Rh2BG414300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000520
Physical Location & Seq
Forward (+)
58488948 .. 58493853
4906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG414300.1

Sequence Viewer

Length: 423 bp
ATGGACAGCAATTTCTCAGGGGCGATTGCAAAATTGAGAGGAGCGTCGGACGATGAGATCTCGATGGGGCAGCGCGGGGATTTGATGAAGCTCAATAGCTCCGAGGAGCCAGACCGCCTCGGGAAAAAACCCGGCAAGGACATTCCACACCCCGCAAAACCAGACATCAGTGCTGCTGCAGCCAGTCTCAACCCTAAATTAGCCGCCCTTTCTCTGGGAAACCGAGGGAAACGGTTGTGCTCTGGACCTAAAGGTCGTATTTCTCGAAGGCGCAATCGAAAAGATAAGGGAGCGTCCATTGGTCTAGGCATCAAGTCCAAAGAACCAAAGGCTATTGGAGTATCAGACAAAAACAATAAAAAAGTGGCTGCAGTTGCTTCTTCTACTTCTGTCGTCGAGAGCGTCTGCTATCCACCTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.71

Weight (kDa)

10.19

Isoelectric Point (pI)

25.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 252
AccII CGCG 1 cut(s) 75
AciI CCGC 4 cut(s) 75, 115, 153, 204
AfiI CCNNNNNNNGG 1 cut(s) 214
AluBI AGCT 2 cut(s) 91, 99
AluI AGCT 2 cut(s) 91, 99
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 119
ApeKI GCWGC 5 cut(s) 70, 173, 176, 179, 368
AspA2I CCTAGG 1 cut(s) 416
AspLEI GCGC 2 cut(s) 75, 273
AspS9I GGNCC 1 cut(s) 245
AsuC2I CCSGG 1 cut(s) 132
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 1 cut(s) 245
AvrII CCTAGG 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 5 cut(s) 82, 160, 163, 191, 355
BccI CCATC 1 cut(s) 58
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 2 cut(s) 305, 417
BfmI CTRYAG 2 cut(s) 177, 369
BglII AGATCT 1 cut(s) 57
BisI GCNGC 6 cut(s) 71, 174, 177, 180, 204, 369
BlnI CCTAGG 1 cut(s) 416
BlsI GCNGC 6 cut(s) 72, 175, 178, 181, 205, 370
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 132
BsaJI CCNNGG 4 cut(s) 102, 118, 223, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 183
BseDI CCNNGG 4 cut(s) 102, 118, 223, 416
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 2 cut(s) 54, 119
BseXI GCAGC 5 cut(s) 82, 160, 163, 191, 355
Bsh1236I CGCG 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 4 cut(s) 75, 115, 153, 204
BspCNI CTCAG 1 cut(s) 29
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 108
BspMAI CTGCAG 2 cut(s) 181, 373
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 4 cut(s) 102, 118, 223, 416
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 16
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 2 cut(s) 75, 273
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 179, 374
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 2 cut(s) 177, 369
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 5 cut(s) 82, 160, 163, 191, 355
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 175
CfoI GCGC 2 cut(s) 75, 273
Cfr13I GGNCC 1 cut(s) 245
CseI GACGC 3 cut(s) 33, 282, 391
CviJI RGCY 7 cut(s) 91, 99, 109, 182, 203, 332, 368
CviKI_1 RGCY 7 cut(s) 91, 99, 109, 182, 203, 332, 368
DdeI CTNAG 1 cut(s) 16
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DrdI GACNNNNNNGTC 1 cut(s) 252
DseDI GACNNNNNNGTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
FauI CCCGC 2 cut(s) 68, 160
Fnu4HI GCNGC 6 cut(s) 71, 174, 177, 180, 204, 369
Fsp4HI GCNGC 6 cut(s) 71, 174, 177, 180, 204, 369
FspBI CTAG 2 cut(s) 305, 417
GlaI GCGC 2 cut(s) 74, 272
GluI GCNGC 6 cut(s) 71, 174, 177, 180, 204, 369
HapII CCGG 1 cut(s) 132
HgaI GACGC 3 cut(s) 33, 282, 391
HhaI GCGC 2 cut(s) 75, 273
Hin6I GCGC 2 cut(s) 73, 271
HinP1I GCGC 2 cut(s) 73, 271
HpaII CCGG 1 cut(s) 132
Hpy188I TCNGA 3 cut(s) 49, 103, 346
Hpy188III TCNNGA 5 cut(s) 61, 121, 243, 264, 397
Hpy99I CGWCG 2 cut(s) 49, 398
HpyAV CCTTC 1 cut(s) 261
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 29, 179, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 374
HpyF3I CTNAG 1 cut(s) 16
HspAI GCGC 2 cut(s) 73, 271
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 4 cut(s) 41, 104, 106, 290
LpnPI CCDG 7 cut(s) 3, 123, 145, 174, 196, 200, 228
Lsp1109I GCAGC 5 cut(s) 82, 160, 163, 191, 355
LweI GCATC 1 cut(s) 318
MaeI CTAG 2 cut(s) 305, 417
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 372
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 3 cut(s) 10, 32, 197
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 4 cut(s) 32, 97, 128, 218
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 179, 374
NciI CCSGG 1 cut(s) 132
NdeII GATC 1 cut(s) 57
NlaIV GGNNCC 1 cut(s) 108
PcsI WCGNNNNNNNCGW 2 cut(s) 262, 399
PkrI GCNGC 6 cut(s) 72, 175, 178, 181, 205, 370
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 245
PstI CTGCAG 2 cut(s) 181, 373
PsuI RGATCY 1 cut(s) 57
SatI GCNGC 6 cut(s) 71, 174, 177, 180, 204, 369
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 242
SetI ASST 6 cut(s) 93, 101, 250, 256, 418, 422
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 2 cut(s) 177, 369
SinI GGWCC 1 cut(s) 245
Sse9I AATT 3 cut(s) 10, 32, 197
SsiI CCGC 4 cut(s) 75, 115, 153, 204
SspMI CTAG 2 cut(s) 305, 417
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 234
TaqI TCGA 4 cut(s) 62, 265, 277, 396
TasI AATT 3 cut(s) 10, 32, 197
TauI GCSGC 1 cut(s) 206
TscAI CASTG 1 cut(s) 175
TseI GCWGC 5 cut(s) 70, 173, 176, 179, 368
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 245
XmaJI CCTAGG 1 cut(s) 416
XspI CTAG 2 cut(s) 305, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.