MD17G1268200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000520
Physical Location & Seq
Forward (+)
32810273 .. 32812574
2302 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1268200.v1.1.491

Sequence Viewer

Length: 243 bp
ATGAGTGAAAGGGGTTCCAAGCAGTTCGGAGGACGTCTTAGCAACCCCACTGATGAGGACACGAGTCTTGGTATGAATTGGCGAGTTTGCCTCAAGGTTGGCCACTGGGGCTGCGACTTCCCCTACCACCGTCGTGTCCCAAATGGTGTAACTGAGGTTGGCAAGGGGTATGTAATAGCTTATTTGTGTTGTCCTGCGGTGCATAACAAGTGCAAGCATAATATCCAGCGCGGTTTCGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.98

Weight (kDa)

9.17

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 37
AccII CGCG 2 cut(s) 231, 239
AciI CCGC 2 cut(s) 197, 231
AcoI YGGCCR 1 cut(s) 100
AcyI GRCGYC 1 cut(s) 34
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 231
BalI TGGCCA 1 cut(s) 102
BauI CACGAG 1 cut(s) 61
BbvI GCAGC 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 16
BmrI ACTGGG 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 115
BoxI GACNNNNGTC 1 cut(s) 63
BplI GAGNNNNNCTC 2 cut(s) 75, 107
BpuEI CTTGAG 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 98
Bsh1236I CGCG 2 cut(s) 231, 239
BshFI GGCC 1 cut(s) 102
BslFI GGGAC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 102
BspACI CCGC 2 cut(s) 197, 231
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 2 cut(s) 231, 239
BspLI GGNNCC 1 cut(s) 16
BsrI ACTGG 1 cut(s) 110
BssNI GRCGYC 1 cut(s) 34
BssSI CACGAG 1 cut(s) 61
Bst2BI CACGAG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 38, 153
BstFNI CGCG 2 cut(s) 231, 239
BstHHI GCGC 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstPAI GACNNNNGTC 1 cut(s) 63
BstUI CGCG 2 cut(s) 231, 239
BstV1I GCAGC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 48, 103
Cac8I GCNNGC 1 cut(s) 215
CfoI GCGC 1 cut(s) 231
CviJI RGCY 3 cut(s) 102, 111, 179
CviKI_1 RGCY 3 cut(s) 102, 111, 179
DdeI CTNAG 2 cut(s) 38, 153
EaeI YGGCCR 1 cut(s) 100
FaiI YATR 4 cut(s) 74, 171, 204, 219
FaqI GGGAC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 112
GlaI GCGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 112
HaeIII GGCC 1 cut(s) 102
HhaI GCGC 1 cut(s) 231
Hin1I GRCGYC 1 cut(s) 34
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 29
Hpy99I CGWCG 1 cut(s) 135
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 202, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 2 cut(s) 38, 153
HpySE526I ACGT 1 cut(s) 34
Hsp92I GRCGYC 1 cut(s) 34
HspAI GCGC 1 cut(s) 229
LpnPI CCDG 3 cut(s) 91, 207, 239
Lsp1109I GCAGC 1 cut(s) 98
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 1 cut(s) 76
MluNI TGGCCA 1 cut(s) 102
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 4 cut(s) 23, 49, 101, 148
Mox20I TGGCCA 1 cut(s) 102
MscI TGGCCA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 102
MvnI CGCG 2 cut(s) 231, 239
MwoI GCNNNNNNNGC 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 132
PkrI GCNGC 1 cut(s) 113
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PshAI GACNNNNGTC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 132
SatI GCNGC 1 cut(s) 112
SchI GAGTC 1 cut(s) 73
SetI ASST 4 cut(s) 37, 99, 159, 181
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 76
SsiI CCGC 2 cut(s) 197, 231
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 37
TasI AATT 1 cut(s) 76
TscAI CASTG 2 cut(s) 55, 110
TseI GCWGC 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 89
TspRI CASTG 2 cut(s) 55, 110
ZraI GACGTC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.