pycom08g17230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000520
Physical Location & Seq
Reverse (-)
17372003 .. 17373052
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g17230.2

Sequence Viewer

Length: 816 bp
ATGTCCTCCTCCGGACCCCCAGCCAGTGATCCCTCATCTGAGGGCAAGCTCCCAGAATCCGTCTCATCAGACGAAGCCATGAACTGCCGAACCCCAGACAGTGATGAGGCTTTGGAAATCTTCGTTTGGAACGGCCGACCCTCAGCCAGTAAACCCCCATGTGAGACCAAGCTCCGACAAAACGTCGATTGGAACAGCCGACCCGGAGCCAGTGATCGCCTGTCCGTGGCCAAGTTCTCAGATGACCTCGTCTTCGATTGGTATAATCGAGGCCAACCGAAGGAACGAGAGAAGCATACAGAAGCACTCCATCTTCGAAAACCAGGATGCCTCAAACTTGTGGAGGAGGATACAACTCCAGCTTCTTCGGAGGAGAGAGTTTCAAGCTGTCCAGAGGATACAACTCCACCTTCTTCAGAGGAGAGAATTCCAATCTGTCGAGAGGATACAACTCCAGCTTCTTCCGAGGAGAGAATTTCAAGCTGTCCAGAGGATACAACTCCAATCTGTCCAGGGGATACAACTCCAATCTTTCCAGAGGAGAGAATTCCAATCTGTCGAGCGGATACTACTCCAACCTGCCCAATTTGTATTCATGGTCGCCACTGGATGTCATTCTGCCCCTACTTGCGTCGTGTCCCGGATGACGTAACTAATATTGGCGAGGGCTACGCAATATGTTGTCAGGTTTGTAGTCTGTACAATAACCAGTGTGGACATAATATGGCGTATGCTACCCCCATTTTTTGTTTTGTTTGTCGCAGCAGTCAACACTTTAGTCGGGACTGCCCTGAATTTAAAGATGTCAAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.16

Weight (kDa)

4.91

Isoelectric Point (pI)

59.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 587
AccBSI CCGCTC 1 cut(s) 563
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 1 cut(s) 563
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 2 cut(s) 133, 228
AcsI RAATTY 4 cut(s) 426, 474, 546, 794
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 1 cut(s) 701
AfiI CCNNNNNNNGG 2 cut(s) 226, 280
AgsI TTSAA 2 cut(s) 384, 480
AhdI GACNNNNNGTC 1 cut(s) 182
AjnI CCWGG 2 cut(s) 322, 511
AluBI AGCT 6 cut(s) 49, 172, 362, 387, 458, 483
AluI AGCT 6 cut(s) 49, 172, 362, 387, 458, 483
Alw26I GTCTC 2 cut(s) 67, 158
AlwI GGATC 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 3 cut(s) 133, 228, 271
ApeKI GCWGC 1 cut(s) 762
ApoI RAATTY 4 cut(s) 426, 474, 546, 794
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 204, 641
AsuII TTCGAA 1 cut(s) 316
AvaII GGWCC 1 cut(s) 14
BalI TGGCCA 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 244
BbvCI CCTCAGC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 774
BccI CCATC 1 cut(s) 318
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 2 cut(s) 324, 513
BciVI GTATCC 6 cut(s) 343, 391, 439, 487, 511, 559
BcnI CCSGG 2 cut(s) 204, 641
BcoDI GTCTC 2 cut(s) 67, 158
BfuAI ACCTGC 1 cut(s) 587
BfuI GTATCC 6 cut(s) 343, 391, 439, 487, 511, 559
BisI GCNGC 1 cut(s) 763
BlsI GCNGC 1 cut(s) 764
Bme1390I CCNGG 4 cut(s) 204, 324, 513, 641
Bme18I GGWCC 1 cut(s) 14
BmeRI GACNNNNNGTC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 16, 208
BmrFI CCNGG 4 cut(s) 204, 324, 513, 641
BmsI GCATC 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 244
BpmI CTGGAG 2 cut(s) 342, 438
Bpu10I CCTNAGC 1 cut(s) 142
Bpu14I TTCGAA 1 cut(s) 316
BpuMI CCSGG 2 cut(s) 204, 641
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 3 cut(s) 225, 465, 512
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 280
Bse1I ACTGG 5 cut(s) 24, 147, 210, 611, 709
BseAI TCCGGA 1 cut(s) 11
BseBI CCWGG 2 cut(s) 324, 513
BseDI CCNNGG 3 cut(s) 225, 465, 512
BseGI GGATG 3 cut(s) 332, 615, 649
BseLI CCNNNNNNNGG 2 cut(s) 226, 280
BseMII CTCAG 3 cut(s) 30, 156, 252
BseNI ACTGG 5 cut(s) 24, 147, 210, 611, 709
BseRI GAGGAG 5 cut(s) 359, 386, 434, 482, 554
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 774
BseYI CCCAGC 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 3 cut(s) 135, 230, 273
BsiEI CGRYCG 1 cut(s) 136
BsiSI CCGG 3 cut(s) 12, 204, 641
BslFI GGGAC 2 cut(s) 623, 797
BslI CCNNNNNNNGG 2 cut(s) 226, 280
BsmAI GTCTC 2 cut(s) 67, 158
BsmBI CGTCTC 1 cut(s) 67
BsmFI GGGAC 2 cut(s) 623, 797
BsnI GGCC 3 cut(s) 135, 230, 273
Bso31I GGTCTC 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 316
Bsp13I TCCGGA 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 699
Bsp143I GATC 2 cut(s) 28, 214
BspACI CCGC 1 cut(s) 563
BspANI GGCC 3 cut(s) 135, 230, 273
BspCNI CTCAG 3 cut(s) 31, 155, 251
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 16, 208
BspMI ACCTGC 1 cut(s) 587
BspPI GGATC 1 cut(s) 23
BspT104I TTCGAA 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 563
BsrGI TGTACA 1 cut(s) 699
BsrI ACTGG 5 cut(s) 24, 147, 210, 611, 709
BssECI CCNNGG 3 cut(s) 225, 465, 512
BssMI GATC 2 cut(s) 28, 214
Bst2UI CCWGG 2 cut(s) 324, 513
Bst4CI ACNGT 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 699
BstBI TTCGAA 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 3 cut(s) 39, 142, 238
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 3 cut(s) 332, 615, 649
BstKTI GATC 2 cut(s) 31, 217
BstMAI GTCTC 2 cut(s) 67, 158
BstMBI GATC 2 cut(s) 28, 214
BstMCI CGRYCG 1 cut(s) 136
BstNI CCWGG 2 cut(s) 324, 513
BstSCI CCNGG 4 cut(s) 202, 322, 511, 639
BstV1I GCAGC 1 cut(s) 774
BstV2I GAAGAC 1 cut(s) 244
BstZI CGGCCG 1 cut(s) 133
BsuI GTATCC 6 cut(s) 343, 391, 439, 487, 511, 559
BsuRI GGCC 3 cut(s) 135, 230, 273
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 3 cut(s) 332, 615, 649
BtsIMutI CAGTG 5 cut(s) 31, 106, 217, 604, 716
BveI ACCTGC 1 cut(s) 587
Cac8I GCNNGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 620
Csp6I GTAC 1 cut(s) 700
CviAII CATG 3 cut(s) 79, 159, 596
CviQI GTAC 1 cut(s) 700
DdeI CTNAG 3 cut(s) 39, 142, 238
DpnI GATC 2 cut(s) 30, 216
DpnII GATC 2 cut(s) 28, 214
DraI TTTAAA 1 cut(s) 799
DriI GACNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 2 cut(s) 133, 228
EagI CGGCCG 1 cut(s) 133
Eam1105I GACNNNNNGTC 1 cut(s) 182
EclXI CGGCCG 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 14
Eco52I CGGCCG 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 399
EcoRI GAATTC 2 cut(s) 426, 546
EcoRII CCWGG 2 cut(s) 322, 511
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 3 cut(s) 82, 162, 599
FaiI YATR 9 cut(s) 80, 160, 264, 297, 597, 679, 720, 725, 732
FaqI GGGAC 2 cut(s) 623, 797
FatI CATG 3 cut(s) 78, 158, 595
Fnu4HI GCNGC 1 cut(s) 763
FokI GGATG 3 cut(s) 339, 622, 656
Fsp4HI GCNGC 1 cut(s) 763
GluI GCNGC 1 cut(s) 763
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 2 cut(s) 342, 438
HaeIII GGCC 3 cut(s) 135, 230, 273
HapII CCGG 3 cut(s) 12, 204, 641
HgaI GACGC 1 cut(s) 620
Hin1II CATG 3 cut(s) 82, 162, 599
HincII GTYRAC 1 cut(s) 770
HindII GTYRAC 1 cut(s) 770
HinfI GANTC 1 cut(s) 56
HpaII CCGG 3 cut(s) 12, 204, 641
Hpy166II GTNNAC 3 cut(s) 152, 716, 770
Hpy188I TCNGA 7 cut(s) 40, 70, 176, 241, 370, 418, 466
Hpy188III TCNNGA 6 cut(s) 12, 392, 440, 488, 536, 782
Hpy8I GTNNAC 3 cut(s) 152, 716, 770
Hpy99I CGWCG 2 cut(s) 188, 636
HpyAV CCTTC 2 cut(s) 274, 420
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 2 cut(s) 183, 648
HpyF3I CTNAG 3 cut(s) 39, 142, 238
HpySE526I ACGT 2 cut(s) 183, 648
Hsp92II CATG 3 cut(s) 82, 162, 599
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 2 cut(s) 28, 214
LmnI GCTCC 3 cut(s) 54, 177, 206
Lsp1109I GCAGC 1 cut(s) 774
LweI GCATC 1 cut(s) 317
MaeII ACGT 2 cut(s) 183, 648
MaeIII GTNAC 1 cut(s) 649
MalI GATC 2 cut(s) 30, 216
MbiI CCGCTC 1 cut(s) 563
MboI GATC 2 cut(s) 28, 214
MboII GAAGA 6 cut(s) 112, 244, 305, 357, 405, 453
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 5 cut(s) 426, 474, 546, 585, 794
MluNI TGGCCA 1 cut(s) 230
MmeI TCCRAC 2 cut(s) 199, 599
Mox20I TGGCCA 1 cut(s) 230
MroI TCCGGA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 230
MseI TTAA 1 cut(s) 798
Msp20I TGGCCA 1 cut(s) 230
MspI CCGG 3 cut(s) 12, 204, 641
MspR9I CCNGG 4 cut(s) 204, 324, 513, 641
MvaI CCWGG 2 cut(s) 324, 513
NciI CCSGG 2 cut(s) 204, 641
NdeII GATC 2 cut(s) 28, 214
NlaIII CATG 3 cut(s) 82, 162, 599
NlaIV GGNNCC 2 cut(s) 16, 208
NspV TTCGAA 1 cut(s) 316
PfeI GAWTC 1 cut(s) 56
PflFI GACNNNGTC 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 639
PkrI GCNGC 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 322, 511
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 2 cut(s) 322, 511
PspN4I GGNNCC 2 cut(s) 16, 208
PspPI GGNCC 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 1 cut(s) 701
RsaNI GTAC 1 cut(s) 700
SaqAI TTAA 1 cut(s) 798
SatI GCNGC 1 cut(s) 763
Sau3AI GATC 2 cut(s) 28, 214
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 4 cut(s) 204, 324, 513, 641
SfaNI GCATC 1 cut(s) 317
SfuI TTCGAA 1 cut(s) 316
SinI GGWCC 1 cut(s) 14
Sse9I AATT 5 cut(s) 426, 474, 546, 585, 794
SsiI CCGC 1 cut(s) 563
SspI AATATT 1 cut(s) 658
StyD4I CCNGG 4 cut(s) 202, 322, 511, 639
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 2 cut(s) 186, 651
TaqI TCGA 6 cut(s) 186, 255, 268, 316, 439, 559
TasI AATT 5 cut(s) 426, 474, 546, 585, 794
TatI WGTACW 1 cut(s) 699
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 798
Tru9I TTAA 1 cut(s) 798
TscAI CASTG 5 cut(s) 31, 106, 217, 611, 716
TseI GCWGC 1 cut(s) 762
TspDTI ATGAA 2 cut(s) 95, 584
TspGWI ACGGA 2 cut(s) 49, 214
TspRI CASTG 5 cut(s) 31, 106, 217, 611, 716
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 4 cut(s) 426, 474, 546, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.