Rroxscaffold_2G00105890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000520
Physical Location & Seq
Forward (+)
29360099 .. 29362673
2575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105890.1

Sequence Viewer

Length: 429 bp
ATGGAAACCTACCACATGAGACCAGCAGTGGGCAAGGAGAAGGAGAAATTAACCCTAGATTTGGATATTTCTGGAATCACAGCAGTGGGCAAGGAGAAGGAGAAGCTTGAAAAAGACGTACAGGCAGCCGCCGGAGTCATGAAAAGAGAAGGATGTCAGATTTGCGGTGATGACCACCAACACATTATTCGTTGCCCGTACTTGGAGTTTGTTCCCCCTGGCGGAACTGTTGGCCCTGACTATCTAGTAGTATGTGGCGAATGTGGTTATGAGTTAAAGCAGCCTATTCCGGCTTGTTGTTGGTCGTGCGGTTATTGGGGAGGACGTGCGGTGGAGGCGTCTACCTTTGATTATAGCTTTCGTTACTACCTAGATGAATTTTATATAGAAGAACCAGTTACGGCAGAGTACATGGACCCAGACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.98

Weight (kDa)

4.63

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 341
AciI CCGC 5 cut(s) 129, 165, 222, 309, 329
AcsI RAATTY 1 cut(s) 377
AcyI GRCGYC 1 cut(s) 338
AfaI GTAC 3 cut(s) 120, 200, 410
AfiI CCNNNNNNNGG 4 cut(s) 29, 61, 202, 221
AgsI TTSAA 1 cut(s) 110
AjiI CACGTC 1 cut(s) 326
AjnI CCWGG 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AleI CACNNNNGTG 1 cut(s) 83
AluBI AGCT 2 cut(s) 106, 357
AluI AGCT 2 cut(s) 106, 357
Alw26I GTCTC 1 cut(s) 13
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 125, 280
ApoI RAATTY 1 cut(s) 377
AspS9I GGNCC 2 cut(s) 233, 415
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 1 cut(s) 415
BbvI GCAGC 2 cut(s) 137, 292
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 3 cut(s) 56, 245, 371
BisI GCNGC 3 cut(s) 126, 129, 281
BlsI GCNGC 3 cut(s) 127, 130, 282
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 415
BmgBI CACGTC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 233, 415
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 338
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 61, 202, 221
Bse1I ACTGG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 4 cut(s) 29, 61, 202, 221
BseNI ACTGG 1 cut(s) 395
BseXI GCAGC 2 cut(s) 137, 292
BshFI GGCC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 132, 290
BslI CCNNNNNNNGG 4 cut(s) 29, 61, 202, 221
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 1 cut(s) 234
Bso31I GGTCTC 1 cut(s) 13
BspACI CCGC 5 cut(s) 129, 165, 222, 309, 329
BspANI GGCC 1 cut(s) 234
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 417
BspTNI GGTCTC 1 cut(s) 13
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 338
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 229
BstACI GRCGYC 1 cut(s) 338
BstF5I GGATG 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 137, 292
BsuRI GGCC 1 cut(s) 234
BtrI CACGTC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 158
BtsI GCAGTG 2 cut(s) 33, 90
BtsIMutI CAGTG 2 cut(s) 33, 90
CciI TCATGA 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 233, 415
CseI GACGC 1 cut(s) 327
Csp6I GTAC 3 cut(s) 119, 199, 409
CviAII CATG 3 cut(s) 16, 139, 412
CviJI RGCY 6 cut(s) 106, 128, 234, 283, 293, 357
CviKI_1 RGCY 6 cut(s) 106, 128, 234, 283, 293, 357
CviQI GTAC 3 cut(s) 119, 199, 409
EciI GGCGGA 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 217
FaeI CATG 3 cut(s) 19, 142, 415
FaiI YATR 8 cut(s) 17, 140, 253, 270, 354, 384, 386, 413
FatI CATG 3 cut(s) 15, 138, 411
FblI GTMKAC 1 cut(s) 341
Fnu4HI GCNGC 3 cut(s) 126, 129, 281
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 126, 129, 281
FspBI CTAG 3 cut(s) 56, 245, 371
GluI GCNGC 3 cut(s) 126, 129, 281
HaeIII GGCC 1 cut(s) 234
HapII CCGG 2 cut(s) 132, 290
HgaI GACGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 3 cut(s) 19, 142, 415
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 2 cut(s) 75, 135
HpaII CCGG 2 cut(s) 132, 290
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 2 cut(s) 72, 139
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 3 cut(s) 34, 91, 143
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 2 cut(s) 117, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpySE526I ACGT 2 cut(s) 117, 325
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 3 cut(s) 19, 142, 415
LpnPI CCDG 9 cut(s) 36, 57, 107, 145, 204, 231, 249, 303, 408
Lsp1109I GCAGC 2 cut(s) 137, 292
MaeI CTAG 3 cut(s) 56, 245, 371
MaeII ACGT 2 cut(s) 117, 325
MaeIII GTNAC 2 cut(s) 362, 397
MboII GAAGA 1 cut(s) 401
MluCI AATT 2 cut(s) 47, 377
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 2 cut(s) 314, 328
MseI TTAA 2 cut(s) 50, 275
MslI CAYNNNNRTG 1 cut(s) 83
MspI CCGG 2 cut(s) 132, 290
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 335
NlaIII CATG 3 cut(s) 19, 142, 415
NlaIV GGNNCC 1 cut(s) 417
OliI CACNNNNGTG 1 cut(s) 83
PagI TCATGA 1 cut(s) 138
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 3 cut(s) 127, 130, 282
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 2 cut(s) 233, 415
RsaI GTAC 3 cut(s) 120, 200, 410
RsaNI GTAC 3 cut(s) 119, 199, 409
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 2 cut(s) 50, 275
SatI GCNGC 3 cut(s) 126, 129, 281
Sau96I GGNCC 2 cut(s) 233, 415
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 219
SetI ASST 7 cut(s) 11, 108, 120, 328, 347, 359, 372
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 2 cut(s) 47, 377
SsiI CCGC 5 cut(s) 129, 165, 222, 309, 329
SspMI CTAG 3 cut(s) 56, 245, 371
StyD4I CCNGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 2 cut(s) 120, 328
TasI AATT 2 cut(s) 47, 377
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 50, 275
Tru9I TTAA 2 cut(s) 50, 275
TscAI CASTG 2 cut(s) 33, 90
TseI GCWGC 2 cut(s) 125, 280
TspDTI ATGAA 2 cut(s) 155, 390
TspRI CASTG 2 cut(s) 33, 90
VpaK11BI GGWCC 1 cut(s) 415
XapI RAATTY 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 341
XspI CTAG 3 cut(s) 56, 245, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.