, 1651 |
| TspRI | CASTG | 5 cut(s) | 960, 1312, 1350, 1747, 2086 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 785 |
| VpaK11BI | GGWCC | 2 cut(s) | 1018, 2059 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 893 |
| XapI | RAATTY | 4 cut(s) | 561, 645, 2003, 2072 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 573 |
| XspI | CTAG | 4 cut(s) | 111, 144, 1043, 1082 |
| ZraI | GACGTC | 1 cut(s) | 853 |
| ZrmI | AGTACT | 3 cut(s) | 592, 692, 1080 |
| Zsp2I | ATGCAT | 1 cut(s) | 982 |