RLG00000019781

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000520
Physical Location & Seq
Reverse (-)
56654818 .. 56655383
566 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019781

Sequence Viewer

Length: 369 bp
ATGGACAGCAATTTCTCAGGGGCGATTGCAAAATTGAGAGGAGTGTCGGACGATGAGATCTCGATGGGGCAGCGCGGGGATTTGATGAAGCCCAATAGCTTCGAGGCTGCTTCTTCTACTTCTGTCGTCACCAAAAGAGGAGGATGTCAGATCTGCGGTCATGATCACCAGCACATTCGTTGCCCATACTTGGAGTTGGTTCCACCTGGCGGAACTGTTGGCCCTGACTATCTAGTAGTATGCGGCGAATGTGGTTATGAGTTAAAGCAGCCTATTCCGGCTTTTTGTTGGTCATGCGGTTATTGCCTTATTGGGGAGGACGTGCGGTGGAGGCGTCTACCTTTGATTATAGCTTTCATTACTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.31

Weight (kDa)

5.85

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 337
AccII CGCG 1 cut(s) 75
AciI CCGC 6 cut(s) 75, 156, 210, 243, 297, 325
AcyI GRCGYC 1 cut(s) 334
AfiI CCNNNNNNNGG 3 cut(s) 190, 209, 313
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 2 cut(s) 99, 353
AluI AGCT 2 cut(s) 99, 353
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 3 cut(s) 70, 107, 268
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 121, 158
BbvI GCAGC 3 cut(s) 82, 94, 280
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 207
BclI TGATCA 1 cut(s) 163
BfaI CTAG 2 cut(s) 233, 367
BglII AGATCT 2 cut(s) 57, 150
BisI GCNGC 4 cut(s) 71, 108, 244, 269
BlsI GCNGC 4 cut(s) 72, 109, 245, 270
Bme1390I CCNGG 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 334
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 209, 313
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 3 cut(s) 190, 209, 313
BseMII CTCAG 1 cut(s) 30
BseRI GAGGAG 2 cut(s) 54, 153
BseXI GCAGC 3 cut(s) 82, 94, 280
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 278
BslI CCNNNNNNNGG 3 cut(s) 190, 209, 313
BsnI GGCC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 57, 150, 163
BspACI CCGC 6 cut(s) 75, 156, 210, 243, 297, 325
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 29
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 201
BssMI GATC 3 cut(s) 57, 150, 163
BssNI GRCGYC 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 334
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 3 cut(s) 60, 153, 166
BstMBI GATC 3 cut(s) 57, 150, 163
BstMWI GCNNNNNNNGC 2 cut(s) 303, 331
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 3 cut(s) 82, 94, 280
BstX2I RGATCY 2 cut(s) 57, 150
BstYI RGATCY 2 cut(s) 57, 150
BsuRI GGCC 1 cut(s) 222
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 149
CciI TCATGA 1 cut(s) 160
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 1 cut(s) 323
CviAII CATG 2 cut(s) 161, 294
CviJI RGCY 7 cut(s) 91, 99, 107, 222, 271, 281, 353
CviKI_1 RGCY 7 cut(s) 91, 99, 107, 222, 271, 281, 353
DdeI CTNAG 1 cut(s) 16
DpnI GATC 3 cut(s) 59, 152, 165
DpnII GATC 3 cut(s) 57, 150, 163
EciI GGCGGA 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 2 cut(s) 164, 297
FaiI YATR 6 cut(s) 162, 187, 241, 258, 295, 350
FatI CATG 2 cut(s) 160, 293
FauI CCCGC 1 cut(s) 68
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 1 cut(s) 337
Fnu4HI GCNGC 4 cut(s) 71, 108, 244, 269
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 4 cut(s) 71, 108, 244, 269
FspBI CTAG 2 cut(s) 233, 367
GlaI GCGC 1 cut(s) 74
GluI GCNGC 4 cut(s) 71, 108, 244, 269
HaeIII GGCC 1 cut(s) 222
HapII CCGG 1 cut(s) 278
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 334
Hin1II CATG 2 cut(s) 164, 297
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HpaII CCGG 1 cut(s) 278
HphI GGTGA 2 cut(s) 121, 158
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 2 cut(s) 49, 150
Hpy188III TCNNGA 2 cut(s) 61, 161
Hpy8I GTNNAC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 331
HpyF3I CTNAG 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 334
Hsp92II CATG 2 cut(s) 164, 297
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 3 cut(s) 57, 150, 163
LpnPI CCDG 6 cut(s) 3, 182, 192, 219, 237, 291
Lsp1109I GCAGC 3 cut(s) 82, 94, 280
MaeI CTAG 2 cut(s) 233, 367
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 127
MalI GATC 3 cut(s) 59, 152, 165
MboI GATC 3 cut(s) 57, 150, 163
MboII GAAGA 1 cut(s) 105
MflI RGATCY 2 cut(s) 57, 150
MluCI AATT 2 cut(s) 10, 32
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 6 cut(s) 32, 97, 131, 134, 310, 324
MseI TTAA 1 cut(s) 263
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 303, 331
NdeII GATC 3 cut(s) 57, 150, 163
NlaIII CATG 2 cut(s) 164, 297
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 127
PagI TCATGA 1 cut(s) 160
PkrI GCNGC 4 cut(s) 72, 109, 245, 270
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 2 cut(s) 57, 150
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 4 cut(s) 71, 108, 244, 269
Sau3AI GATC 3 cut(s) 57, 150, 163
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 207
SetI ASST 6 cut(s) 101, 208, 324, 343, 355, 368
Sse9I AATT 2 cut(s) 10, 32
SsiI CCGC 6 cut(s) 75, 156, 210, 243, 297, 325
SspMI CTAG 2 cut(s) 233, 367
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 324
TaqI TCGA 2 cut(s) 62, 102
TasI AATT 2 cut(s) 10, 32
TauI GCSGC 1 cut(s) 246
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 70, 107, 268
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 101, 346
XmiI GTMKAC 1 cut(s) 337
XspI CTAG 2 cut(s) 233, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.