Rroxscaffold_4G00290390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000520
Physical Location & Seq
Reverse (-)
10913657 .. 10914169
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290390.1

Sequence Viewer

Length: 513 bp
ATGGATATTTCTGGAATCACAGTGAGACCAGCAGTGGGCAAGGAGGAGAAGTACTCTGAAGAAGATCTAAAGGCTGCCGCCGGAGTCATCAAAAGAGAAGGATGTCAGATTTGTGGTGATGGTCACCAACACTTTATTCGTTGCCCGTACCTGGAGTGTGTTCCACCTGGTGCAACTGTTGGCCCTGACTATCTAGTAATATGTGACTTATGTGGTTATGAGTTATTGCAGCCTACCGCGGCTCATTGTTGGATGTGCGGTAAGTGGGGAGGACGTGCGGTGGAGGCGTCTACGTTCGATGAGAGCTATCGTAACCACCTAGAAGAAGATTACATAGCAGAACCAATTGTGTATGCAGAGTACATAGACCTAGACAACTACACAGCACCAGAAACAGTGCATATTCAGAAGACTAAACATCAAGATCACATAAAGAAACATCATATAAAAACTAAAAGCCGGACTCTGAAGAAAAACAAAACTAAAAGTCGGACACTGAAGAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.28

Weight (kDa)

8.07

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 290
AccII CGCG 1 cut(s) 239
AciI CCGC 5 cut(s) 78, 237, 239, 258, 278
AcuI CTGAAG 2 cut(s) 78, 488
AcyI GRCGYC 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 3 cut(s) 53, 149, 362
AfiI CCNNNNNNNGG 2 cut(s) 35, 151
AjiI CACGTC 1 cut(s) 275
AjnI CCWGG 2 cut(s) 150, 166
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 19
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 2 cut(s) 74, 229
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 116, 128
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 2 cut(s) 61, 241
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 2 cut(s) 152, 168
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 3 cut(s) 194, 320, 371
BglII AGATCT 1 cut(s) 64
BisI GCNGC 4 cut(s) 75, 78, 230, 240
BlsI GCNGC 4 cut(s) 76, 79, 231, 241
BmcAI AGTACT 1 cut(s) 53
Bme1390I CCNGG 2 cut(s) 152, 168
BmgBI CACGTC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 152, 168
BpiI GAAGAC 1 cut(s) 416
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 151
BseBI CCWGG 2 cut(s) 152, 168
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 107, 258
BseLI CCNNNNNNNGG 2 cut(s) 35, 151
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 61, 241
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 81, 460
BslI CCNNNNNNNGG 2 cut(s) 35, 151
BsmAI GTCTC 1 cut(s) 19
BsnI GGCC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 64, 424
BspACI CCGC 5 cut(s) 78, 237, 239, 258, 278
BspANI GGCC 1 cut(s) 183
BspFNI CGCG 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 64, 424
BssNI GRCGYC 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 152, 168
Bst4CI ACNGT 3 cut(s) 22, 178, 397
BstACI GRCGYC 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 237
BstEII GGTNACC 1 cut(s) 122
BstF5I GGATG 2 cut(s) 107, 258
BstFNI CGCG 1 cut(s) 239
BstKTI GATC 2 cut(s) 67, 427
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 2 cut(s) 64, 424
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 2 cut(s) 152, 168
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 2 cut(s) 150, 166
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 61, 241
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 237
BtrI CACGTC 1 cut(s) 275
BtsCI GGATG 2 cut(s) 107, 258
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 4 cut(s) 27, 39, 402, 494
Cfr13I GGNCC 1 cut(s) 182
Cfr42I CCGCGG 1 cut(s) 240
CseI GACGC 1 cut(s) 276
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 3 cut(s) 52, 148, 361
CviJI RGCY 6 cut(s) 74, 183, 232, 242, 306, 459
CviKI_1 RGCY 6 cut(s) 74, 183, 232, 242, 306, 459
CviQI GTAC 3 cut(s) 52, 148, 361
DpnI GATC 2 cut(s) 66, 426
DpnII GATC 2 cut(s) 64, 424
DraIII CACNNNGTG 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 19
Eco57I CTGAAG 2 cut(s) 78, 488
Eco91I GGTNACC 1 cut(s) 122
EcoO65I GGTNACC 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 150, 166
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 4 cut(s) 75, 78, 230, 240
FokI GGATG 2 cut(s) 114, 265
Fsp4HI GCNGC 4 cut(s) 75, 78, 230, 240
FspBI CTAG 3 cut(s) 194, 320, 371
GluI GCNGC 4 cut(s) 75, 78, 230, 240
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 183
HapII CCGG 2 cut(s) 81, 460
HgaI GACGC 1 cut(s) 276
Hin1I GRCGYC 1 cut(s) 287
HinfI GANTC 3 cut(s) 15, 84, 463
HpaII CCGG 2 cut(s) 81, 460
HphI GGTGA 2 cut(s) 116, 128
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 5 cut(s) 58, 108, 408, 468, 492
Hpy188III TCNNGA 2 cut(s) 12, 422
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 3 cut(s) 22, 178, 397
HpyCH4IV ACGT 2 cut(s) 274, 293
HpyCH4V TGCA 4 cut(s) 173, 229, 356, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpySE526I ACGT 2 cut(s) 274, 293
Hsp92I GRCGYC 1 cut(s) 287
KspI CCGCGG 1 cut(s) 240
Kzo9I GATC 2 cut(s) 64, 424
LpnPI CCDG 9 cut(s) 42, 94, 137, 153, 164, 180, 198, 402, 473
Lsp1109I GCAGC 2 cut(s) 61, 241
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 3 cut(s) 194, 320, 371
MaeII ACGT 2 cut(s) 274, 293
MaeIII GTNAC 3 cut(s) 122, 203, 311
MalI GATC 2 cut(s) 66, 426
MboI GATC 2 cut(s) 64, 424
MboII GAAGA 7 cut(s) 71, 74, 335, 338, 421, 481, 511
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 1 cut(s) 64
MluCI AATT 1 cut(s) 345
MlyI GAGTC 2 cut(s) 93, 457
MmeI TCCRAC 2 cut(s) 230, 470
MnlI CCTC 3 cut(s) 37, 263, 277
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 2 cut(s) 81, 460
MspR9I CCNGG 2 cut(s) 152, 168
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 2 cut(s) 152, 168
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 2 cut(s) 64, 424
NmuCI GTSAC 2 cut(s) 122, 203
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 4 cut(s) 76, 79, 231, 241
PleI GAGTC 2 cut(s) 92, 457
PpsI GAGTC 2 cut(s) 92, 457
Psp6I CCWGG 2 cut(s) 150, 166
PspEI GGTNACC 1 cut(s) 122
PspGI CCWGG 2 cut(s) 150, 166
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 3 cut(s) 53, 149, 362
RsaNI GTAC 3 cut(s) 52, 148, 361
SacII CCGCGG 1 cut(s) 240
SatI GCNGC 4 cut(s) 75, 78, 230, 240
Sau3AI GATC 2 cut(s) 64, 424
Sau96I GGNCC 1 cut(s) 182
ScaI AGTACT 1 cut(s) 53
SchI GAGTC 2 cut(s) 93, 457
ScrFI CCNGG 2 cut(s) 152, 168
SetI ASST 7 cut(s) 153, 169, 277, 296, 308, 321, 372
SexAI ACCWGGT 1 cut(s) 166
Sfr303I CCGCGG 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 240
Sse9I AATT 1 cut(s) 345
SsiI CCGC 5 cut(s) 78, 237, 239, 258, 278
SspMI CTAG 3 cut(s) 194, 320, 371
StyD4I CCNGG 2 cut(s) 150, 166
TaaI ACNGT 3 cut(s) 22, 178, 397
TaiI ACGT 2 cut(s) 277, 296
TaqI TCGA 1 cut(s) 297
TasI AATT 1 cut(s) 345
TatI WGTACW 2 cut(s) 51, 360
TauI GCSGC 2 cut(s) 80, 242
TfiI GAWTC 1 cut(s) 15
TscAI CASTG 4 cut(s) 27, 39, 402, 501
TseFI GTSAC 2 cut(s) 122, 203
TseI GCWGC 2 cut(s) 74, 229
Tsp45I GTSAC 2 cut(s) 122, 203
TspRI CASTG 4 cut(s) 27, 39, 402, 501
XmiI GTMKAC 1 cut(s) 290
XspI CTAG 3 cut(s) 194, 320, 371
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.