FvH4_2g08811

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000520
Physical Location & Seq
Reverse (-)
7697803 .. 7701001
3199 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08811.t1

Sequence Viewer

Length: 738 bp
ATGGACAGAGGGGCGATTTCTAGGTTATCCGAAGATGAAAGCTCAATTGGAAAGCCCGGGGATTTGGTGAAACCCAGTAGCTCCGAGGGTTTGAAAACTCCGATGGATAGCGGCTACGAATGGATCTCGATTGGAAAGAAAATTCGATCGGGGGATTCGAAAAAGGAGCCACATCATCTCGGCGCAAATCCAGACGACTGTGCTGCTGCGCCCAGTCTGATCAACAAAGCAAGCTTCAAGTCCAAAGAACCGAAGGCTGCTGGAGTTGCTTCTTCTACACCTGTGGTCATTGGAGGAGAAAAATGTCAGGTATGTGATGATGACGACCACCACGCCGTTGATTGCCTGTTCCTTGTGGTCATCGGAGTAGAACGATGTCGGATCTGTGGTAATGACCACCACCGCACCGCTGATTGCCTGTTCTTGAAGTATGTTCCACCTGGTTCAACTGTTGGCGCTGACTATTTGGTAATATGTGGCGAATGTGGTTATGAGCTTCTCCAGCCTACTGCAAAATGGTGTTCGATGTGCGGTGAATGGGGAGGACGAGCGGTGGAGGCATCTACTGTTGATAAGTTCTGTCGCAACCGTGACAAAGAATTTTACAAACTAGTTGAATCTGAATCTGAGAATGAGGATGAGGACATGGACCTGGACACAAAGGATTGTTCATGGAACTACTACCAAGATTCTTCGGACCTAGAAGACGACACAGCAGAACAAGCTGAAAGGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

26.82

Weight (kDa)

4.66

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 551
AciI CCGC 5 cut(s) 111, 403, 408, 531, 551
AclWI GGATC 2 cut(s) 131, 389
AcsI RAATTY 2 cut(s) 141, 599
AgsI TTSAA 5 cut(s) 94, 238, 427, 447, 617
AhlI ACTAGT 1 cut(s) 610
AjnI CCWGG 2 cut(s) 439, 651
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 5 cut(s) 42, 81, 234, 496, 725
AluI AGCT 5 cut(s) 42, 81, 234, 496, 725
AlwI GGATC 2 cut(s) 131, 389
Ama87I CYCGRG 1 cut(s) 56
ApeKI GCWGC 3 cut(s) 203, 206, 257
ApoI RAATTY 2 cut(s) 141, 599
AspLEI GCGC 3 cut(s) 185, 211, 458
AspS9I GGNCC 2 cut(s) 649, 697
AsuC2I CCSGG 2 cut(s) 57, 58
AsuHPI GGTGA 2 cut(s) 79, 545
AsuII TTCGAA 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 2 cut(s) 649, 697
BbsI GAAGAC 1 cut(s) 711
BbvI GCAGC 3 cut(s) 190, 193, 244
BccI CCATC 1 cut(s) 97
BceAI ACGGC 1 cut(s) 320
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 2 cut(s) 441, 653
BclI TGATCA 1 cut(s) 219
BcnI CCSGG 2 cut(s) 57, 58
BcuI ACTAGT 1 cut(s) 610
BfaI CTAG 3 cut(s) 21, 611, 701
BfoI RGCGCY 1 cut(s) 459
BisI GCNGC 4 cut(s) 112, 204, 207, 258
BlsI GCNGC 4 cut(s) 113, 205, 208, 259
Bme1390I CCNGG 4 cut(s) 57, 58, 441, 653
Bme18I GGWCC 2 cut(s) 649, 697
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 649, 697
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 4 cut(s) 57, 58, 441, 653
BmrI ACTGGG 2 cut(s) 69, 207
BmsI GCATC 1 cut(s) 569
BmuI ACTGGG 2 cut(s) 69, 207
BpiI GAAGAC 1 cut(s) 711
BpmI CTGGAG 2 cut(s) 282, 485
Bpu14I TTCGAA 1 cut(s) 158
BpuMI CCSGG 2 cut(s) 57, 58
BsaJI CCNNGG 3 cut(s) 56, 57, 84
Bse1I ACTGG 2 cut(s) 75, 213
BseBI CCWGG 2 cut(s) 441, 653
BseDI CCNNGG 3 cut(s) 56, 57, 84
BseGI GGATG 1 cut(s) 643
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 2 cut(s) 75, 213
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 3 cut(s) 190, 193, 244
Bsh1285I CGRYCG 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 158
Bsp143I GATC 4 cut(s) 123, 146, 219, 381
BspACI CCGC 5 cut(s) 111, 403, 408, 531, 551
BspCNI CTCAG 1 cut(s) 619
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 2 cut(s) 131, 389
BspT104I TTCGAA 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 551
BsrI ACTGG 2 cut(s) 75, 213
BssECI CCNNGG 3 cut(s) 56, 57, 84
BssMI GATC 4 cut(s) 123, 146, 219, 381
Bst2UI CCWGG 2 cut(s) 441, 653
Bst4CI ACNGT 4 cut(s) 200, 451, 568, 590
BstBI TTCGAA 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 627
BstF5I GGATG 1 cut(s) 643
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 3 cut(s) 185, 211, 458
BstKTI GATC 4 cut(s) 126, 149, 222, 384
BstMBI GATC 4 cut(s) 123, 146, 219, 381
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 4 cut(s) 266, 502, 557, 722
BstNI CCWGG 2 cut(s) 441, 653
BstSCI CCNGG 4 cut(s) 55, 56, 439, 651
BstV1I GCAGC 3 cut(s) 190, 193, 244
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 2 cut(s) 123, 381
BstYI RGATCY 2 cut(s) 123, 381
BtsCI GGATG 1 cut(s) 643
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 3 cut(s) 185, 211, 458
Cfr13I GGNCC 2 cut(s) 649, 697
Cfr9I CCCGGG 1 cut(s) 56
CsiI ACCWGGT 1 cut(s) 439
CviAII CATG 2 cut(s) 646, 672
DdeI CTNAG 1 cut(s) 627
DpnI GATC 4 cut(s) 125, 148, 221, 383
DpnII GATC 4 cut(s) 123, 146, 219, 381
Eco47I GGWCC 2 cut(s) 649, 697
Eco88I CYCGRG 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 439, 651
FaeI CATG 2 cut(s) 649, 675
FaiI YATR 6 cut(s) 313, 432, 475, 492, 647, 673
FatI CATG 2 cut(s) 645, 671
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 4 cut(s) 112, 204, 207, 258
FokI GGATG 1 cut(s) 650
Fsp4HI GCNGC 4 cut(s) 112, 204, 207, 258
FspBI CTAG 3 cut(s) 21, 611, 701
GlaI GCGC 3 cut(s) 184, 210, 457
GluI GCNGC 4 cut(s) 112, 204, 207, 258
GsuI CTGGAG 2 cut(s) 282, 485
HaeII RGCGCY 1 cut(s) 459
HapII CCGG 1 cut(s) 57
HhaI GCGC 3 cut(s) 185, 211, 458
Hin1II CATG 2 cut(s) 649, 675
Hin6I GCGC 3 cut(s) 183, 209, 456
HinP1I GCGC 3 cut(s) 183, 209, 456
HindIII AAGCTT 1 cut(s) 232
HinfI GANTC 4 cut(s) 155, 617, 623, 689
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 79, 545
Hpy188I TCNGA 9 cut(s) 31, 85, 102, 219, 365, 381, 622, 628, 697
Hpy188III TCNNGA 3 cut(s) 127, 191, 424
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 4 cut(s) 200, 451, 568, 590
HpyCH4V TGCA 1 cut(s) 512
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 502, 557, 722
HpyF3I CTNAG 1 cut(s) 627
Hsp92II CATG 2 cut(s) 649, 675
HspAI GCGC 3 cut(s) 183, 209, 456
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 4 cut(s) 123, 146, 219, 381
LmnI GCTCC 2 cut(s) 86, 166
Lsp1109I GCAGC 3 cut(s) 190, 193, 244
LweI GCATC 1 cut(s) 569
MabI ACCWGGT 1 cut(s) 439
MaeI CTAG 3 cut(s) 21, 611, 701
MaeIII GTNAC 1 cut(s) 590
MalI GATC 4 cut(s) 125, 148, 221, 383
MbiI CCGCTC 1 cut(s) 551
MboI GATC 4 cut(s) 123, 146, 219, 381
MboII GAAGA 4 cut(s) 44, 264, 684, 716
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 2 cut(s) 123, 381
MluCI AATT 3 cut(s) 45, 141, 599
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 6 cut(s) 79, 287, 536, 550, 628, 634
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 4 cut(s) 57, 58, 441, 653
MunI CAATTG 1 cut(s) 45
MvaI CCWGG 2 cut(s) 441, 653
MwoI GCNNNNNNNGC 4 cut(s) 266, 502, 557, 722
NciI CCSGG 2 cut(s) 57, 58
NdeII GATC 4 cut(s) 123, 146, 219, 381
NlaIII CATG 2 cut(s) 649, 675
NlaIV GGNNCC 1 cut(s) 168
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 590
NspV TTCGAA 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PfeI GAWTC 4 cut(s) 155, 617, 623, 689
PkrI GCNGC 4 cut(s) 113, 205, 208, 259
Ple19I CGATCG 1 cut(s) 149
Psp6I CCWGG 2 cut(s) 439, 651
PspGI CCWGG 2 cut(s) 439, 651
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 649, 697
PsuI RGATCY 2 cut(s) 123, 381
PvuI CGATCG 1 cut(s) 149
SatI GCNGC 4 cut(s) 112, 204, 207, 258
Sau3AI GATC 4 cut(s) 123, 146, 219, 381
Sau96I GGNCC 2 cut(s) 649, 697
ScrFI CCNGG 4 cut(s) 57, 58, 441, 653
SexAI ACCWGGT 1 cut(s) 439
SfaNI GCATC 1 cut(s) 569
SfuI TTCGAA 1 cut(s) 158
SinI GGWCC 2 cut(s) 649, 697
SmaI CCCGGG 1 cut(s) 58
SpeI ACTAGT 1 cut(s) 610
Sse9I AATT 3 cut(s) 45, 141, 599
SsiI CCGC 5 cut(s) 111, 403, 408, 531, 551
SspMI CTAG 3 cut(s) 21, 611, 701
StyD4I CCNGG 4 cut(s) 55, 56, 439, 651
TaaI ACNGT 4 cut(s) 200, 451, 568, 590
TaqI TCGA 4 cut(s) 128, 145, 158, 524
TasI AATT 3 cut(s) 45, 141, 599
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 4 cut(s) 155, 617, 623, 689
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 3 cut(s) 203, 206, 257
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 2 cut(s) 51, 660
TspMI CCCGGG 1 cut(s) 56
VpaK11BI GGWCC 2 cut(s) 649, 697
XapI RAATTY 2 cut(s) 141, 599
XmaI CCCGGG 1 cut(s) 56
XspI CTAG 3 cut(s) 21, 611, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.