RLG00000002413

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000520
Physical Location & Seq
Forward (+)
33714581 .. 33717487
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002413

Sequence Viewer

Length: 771 bp
ATGTCTCTGCTGATAGAGAAACCAGCCGGCAAGGAGGTGGGCTGCGACCCGGCGCAACTTGCGAAACGCGGATGGCTCAAGGGCGACGACCTCAGAGAGCCGACCTGCATACGTATGTTGCCAATGAAAAACAAGGACGACGACGAGATCTGGGTTCCGGCACAGTACTGTAACAAGCCAGAAGAACCTCCTAGTGATGAAGAGCTAAAACGCCTGTCTCACCTTTTGGCAGAAGAACCAGACAAGCTCACAAAGGACGAATCAACCATCCTATGTCGCTTTCTCCCTACCCACAAGTTTGATGAACTCTTCTTTAAGCGGGCAAGGGAGAAGAAAGCCAGCAAATCCAAAGAACCAAAGGCTTCTATTCCGTTTGTCTATGAAGGAGGTGGAGATAGTCTGCACAATTGCAGGATTTGTGGCAAGAAGGACCACTTTGATGTAGATTGCTCTTACATGAACTTTGTCCCTCAGGGTGTAAATGTTGGCCCCGAGTATATGGTGGTGTGTCGGATATGTGGTCATAGGGTTAGCCAGCCTGTTGGAGATTGTCAGGCATGTGGTACGGAGGGAGGAAGTGTTGTTATGAAGCCCCCAGTTTCTCTCCTCACCAAGTCACCAGCTCGCCTCCTCGAGTCCTCCACAGCAGTTCTGGGCTCGTTCTGTCTGGAGTTCTGGGCTCGTTCTCCTCCACAACAGCAAGCGAGCAAGCCACCTCCACCTCAGTACACTCATCCGAATCGTTACACCGGTAAGGGTTGGATTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

28.61

Weight (kDa)

7.93

Isoelectric Point (pI)

56.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 113
AccII CGCG 1 cut(s) 69
AciI CCGC 2 cut(s) 69, 319
AfaI GTAC 3 cut(s) 167, 565, 728
AgeI ACCGGT 1 cut(s) 749
AluBI AGCT 3 cut(s) 205, 247, 623
AluI AGCT 3 cut(s) 205, 247, 623
Alw26I GTCTC 2 cut(s) 9, 222
Ama87I CYCGRG 2 cut(s) 491, 632
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 1 cut(s) 42
AsiGI ACCGGT 1 cut(s) 749
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 430, 488
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 3 cut(s) 212, 601, 609
AvaI CYCGRG 2 cut(s) 491, 632
AvaII GGWCC 1 cut(s) 430
AxyI CCTNAGG 1 cut(s) 471
BanII GRGCYC 2 cut(s) 659, 682
BbvI GCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 66, 275
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 9, 222
BfaI CTAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 147
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 2 cut(s) 491, 632
BmgT120I GGNCC 2 cut(s) 430, 488
BmiI GGNNCC 2 cut(s) 156, 490
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 590
BmuI ACTGGG 1 cut(s) 590
BpmI CTGGAG 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 749
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bse118I RCCGGY 2 cut(s) 26, 749
Bse1I ACTGG 1 cut(s) 596
Bse21I CCTNAGG 1 cut(s) 471
BseGI GGATG 3 cut(s) 77, 267, 733
BseMII CTCAG 3 cut(s) 106, 485, 737
BseNI ACTGG 1 cut(s) 596
BseRI GAGGAG 3 cut(s) 596, 620, 678
BseXI GCAGC 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 386
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 489
BshTI ACCGGT 1 cut(s) 749
BsiHKCI CYCGRG 2 cut(s) 491, 632
BsiSI CCGG 4 cut(s) 27, 50, 158, 750
BslFI GGGAC 1 cut(s) 452
BsmAI GTCTC 2 cut(s) 9, 222
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 1 cut(s) 489
BsoBI CYCGRG 2 cut(s) 491, 632
Bsp1286I GDGCHC 2 cut(s) 659, 682
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 2 cut(s) 69, 319
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 3 cut(s) 105, 484, 736
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 156, 490
BspMI ACCTGC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 195
BsrFI RCCGGY 2 cut(s) 26, 749
BsrI ACTGG 1 cut(s) 596
BssAI RCCGGY 2 cut(s) 26, 749
BssMI GATC 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 165, 170
Bst6I CTCTTC 2 cut(s) 195, 314
BstBAI YACGTR 1 cut(s) 113
BstC8I GCNNGC 8 cut(s) 28, 321, 340, 536, 625, 702, 706, 710
BstDEI CTNAG 3 cut(s) 92, 471, 723
BstF5I GGATG 3 cut(s) 77, 267, 733
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 9, 222
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 561
BstSCI CCNGG 1 cut(s) 48
BstSNI TACGTA 1 cut(s) 113
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 542
BstYI RGATCY 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 1 cut(s) 489
BtsCI GGATG 3 cut(s) 77, 267, 733
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 8 cut(s) 28, 321, 340, 536, 625, 702, 706, 710
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 2 cut(s) 26, 749
Cfr13I GGNCC 2 cut(s) 430, 488
Csp6I GTAC 3 cut(s) 166, 564, 727
CspAI ACCGGT 1 cut(s) 749
CviAII CATG 2 cut(s) 457, 558
CviQI GTAC 3 cut(s) 166, 564, 727
DdeI CTNAG 3 cut(s) 92, 471, 723
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 195, 314
EarI CTCTTC 2 cut(s) 195, 314
Eco105I TACGTA 1 cut(s) 113
Eco24I GRGCYC 2 cut(s) 659, 682
Eco47I GGWCC 1 cut(s) 430
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 2 cut(s) 491, 632
EcoT38I GRGCYC 2 cut(s) 659, 682
FaeI CATG 2 cut(s) 460, 561
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 452
FatI CATG 2 cut(s) 456, 557
FauI CCCGC 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 3 cut(s) 84, 254, 720
FriOI GRGCYC 2 cut(s) 659, 682
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 689
HaeIII GGCC 1 cut(s) 489
HapII CCGG 4 cut(s) 27, 50, 158, 750
HhaI GCGC 1 cut(s) 55
Hin1II CATG 2 cut(s) 460, 561
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 3 cut(s) 260, 635, 739
HpaII CCGG 4 cut(s) 27, 50, 158, 750
HphI GGTGA 3 cut(s) 212, 601, 609
Hpy166II GTNNAC 1 cut(s) 729
Hpy188I TCNGA 3 cut(s) 95, 513, 738
Hpy188III TCNNGA 1 cut(s) 668
Hpy8I GTNNAC 1 cut(s) 729
Hpy99I CGWCG 3 cut(s) 89, 143, 146
HpyAV CCTTC 2 cut(s) 377, 421
HpyCH4III ACNGT 2 cut(s) 165, 170
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 108, 403, 411, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 3 cut(s) 92, 471, 723
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 2 cut(s) 460, 561
HspAI GCGC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 147
LguI GCTCTTC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 29
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 3 cut(s) 170, 615, 743
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 5 cut(s) 194, 212, 245, 301, 343
MfeI CAATTG 1 cut(s) 406
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 2 cut(s) 659, 682
MluCI AATT 1 cut(s) 406
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 3 cut(s) 491, 523, 740
MroNI GCCGGC 1 cut(s) 26
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 2 cut(s) 113, 438
MspI CCGG 4 cut(s) 27, 50, 158, 750
MspR9I CCNGG 1 cut(s) 50
MunI CAATTG 1 cut(s) 406
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 59
NaeI GCCGGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 50
NdeII GATC 1 cut(s) 147
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 460, 561
NlaIV GGNNCC 2 cut(s) 156, 490
NmuCI GTSAC 1 cut(s) 615
NspI RCATGY 1 cut(s) 561
PaeR7I CTCGAG 1 cut(s) 632
PciSI GCTCTTC 1 cut(s) 195
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 2 cut(s) 260, 739
PinAI ACCGGT 1 cut(s) 749
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
Ppu21I YACGTR 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 156, 490
PspPI GGNCC 2 cut(s) 430, 488
PspXI VCTCGAGB 1 cut(s) 632
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 3 cut(s) 167, 565, 728
RsaNI GTAC 3 cut(s) 166, 564, 727
RseI CAYNNNNRTG 2 cut(s) 113, 438
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 2 cut(s) 430, 488
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 2 cut(s) 659, 682
Sfr274I CTCGAG 1 cut(s) 632
SinI GGWCC 1 cut(s) 430
SlaI CTCGAG 1 cut(s) 632
SmiMI CAYNNNNRTG 2 cut(s) 113, 438
SmlI CTYRAG 2 cut(s) 77, 632
SmoI CTYRAG 2 cut(s) 77, 632
SnaBI TACGTA 1 cut(s) 113
Sse9I AATT 1 cut(s) 406
SsiI CCGC 2 cut(s) 69, 319
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 165, 170
TaiI ACGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 633
TasI AATT 1 cut(s) 406
TatI WGTACW 2 cut(s) 165, 726
TfiI GAWTC 2 cut(s) 260, 739
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseFI GTSAC 1 cut(s) 615
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 615
TspDTI ATGAA 6 cut(s) 140, 213, 318, 396, 473, 602
TspGWI ACGGA 2 cut(s) 360, 581
VpaK11BI GGWCC 1 cut(s) 430
XceI RCATGY 1 cut(s) 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XhoI CTCGAG 1 cut(s) 632
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.