pycom07g01510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000520
Physical Location & Seq
Forward (+)
1133732 .. 1135306
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01510.1

Sequence Viewer

Length: 777 bp
ATGTCCCAAACACACAGATATGAAGAAAAAGGGTGTGTTAAAGACTATCCAACTCATCTCAAAATAGAAAACGTTGTTGAAGAGGCTATGGCTCAACTCCAACTTGGCGAGGAGAATACTACTAGTCCAAATTCACAAACCCTTGTAAAGTTTGCTAGACCTTTCAAATTCACAGTCCCTTGTGAAGTTTGTGGTGTGGTTGGCCACTTTAATGATAGATGCCCCTCCATCGAAGTAGGCCTCCCAGACAACGTAACTGAGGTTCCCAAGGGCTATGAAATAGTAACCTTCCGTGGTGGGAAGCGTGCTGTTGGGATCATGTTCTGTGGTTATTGTAAAATGATCCGTGACCGCAAGAACGAGGACTGCCTGGATAAAAGCGAAATGATCGCACTAATGAACTACGTTCTGAAGCCCACTCCCCCTTTTATAGGTCCTTTTTGCGGAGTGGTTGGCCACTTTAATGATGATTACCCCTACATGATTCGTGTTCCAGACAATGTAACTGAGGTTGGCAAGGGCTATGAAATAGTTACCTTCCGTGGTGAGAGGCATGCTGAAAGTATGGTATGTGGTTATTGTCATATCGGTGCTGACCATCAAAACGATGACTGCCCGCATAAGGGTAAAATCATTGCACGAAGAAACTCCCTTCGGAAGACACCAATTGATCCAACTATTTTTGTTCCGTTGTGCAAATTCAATTCCTTGTGCACTAGAGAAAGGCCTCGTCTTGGATTCGCTGGATTGATGCTGTGGTTTGCAGCTGTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.12

Weight (kDa)

7.51

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 352, 444, 617
AclI AACGTT 1 cut(s) 72
AclWI GGATC 3 cut(s) 323, 337, 665
AcoI YGGCCR 2 cut(s) 202, 454
AcsI RAATTY 3 cut(s) 130, 167, 698
AcuI CTGAAG 1 cut(s) 431
AfiI CCNNNNNNNGG 5 cut(s) 431, 443, 622, 623, 734
AgsI TTSAA 3 cut(s) 80, 166, 703
AhlI ACTAGT 1 cut(s) 122
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 1 cut(s) 767
AluI AGCT 1 cut(s) 767
Alw21I GWGCWC 1 cut(s) 716
Alw44I GTGCAC 1 cut(s) 712
AlwI GGATC 3 cut(s) 323, 337, 665
AoxI GGCC 4 cut(s) 202, 238, 454, 725
ApaLI GTGCAC 1 cut(s) 712
ApeKI GCWGC 1 cut(s) 764
ApoI RAATTY 3 cut(s) 130, 167, 698
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AspS9I GGNCC 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 557
AvaII GGWCC 1 cut(s) 434
BaeGI GKGCMC 1 cut(s) 716
BalI TGGCCA 2 cut(s) 204, 456
BbsI GAAGAC 1 cut(s) 665
Bbv12I GWGCWC 1 cut(s) 716
BccI CCATC 2 cut(s) 236, 606
BciT130I CCWGG 1 cut(s) 371
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 3 cut(s) 123, 156, 717
BisI GCNGC 1 cut(s) 765
BlsI GCNGC 1 cut(s) 766
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 2 cut(s) 209, 741
BpiI GAAGAC 1 cut(s) 665
BsaJI CCNNGG 3 cut(s) 267, 292, 541
Bsc4I CCNNNNNNNGG 5 cut(s) 431, 443, 622, 623, 734
Bse3DI GCAATG 1 cut(s) 633
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 3 cut(s) 267, 292, 541
BseLI CCNNNNNNNGG 5 cut(s) 431, 443, 622, 623, 734
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 2 cut(s) 249, 498
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 716
BshFI GGCC 4 cut(s) 204, 240, 456, 727
BsiHKAI GWGCWC 1 cut(s) 716
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 5 cut(s) 431, 443, 622, 623, 734
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 4 cut(s) 204, 240, 456, 727
Bsp1286I GDGCHC 1 cut(s) 716
Bsp143I GATC 4 cut(s) 315, 342, 387, 670
BspACI CCGC 3 cut(s) 352, 444, 617
BspANI GGCC 4 cut(s) 204, 240, 456, 727
BspCNI CTCAG 2 cut(s) 250, 499
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 3 cut(s) 323, 337, 665
BsrDI GCAATG 1 cut(s) 633
BssECI CCNNGG 3 cut(s) 267, 292, 541
BssMI GATC 4 cut(s) 315, 342, 387, 670
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 3 cut(s) 306, 555, 617
BstDEI CTNAG 3 cut(s) 258, 507, 774
BstDSI CCRYGG 2 cut(s) 292, 541
BstENI CCTNNNNNAGG 1 cut(s) 429
BstKTI GATC 4 cut(s) 318, 345, 390, 673
BstMBI GATC 4 cut(s) 315, 342, 387, 670
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 1 cut(s) 557
BstSCI CCNGG 1 cut(s) 369
BstSLI GKGCMC 1 cut(s) 716
BstV2I GAAGAC 1 cut(s) 665
BsuRI GGCC 4 cut(s) 204, 240, 456, 727
BtgI CCRYGG 2 cut(s) 292, 541
Cac8I GCNNGC 3 cut(s) 306, 555, 617
Cfr13I GGNCC 1 cut(s) 434
CviAII CATG 3 cut(s) 319, 481, 554
DdeI CTNAG 3 cut(s) 258, 507, 774
DpnI GATC 4 cut(s) 317, 344, 389, 672
DpnII GATC 4 cut(s) 315, 342, 387, 670
EaeI YGGCCR 2 cut(s) 202, 454
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 267
Eco147I AGGCCT 2 cut(s) 240, 727
Eco47I GGWCC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 3 cut(s) 322, 484, 557
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 318, 480, 553
FauI CCCGC 1 cut(s) 624
Fnu4HI GCNGC 1 cut(s) 765
Fsp4HI GCNGC 1 cut(s) 765
FspBI CTAG 3 cut(s) 123, 156, 717
GluI GCNGC 1 cut(s) 765
HaeIII GGCC 4 cut(s) 204, 240, 456, 727
Hin1II CATG 3 cut(s) 322, 484, 557
HinfI GANTC 2 cut(s) 484, 738
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 1 cut(s) 714
Hpy188I TCNGA 2 cut(s) 411, 657
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 1 cut(s) 714
HpyAV CCTTC 3 cut(s) 298, 547, 662
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 3 cut(s) 72, 252, 405
HpyCH4V TGCA 4 cut(s) 638, 696, 714, 764
HpyF3I CTNAG 3 cut(s) 258, 507, 774
HpySE526I ACGT 3 cut(s) 72, 252, 405
Hsp92II CATG 3 cut(s) 322, 484, 557
Kzo9I GATC 4 cut(s) 315, 342, 387, 670
LpnPI CCDG 5 cut(s) 258, 356, 383, 507, 729
LweI GCATC 2 cut(s) 209, 741
MaeI CTAG 3 cut(s) 123, 156, 717
MaeII ACGT 3 cut(s) 72, 252, 405
MaeIII GTNAC 5 cut(s) 253, 283, 347, 502, 532
MalI GATC 4 cut(s) 317, 344, 389, 672
MboI GATC 4 cut(s) 315, 342, 387, 670
MboII GAAGA 4 cut(s) 35, 92, 654, 670
MfeI CAATTG 1 cut(s) 666
MhlI GDGCHC 1 cut(s) 716
MlsI TGGCCA 2 cut(s) 204, 456
MluCI AATT 5 cut(s) 130, 167, 666, 698, 703
MluNI TGGCCA 2 cut(s) 204, 456
MmeI TCCRAC 3 cut(s) 74, 124, 698
MnlI CCTC 9 cut(s) 76, 103, 235, 251, 253, 355, 502, 543, 738
Mox20I TGGCCA 2 cut(s) 204, 456
MscI TGGCCA 2 cut(s) 204, 456
MseI TTAA 3 cut(s) 39, 210, 462
MslI CAYNNNNRTG 4 cut(s) 18, 210, 462, 588
Msp20I TGGCCA 2 cut(s) 204, 456
MspA1I CMGCKG 1 cut(s) 767
MspR9I CCNGG 1 cut(s) 371
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 1 cut(s) 371
NdeII GATC 4 cut(s) 315, 342, 387, 670
NlaIII CATG 3 cut(s) 322, 484, 557
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 347
NspI RCATGY 1 cut(s) 557
PaeI GCATGC 1 cut(s) 557
PceI AGGCCT 2 cut(s) 240, 727
PfeI GAWTC 2 cut(s) 484, 738
PkrI GCNGC 1 cut(s) 766
PpuMI RGGWCCY 1 cut(s) 434
Psp1406I AACGTT 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 434
PspPPI RGGWCCY 1 cut(s) 434
PsrI GAACNNNNNNTAC 2 cut(s) 246, 278
PvuII CAGCTG 1 cut(s) 767
RseI CAYNNNNRTG 4 cut(s) 18, 210, 462, 588
SaqAI TTAA 3 cut(s) 39, 210, 462
SatI GCNGC 1 cut(s) 765
Sau3AI GATC 4 cut(s) 315, 342, 387, 670
Sau96I GGNCC 1 cut(s) 434
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 1 cut(s) 716
SfaNI GCATC 2 cut(s) 209, 741
SinI GGWCC 1 cut(s) 434
SmiMI CAYNNNNRTG 4 cut(s) 18, 210, 462, 588
SpeI ACTAGT 1 cut(s) 122
SphI GCATGC 1 cut(s) 557
Sse9I AATT 5 cut(s) 130, 167, 666, 698, 703
SseBI AGGCCT 2 cut(s) 240, 727
SsiI CCGC 3 cut(s) 352, 444, 617
SspMI CTAG 3 cut(s) 123, 156, 717
StuI AGGCCT 2 cut(s) 240, 727
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 3 cut(s) 75, 255, 408
TaqI TCGA 1 cut(s) 231
TasI AATT 5 cut(s) 130, 167, 666, 698, 703
TfiI GAWTC 2 cut(s) 484, 738
Tru1I TTAA 3 cut(s) 39, 210, 462
Tru9I TTAA 3 cut(s) 39, 210, 462
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 1 cut(s) 764
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 4 cut(s) 36, 291, 413, 540
TspGWI ACGGA 4 cut(s) 281, 335, 530, 678
VneI GTGCAC 1 cut(s) 712
VpaK11BI GGWCC 1 cut(s) 434
XagI CCTNNNNNAGG 1 cut(s) 429
XapI RAATTY 3 cut(s) 130, 167, 698
XceI RCATGY 1 cut(s) 557
XspI CTAG 3 cut(s) 123, 156, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.