MD06G1150500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000520
Physical Location & Seq
Forward (+)
29344462 .. 29347069
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1150500.v1.1.491

Sequence Viewer

Length: 552 bp
ATGAAACGCCGATTCGAAGGCGGACTAGGAGAATCTGCGGAGGGGGAGAATCCAATTCCGGCCCAACCCACAAAGCTCCGAGATGCAGATAAGAATAAAGAAAAAATTTCTGTTAAAGATTCTCCGACGACTCATCTCACAAAAGTAGAGGCTGCTCAGGACTCTCAGACTCAACTCCAGCTCGAGGAGAAGAATACTCTTCCAGCTATTCTCGAGGACAATAATCCCACATGCCTAGCCCGTCCTAAACTCATAATCAAGCCAGGCACATTTTCCTCTATGCCGTCTACTTGTCGAATTTGCTCTGAGTATGGACACTTTCCTGGTATGTTCCCCTGGAGGAAACGGCTCCCAAAAGGCGTAACTCAGGTTGGCAAGGGCTATGTAGTAAAGTGGGGGCGTGCTGTTCGCCTTGAGTGTGTTTATTGTTATGAGATTGGTACCCACATGCTTAATGACTGCCCGCATTTTAAAAAACTACTTGACGAAAATGGAGGGGATGCGCCGTTGCACCCCTGTTTGCTCGATGATACACCACTTGGTGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.36

Weight (kDa)

7.56

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 440
AccB1I GGYRCC 1 cut(s) 440
AccI GTMKAC 1 cut(s) 287
AciI CCGC 3 cut(s) 21, 38, 464
AcsI RAATTY 2 cut(s) 105, 297
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 1 cut(s) 184
AjnI CCWGG 3 cut(s) 262, 322, 335
AluBI AGCT 3 cut(s) 76, 181, 206
AluI AGCT 3 cut(s) 76, 181, 206
Ama87I CYCGRG 2 cut(s) 182, 212
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 105, 297
Asp718I GGTACC 1 cut(s) 440
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 1 cut(s) 61
AsuII TTCGAA 1 cut(s) 15
AvaI CYCGRG 2 cut(s) 182, 212
BanI GGYRCC 1 cut(s) 440
BbvI GCAGC 1 cut(s) 139
BceAI ACGGC 3 cut(s) 268, 362, 490
BciT130I CCWGG 3 cut(s) 264, 324, 337
BfaI CTAG 2 cut(s) 26, 236
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 3 cut(s) 264, 324, 337
BmeT110I CYCGRG 2 cut(s) 182, 212
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 2 cut(s) 350, 442
BmrFI CCNGG 3 cut(s) 264, 324, 337
BmsI GCATC 2 cut(s) 73, 490
BpmI CTGGAG 2 cut(s) 161, 358
Bpu10I CCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 184
BseBI CCWGG 3 cut(s) 264, 324, 337
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 4 cut(s) 170, 179, 297, 380
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 440
BsiHKCI CYCGRG 2 cut(s) 182, 212
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 184
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 2 cut(s) 182, 212
Bsp119I TTCGAA 1 cut(s) 15
BspACI CCGC 3 cut(s) 21, 38, 464
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 4 cut(s) 169, 178, 298, 379
BspLI GGNNCC 2 cut(s) 350, 442
BspT104I TTCGAA 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 440
BssECI CCNNGG 1 cut(s) 335
Bst2UI CCWGG 3 cut(s) 264, 324, 337
Bst6I CTCTTC 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 402, 464
BstDEI CTNAG 4 cut(s) 156, 165, 306, 366
BstF5I GGATG 1 cut(s) 505
BstHHI GCGC 1 cut(s) 505
BstNI CCWGG 3 cut(s) 264, 324, 337
BstNSI RCATGY 2 cut(s) 234, 451
BstSCI CCNGG 3 cut(s) 262, 322, 335
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 402, 464
CfoI GCGC 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 441
CviAII CATG 2 cut(s) 231, 448
CviJI RGCY 9 cut(s) 62, 76, 152, 181, 206, 239, 262, 349, 381
CviKI_1 RGCY 9 cut(s) 62, 76, 152, 181, 206, 239, 262, 349, 381
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 4 cut(s) 156, 165, 306, 366
DraI TTTAAA 1 cut(s) 472
DraIII CACNNNGTG 1 cut(s) 542
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EciI GGCGGA 1 cut(s) 36
Eco88I CYCGRG 2 cut(s) 182, 212
EcoRII CCWGG 3 cut(s) 262, 322, 335
FaeI CATG 2 cut(s) 234, 451
FaiI YATR 8 cut(s) 232, 254, 281, 312, 329, 384, 432, 449
FatI CATG 2 cut(s) 230, 447
FauI CCCGC 1 cut(s) 471
FblI GTMKAC 1 cut(s) 287
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 2 cut(s) 26, 236
GlaI GCGC 1 cut(s) 504
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 2 cut(s) 161, 358
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 59
HhaI GCGC 1 cut(s) 505
Hin1II CATG 2 cut(s) 234, 451
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 7 cut(s) 12, 32, 49, 119, 130, 161, 169
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 4 cut(s) 80, 126, 168, 307
Hpy188III TCNNGA 2 cut(s) 158, 212
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 86, 511
HpyF3I CTNAG 4 cut(s) 156, 165, 306, 366
Hsp92II CATG 2 cut(s) 234, 451
HspAI GCGC 1 cut(s) 503
KpnI GGTACC 1 cut(s) 444
LmnI GCTCC 2 cut(s) 81, 354
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 73, 490
MaeI CTAG 2 cut(s) 26, 236
MaeIII GTNAC 1 cut(s) 361
MboII GAAGA 2 cut(s) 191, 202
MluCI AATT 3 cut(s) 54, 105, 297
MlyI GAGTC 3 cut(s) 124, 155, 163
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 7 cut(s) 34, 142, 178, 208, 286, 333, 488
MseI TTAA 3 cut(s) 114, 453, 471
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 3 cut(s) 264, 324, 337
MvaI CCWGG 3 cut(s) 264, 324, 337
NlaIII CATG 2 cut(s) 234, 451
NlaIV GGNNCC 2 cut(s) 350, 442
NspI RCATGY 2 cut(s) 234, 451
NspV TTCGAA 1 cut(s) 15
PaeR7I CTCGAG 2 cut(s) 182, 212
PfeI GAWTC 4 cut(s) 12, 32, 49, 119
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 3 cut(s) 124, 155, 163
PpsI GAGTC 3 cut(s) 124, 155, 163
Psp6I CCWGG 3 cut(s) 262, 322, 335
PspGI CCWGG 3 cut(s) 262, 322, 335
PspN4I GGNNCC 2 cut(s) 350, 442
PspPI GGNCC 1 cut(s) 61
PspXI VCTCGAGB 1 cut(s) 182
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
SaqAI TTAA 3 cut(s) 114, 453, 471
SatI GCNGC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 3 cut(s) 124, 155, 163
ScrFI CCNGG 3 cut(s) 264, 324, 337
SetI ASST 4 cut(s) 78, 183, 208, 372
SfaNI GCATC 2 cut(s) 73, 490
Sfr274I CTCGAG 2 cut(s) 182, 212
SfuI TTCGAA 1 cut(s) 15
SlaI CTCGAG 2 cut(s) 182, 212
SmlI CTYRAG 3 cut(s) 182, 212, 413
SmoI CTYRAG 3 cut(s) 182, 212, 413
Sse9I AATT 3 cut(s) 54, 105, 297
SsiI CCGC 3 cut(s) 21, 38, 464
SspMI CTAG 2 cut(s) 26, 236
StyD4I CCNGG 3 cut(s) 262, 322, 335
TaqI TCGA 5 cut(s) 15, 183, 213, 295, 525
TasI AATT 3 cut(s) 54, 105, 297
TfiI GAWTC 4 cut(s) 12, 32, 49, 119
Tru1I TTAA 3 cut(s) 114, 453, 471
Tru9I TTAA 3 cut(s) 114, 453, 471
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 105, 297
XceI RCATGY 2 cut(s) 234, 451
XhoI CTCGAG 2 cut(s) 182, 212
XmiI GTMKAC 1 cut(s) 287
XspI CTAG 2 cut(s) 26, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.