pycom07g01500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000520
Physical Location & Seq
Forward (+)
1129433 .. 1131659
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01500.1

Sequence Viewer

Length: 720 bp
ATGCACGTAGCCCCCCGCCAAAATCGGAAAATCCTCAAACTTAATTCATGCAATCTCTCTCTTTTCGTCCCAATAAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGACAAAACCATGAGCCGCCGAGTAGCCGGACCAGGATCAGAATCCGGAAGCCCCAAATTCGCTCGCCTCTCTCGTTCTCTCTCAATCAAAACCATGGAGGACCGCCGACTCGAAGTCACCAGGTCCAATTTCAAGTCCCTCGCCGGACCGAAGAAACTCCGAGATATGAAGAAAACGGCTGTTAAAGACTCTCCAACTCAACTCAAAAATGAAAATGTTGTTCAAGAGGGTATGGCTCAACTCCAACTTAACGAGGAGAATACTACTACACCAAAACCAGAAGAGAGGAAAATGCACAGAGCAGTCGTATTTACTAGACCTTTCAAATTCACAATCCCTTGTAAAGTTTGCGGAGTGGTTGGCCACTTGAATGATGATTGCCCCTACATGATACGTGTTCCAAACAATGTAACTGAGGTTGGCAAGGGCTATGAAATAGTTACCTTCCGTGGTAAGAGGCATGCTGAAAGTATGGTATGTGGTTATTGTCATATCGGTGCTGACCATCAGAACGATGACTGCCCGCATAAGAGCAAAATCATTGCACGAAGAAACTCCCTTCGGAAGGCCCCTCCTGTAGGTCCTCTCACCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

26.67

Weight (kDa)

10.0

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 167
AciI CCGC 5 cut(s) 16, 139, 226, 474, 647
AclWI GGATC 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 2 cut(s) 179, 449
AfiI CCNNNNNNNGG 2 cut(s) 688, 701
AflIII ACRYGT 1 cut(s) 517
AgsI TTSAA 4 cut(s) 256, 347, 448, 493
AhdI GACNNNNNGTC 1 cut(s) 236
AjnI CCWGG 2 cut(s) 154, 242
AlwI GGATC 1 cut(s) 166
Aor13HI TCCGGA 1 cut(s) 167
AoxI GGCC 2 cut(s) 484, 690
ApoI RAATTY 2 cut(s) 179, 449
AspS9I GGNCC 6 cut(s) 152, 223, 246, 269, 691, 704
AsuHPI GGTGA 2 cut(s) 232, 703
AvaII GGWCC 5 cut(s) 152, 223, 246, 269, 704
BalI TGGCCA 1 cut(s) 486
BccI CCATC 1 cut(s) 636
BceAI ACGGC 1 cut(s) 315
BciT130I CCWGG 2 cut(s) 156, 244
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 699
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
Bme1390I CCNGG 2 cut(s) 156, 244
Bme18I GGWCC 5 cut(s) 152, 223, 246, 269, 704
BmeRI GACNNNNNGTC 1 cut(s) 236
BmgT120I GGNCC 6 cut(s) 152, 223, 246, 269, 691, 704
BmiI GGNNCC 1 cut(s) 693
BmrFI CCNGG 2 cut(s) 156, 244
BsaAI YACGTR 2 cut(s) 7, 518
BsaBI GATNNNNATC 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 216, 571
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 2 cut(s) 688, 701
Bse3DI GCAATG 1 cut(s) 663
Bse8I GATNNNNATC 1 cut(s) 163
BseAI TCCGGA 1 cut(s) 167
BseBI CCWGG 2 cut(s) 156, 244
BseDI CCNNGG 2 cut(s) 216, 571
BseJI GATNNNNATC 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 688, 701
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 2 cut(s) 135, 528
BseRI GAGGAG 1 cut(s) 392
BshFI GGCC 2 cut(s) 486, 692
BsiSI CCGG 3 cut(s) 150, 168, 267
BslFI GGGAC 2 cut(s) 53, 244
BslI CCNNNNNNNGG 2 cut(s) 688, 701
BsmFI GGGAC 2 cut(s) 53, 244
BsnI GGCC 2 cut(s) 486, 692
Bsp13I TCCGGA 1 cut(s) 167
Bsp143I GATC 1 cut(s) 158
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 5 cut(s) 16, 139, 226, 474, 647
BspANI GGCC 2 cut(s) 486, 692
BspCNI CTCAG 2 cut(s) 134, 529
BspEI TCCGGA 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 693
BspPI GGATC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 663
BssECI CCNNGG 2 cut(s) 216, 571
BssMI GATC 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 156, 244
Bst6I CTCTTC 1 cut(s) 399
BstBAI YACGTR 2 cut(s) 7, 518
BstC8I GCNNGC 3 cut(s) 187, 585, 647
BstDEI CTNAG 2 cut(s) 121, 537
BstDSI CCRYGG 2 cut(s) 216, 571
BstENI CCTNNNNNAGG 2 cut(s) 686, 699
BstKTI GATC 1 cut(s) 161
BstMBI GATC 1 cut(s) 158
BstNI CCWGG 2 cut(s) 156, 244
BstNSI RCATGY 1 cut(s) 587
BstSCI CCNGG 2 cut(s) 154, 242
BstSFI CTRYAG 1 cut(s) 699
BsuRI GGCC 2 cut(s) 486, 692
BtgI CCRYGG 2 cut(s) 216, 571
Cac8I GCNNGC 3 cut(s) 187, 585, 647
Cfr13I GGNCC 6 cut(s) 152, 223, 246, 269, 691, 704
CpoI CGGWCCG 1 cut(s) 269
CsiI ACCWGGT 1 cut(s) 242
CspI CGGWCCG 1 cut(s) 269
CviAII CATG 5 cut(s) 48, 133, 217, 511, 584
CviJI RGCY 9 cut(s) 11, 138, 149, 174, 302, 359, 486, 552, 692
CviKI_1 RGCY 9 cut(s) 11, 138, 149, 174, 302, 359, 486, 552, 692
DdeI CTNAG 2 cut(s) 121, 537
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
DriI GACNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 1 cut(s) 399
Eam1105I GACNNNNNGTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 216
Eco47I GGWCC 5 cut(s) 152, 223, 246, 269, 704
EcoNI CCTNNNNNAGG 2 cut(s) 686, 699
EcoO109I RGGNCCY 2 cut(s) 691, 704
EcoRII CCWGG 2 cut(s) 154, 242
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 5 cut(s) 51, 136, 220, 514, 587
FaqI GGGAC 2 cut(s) 53, 244
FatI CATG 5 cut(s) 47, 132, 216, 510, 583
FauI CCCGC 2 cut(s) 23, 654
Fnu4HI GCNGC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 1 cut(s) 438
GluI GCNGC 1 cut(s) 139
HaeIII GGCC 2 cut(s) 486, 692
HapII CCGG 3 cut(s) 150, 168, 267
Hin1II CATG 5 cut(s) 51, 136, 220, 514, 587
HinfI GANTC 3 cut(s) 164, 231, 311
HpaII CCGG 3 cut(s) 150, 168, 267
HphI GGTGA 2 cut(s) 232, 703
Hpy188I TCNGA 6 cut(s) 27, 124, 163, 284, 633, 687
Hpy188III TCNNGA 3 cut(s) 168, 347, 717
HpyAV CCTTC 3 cut(s) 577, 682, 692
HpyCH4IV ACGT 2 cut(s) 6, 517
HpyCH4V TGCA 4 cut(s) 4, 51, 418, 668
HpyF3I CTNAG 2 cut(s) 121, 537
HpySE526I ACGT 2 cut(s) 6, 517
Hsp92II CATG 5 cut(s) 51, 136, 220, 514, 587
Kpn2I TCCGGA 1 cut(s) 167
Kzo9I GATC 1 cut(s) 158
LpnPI CCDG 9 cut(s) 141, 163, 168, 181, 229, 256, 280, 414, 711
MabI ACCWGGT 1 cut(s) 242
MaeI CTAG 1 cut(s) 438
MaeII ACGT 2 cut(s) 6, 517
MaeIII GTNAC 3 cut(s) 238, 532, 562
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 4 cut(s) 286, 304, 416, 684
MlsI TGGCCA 1 cut(s) 486
MluCI AATT 4 cut(s) 43, 179, 250, 449
MluNI TGGCCA 1 cut(s) 486
MlyI GAGTC 2 cut(s) 225, 305
MmeI TCCRAC 2 cut(s) 341, 391
Mox20I TGGCCA 1 cut(s) 486
MroI TCCGGA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 486
MseI TTAA 3 cut(s) 42, 306, 372
MslI CAYNNNNRTG 2 cut(s) 492, 618
Msp20I TGGCCA 1 cut(s) 486
MspI CCGG 3 cut(s) 150, 168, 267
MspR9I CCNGG 2 cut(s) 156, 244
MvaI CCWGG 2 cut(s) 156, 244
NcoI CCATGG 1 cut(s) 216
NdeII GATC 1 cut(s) 158
NlaIII CATG 5 cut(s) 51, 136, 220, 514, 587
NlaIV GGNNCC 1 cut(s) 693
NmeAIII GCCGAG 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 238
NspI RCATGY 1 cut(s) 587
PaeI GCATGC 1 cut(s) 587
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 140
PleI GAGTC 2 cut(s) 225, 305
PpsI GAGTC 2 cut(s) 225, 305
Ppu21I YACGTR 2 cut(s) 7, 518
PpuMI RGGWCCY 1 cut(s) 704
Psp5II RGGWCCY 1 cut(s) 704
Psp6I CCWGG 2 cut(s) 154, 242
PspGI CCWGG 2 cut(s) 154, 242
PspN4I GGNNCC 1 cut(s) 693
PspPI GGNCC 6 cut(s) 152, 223, 246, 269, 691, 704
PspPPI RGGWCCY 1 cut(s) 704
RseI CAYNNNNRTG 2 cut(s) 492, 618
Rsr2I CGGWCCG 1 cut(s) 269
RsrII CGGWCCG 1 cut(s) 269
SaqAI TTAA 3 cut(s) 42, 306, 372
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 1 cut(s) 158
Sau96I GGNCC 6 cut(s) 152, 223, 246, 269, 691, 704
SchI GAGTC 2 cut(s) 225, 305
ScrFI CCNGG 2 cut(s) 156, 244
SetI ASST 8 cut(s) 9, 248, 445, 520, 543, 569, 706, 716
SexAI ACCWGGT 1 cut(s) 242
SfcI CTRYAG 1 cut(s) 699
SinI GGWCC 5 cut(s) 152, 223, 246, 269, 704
SmiMI CAYNNNNRTG 2 cut(s) 492, 618
SphI GCATGC 1 cut(s) 587
Sse9I AATT 4 cut(s) 43, 179, 250, 449
SsiI CCGC 5 cut(s) 16, 139, 226, 474, 647
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 154, 242
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 2 cut(s) 9, 520
TaqI TCGA 1 cut(s) 234
TaqII GACCGA 1 cut(s) 286
TasI AATT 4 cut(s) 43, 179, 250, 449
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 3 cut(s) 42, 306, 372
Tru9I TTAA 3 cut(s) 42, 306, 372
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 4 cut(s) 36, 305, 348, 570
TspGWI ACGGA 1 cut(s) 560
VpaK11BI GGWCC 5 cut(s) 152, 223, 246, 269, 704
XagI CCTNNNNNAGG 2 cut(s) 686, 699
XapI RAATTY 2 cut(s) 179, 449
XceI RCATGY 1 cut(s) 587
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.