Rorug02G0354100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000520
Physical Location & Seq
Reverse (-)
44538811 .. 44547066
8256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0354100.1

Sequence Viewer

Length: 867 bp
ATGGTATCATCAAAACCAGGAAGCAGCTTTGGCCCCTCACATCATGACTCAGGAGTCAATAGTATTGAGAAACTCATCACCGATGATTCAGTGATCGAAGTCCCCCAAAACTATGTTATCTCAGATCAGGAGTCTCCGGTCTCTGATGGGACTATCCTTGCCACAATCCCCACCATTGACATGAGACAGTTGGTCCTAATCAATCAGTCTGAAAACAAAGATGAACTTGAAAAGTTGCACTCAACTTGCGAAGAATGGGGAATTTTTCAGTTGGTTAACCATGGAGTTAACTCTGCACTACTGGACAAAGTGAAGCAAGATTTAGAGGCATTTTTCAAGCTTCCCTTGGAAGAGAAAATGAGATACAAAGTAAGGCCAGGTGATGTTGAAGGGTATGGAACTGTTGTCAAATCCCAAGATCAAAAACTCGACTGGGGGCTAATTGGTGGCCTCAGGCCTCATTCTGATGGTAGTGGCATCACTATTCTCCACCAGGTTAATGGAGTTCAAGGCCTTCAAATTAAAAAAGATGGGGCTTGGTTCCCTGTGATCTTTGACCATGGTGCCTTTGTTGTCAATGTTGGAGACATTCTAGAGATTCTGAGTGATGGGCTTTATAAAAGTATTGAGCACAGAGTAATTGTGAACCCAGAGAAAGAAAGGATTTCAATTGCTATGTTCTTCATGCCCAAACTTGAGTCAGAAATTGGACCTGTGACCGCCCTGAGAGATCCTCAGAAGCCACCATCTCCTGGGAAAATAGGAATGGAAAAATTTGTCGAGAATTACTTCGCTCATAATCTTAATGGAAAAACACCCTTGGAGCGAATCAGAACAAAAGATGGTGAAGAGAATACTACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

31.95

Weight (kDa)

5.24

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 56 - 145 1.7e-25 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 144 - 230 1.4e-24 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AasI GACNNNNNNGTC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 563
AccB7I CCANNNNNTGG 1 cut(s) 752
AciI CCGC 1 cut(s) 720
AclWI GGATC 1 cut(s) 725
AcsI RAATTY 2 cut(s) 261, 773
AfiI CCNNNNNNNGG 1 cut(s) 752
AgsI TTSAA 6 cut(s) 230, 337, 389, 509, 518, 669
AhdI GACNNNNNGTC 1 cut(s) 191
AjnI CCWGG 4 cut(s) 16, 376, 492, 751
AluBI AGCT 2 cut(s) 27, 340
AluI AGCT 2 cut(s) 27, 340
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 4 cut(s) 138, 145, 178, 579
AlwI GGATC 1 cut(s) 725
AoxI GGCC 5 cut(s) 31, 374, 448, 455, 511
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 2 cut(s) 261, 773
Asp700I GAANNNNTTC 1 cut(s) 788
AspS9I GGNCC 3 cut(s) 32, 193, 710
AsuHPI GGTGA 3 cut(s) 70, 392, 857
AvaII GGWCC 2 cut(s) 193, 710
AxyI CCTNAGG 1 cut(s) 452
BanI GGYRCC 1 cut(s) 563
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 1 cut(s) 36
BccI CCATC 6 cut(s) 140, 461, 524, 602, 754, 836
BciT130I CCWGG 4 cut(s) 18, 378, 494, 753
BcoDI GTCTC 4 cut(s) 138, 145, 178, 579
BfaI CTAG 1 cut(s) 593
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 4 cut(s) 18, 378, 494, 753
Bme18I GGWCC 2 cut(s) 193, 710
BmeRI GACNNNNNGTC 1 cut(s) 191
BmgT120I GGNCC 3 cut(s) 32, 193, 710
BmiI GGNNCC 3 cut(s) 34, 542, 565
BmrFI CCNGG 4 cut(s) 18, 378, 494, 753
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 486
BmuI ACTGGG 1 cut(s) 442
BplI GAGNNNNNCTC 2 cut(s) 718, 750
BpuEI CTTGAG 1 cut(s) 716
BsaI GGTCTC 1 cut(s) 145
BsaJI CCNNGG 5 cut(s) 280, 345, 559, 752, 819
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 752
Bse1I ACTGG 2 cut(s) 306, 437
Bse21I CCTNAGG 1 cut(s) 452
BseBI CCWGG 4 cut(s) 18, 378, 494, 753
BseDI CCNNGG 5 cut(s) 280, 345, 559, 752, 819
BseLI CCNNNNNNNGG 1 cut(s) 752
BseMII CTCAG 6 cut(s) 63, 135, 466, 593, 716, 749
BseNI ACTGG 2 cut(s) 306, 437
BseXI GCAGC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 5 cut(s) 33, 376, 450, 457, 513
BshNI GGYRCC 1 cut(s) 563
BsiHKAI GWGCWC 1 cut(s) 633
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 2 cut(s) 86, 163
BslI CCNNNNNNNGG 1 cut(s) 752
BsmAI GTCTC 4 cut(s) 138, 145, 178, 579
BsmFI GGGAC 2 cut(s) 86, 163
BsnI GGCC 5 cut(s) 33, 376, 450, 457, 513
Bso31I GGTCTC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 5 cut(s) 93, 124, 418, 549, 730
Bsp19I CCATGG 2 cut(s) 280, 559
BspACI CCGC 1 cut(s) 720
BspANI GGCC 5 cut(s) 33, 376, 450, 457, 513
BspCNI CTCAG 6 cut(s) 62, 134, 465, 594, 717, 748
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 3 cut(s) 34, 542, 565
BspPI GGATC 1 cut(s) 725
BspT107I GGYRCC 1 cut(s) 563
BspTNI GGTCTC 1 cut(s) 145
BsrI ACTGG 2 cut(s) 306, 437
BssECI CCNNGG 5 cut(s) 280, 345, 559, 752, 819
BssMI GATC 5 cut(s) 93, 124, 418, 549, 730
BssT1I CCWWGG 4 cut(s) 280, 345, 559, 819
Bst2UI CCWGG 4 cut(s) 18, 378, 494, 753
Bst4CI ACNGT 2 cut(s) 189, 403
Bst6I CTCTTC 2 cut(s) 345, 843
BstDEI CTNAG 6 cut(s) 49, 121, 452, 602, 725, 735
BstDSI CCRYGG 2 cut(s) 280, 559
BstKTI GATC 5 cut(s) 96, 127, 421, 552, 733
BstMAI GTCTC 4 cut(s) 138, 145, 178, 579
BstMBI GATC 5 cut(s) 93, 124, 418, 549, 730
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNI CCWGG 4 cut(s) 18, 378, 494, 753
BstSCI CCNGG 4 cut(s) 16, 376, 492, 751
BstV1I GCAGC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 730
BstXI CCANNNNNNTGG 1 cut(s) 500
BstYI RGATCY 1 cut(s) 730
Bsu36I CCTNAGG 1 cut(s) 452
BsuRI GGCC 5 cut(s) 33, 376, 450, 457, 513
BtgI CCRYGG 2 cut(s) 280, 559
BtsIMutI CAGTG 1 cut(s) 96
CciI TCATGA 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 32, 193, 710
CsiI ACCWGGT 1 cut(s) 492
CviAII CATG 6 cut(s) 44, 181, 281, 560, 685, 864
DdeI CTNAG 6 cut(s) 49, 121, 452, 602, 725, 735
DpnI GATC 5 cut(s) 95, 126, 420, 551, 732
DpnII GATC 5 cut(s) 93, 124, 418, 549, 730
DrdI GACNNNNNNGTC 1 cut(s) 53
DriI GACNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 53
Eam1104I CTCTTC 2 cut(s) 345, 843
Eam1105I GACNNNNNGTC 1 cut(s) 191
EarI CTCTTC 2 cut(s) 345, 843
Eco130I CCWWGG 4 cut(s) 280, 345, 559, 819
Eco147I AGGCCT 2 cut(s) 457, 513
Eco31I GGTCTC 1 cut(s) 145
Eco47I GGWCC 2 cut(s) 193, 710
Eco81I CCTNAGG 1 cut(s) 452
EcoRII CCWGG 4 cut(s) 16, 376, 492, 751
EcoT14I CCWWGG 4 cut(s) 280, 345, 559, 819
ErhI CCWWGG 4 cut(s) 280, 345, 559, 819
FaeI CATG 6 cut(s) 47, 184, 284, 563, 688, 867
FalI AAGNNNNNCTT 4 cut(s) 210, 242, 329, 361
FaqI GGGAC 2 cut(s) 86, 163
FatI CATG 6 cut(s) 43, 180, 280, 559, 684, 863
Fnu4HI GCNGC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 1 cut(s) 593
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 5 cut(s) 33, 376, 450, 457, 513
HapII CCGG 1 cut(s) 137
Hin1II CATG 6 cut(s) 47, 184, 284, 563, 688, 867
HincII GTYRAC 2 cut(s) 277, 289
HindII GTYRAC 2 cut(s) 277, 289
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 7 cut(s) 47, 54, 86, 131, 598, 698, 828
HpaI GTTAAC 2 cut(s) 277, 289
HpaII CCGG 1 cut(s) 137
HphI GGTGA 3 cut(s) 70, 392, 857
Hpy166II GTNNAC 3 cut(s) 277, 289, 646
Hpy188I TCNGA 8 cut(s) 124, 145, 211, 466, 603, 703, 738, 833
Hpy188III TCNNGA 5 cut(s) 44, 51, 128, 593, 781
Hpy8I GTNNAC 3 cut(s) 277, 289, 646
HpyAV CCTTC 2 cut(s) 383, 524
HpyCH4III ACNGT 2 cut(s) 189, 403
HpyCH4V TGCA 3 cut(s) 238, 296, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 6 cut(s) 49, 121, 452, 602, 725, 735
Hsp92II CATG 6 cut(s) 47, 184, 284, 563, 688, 867
KspAI GTTAAC 2 cut(s) 277, 289
Kzo9I GATC 5 cut(s) 93, 124, 418, 549, 730
LmnI GCTCC 1 cut(s) 823
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 486
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 1 cut(s) 593
MaeIII GTNAC 1 cut(s) 715
MalI GATC 5 cut(s) 95, 126, 420, 551, 732
MboI GATC 5 cut(s) 93, 124, 418, 549, 730
MboII GAAGA 4 cut(s) 263, 362, 673, 860
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 1 cut(s) 633
MluCI AATT 8 cut(s) 261, 441, 519, 639, 669, 705, 773, 784
MlyI GAGTC 4 cut(s) 41, 63, 140, 707
MmeI TCCRAC 1 cut(s) 562
MnlI CCTC 5 cut(s) 46, 319, 461, 468, 744
MroXI GAANNNNTTC 1 cut(s) 788
MseI TTAA 5 cut(s) 276, 288, 498, 522, 804
MslI CAYNNNNRTG 2 cut(s) 179, 465
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 4 cut(s) 18, 378, 494, 753
MunI CAATTG 1 cut(s) 669
MvaI CCWGG 4 cut(s) 18, 378, 494, 753
MwoI GCNNNNNNNGC 1 cut(s) 30
NcoI CCATGG 2 cut(s) 280, 559
NdeII GATC 5 cut(s) 93, 124, 418, 549, 730
NlaIII CATG 6 cut(s) 47, 184, 284, 563, 688, 867
NlaIV GGNNCC 3 cut(s) 34, 542, 565
NmuCI GTSAC 1 cut(s) 715
PagI TCATGA 1 cut(s) 43
PceI AGGCCT 2 cut(s) 457, 513
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 3 cut(s) 86, 598, 828
PflMI CCANNNNNTGG 1 cut(s) 752
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 4 cut(s) 41, 62, 139, 706
PpsI GAGTC 4 cut(s) 41, 62, 139, 706
PsiI TTATAA 1 cut(s) 618
Psp6I CCWGG 4 cut(s) 16, 376, 492, 751
PspGI CCWGG 4 cut(s) 16, 376, 492, 751
PspN4I GGNNCC 3 cut(s) 34, 542, 565
PspPI GGNCC 3 cut(s) 32, 193, 710
PsuI RGATCY 1 cut(s) 730
RseI CAYNNNNRTG 2 cut(s) 179, 465
SaqAI TTAA 5 cut(s) 276, 288, 498, 522, 804
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 5 cut(s) 93, 124, 418, 549, 730
Sau96I GGNCC 3 cut(s) 32, 193, 710
SchI GAGTC 4 cut(s) 41, 63, 140, 707
ScrFI CCNGG 4 cut(s) 18, 378, 494, 753
SduI GDGCHC 1 cut(s) 633
SetI ASST 5 cut(s) 29, 342, 382, 498, 715
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 1 cut(s) 486
SinI GGWCC 2 cut(s) 193, 710
SmiMI CAYNNNNRTG 2 cut(s) 179, 465
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 8 cut(s) 261, 441, 519, 639, 669, 705, 773, 784
SseBI AGGCCT 2 cut(s) 457, 513
SsiI CCGC 1 cut(s) 720
SspMI CTAG 1 cut(s) 593
StuI AGGCCT 2 cut(s) 457, 513
StyD4I CCNGG 4 cut(s) 16, 376, 492, 751
StyI CCWWGG 4 cut(s) 280, 345, 559, 819
TaaI ACNGT 2 cut(s) 189, 403
TaqI TCGA 3 cut(s) 96, 429, 780
TasI AATT 8 cut(s) 261, 441, 519, 639, 669, 705, 773, 784
TfiI GAWTC 3 cut(s) 86, 598, 828
Tru1I TTAA 5 cut(s) 276, 288, 498, 522, 804
Tru9I TTAA 5 cut(s) 276, 288, 498, 522, 804
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 2 cut(s) 237, 673
TspRI CASTG 1 cut(s) 96
Van91I CCANNNNNTGG 1 cut(s) 752
VpaK11BI GGWCC 2 cut(s) 193, 710
XapI RAATTY 2 cut(s) 261, 773
XbaI TCTAGA 1 cut(s) 592
XcmI CCANNNNNNNNNTGG 1 cut(s) 497
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.