RchiOBHm_Chr2g0139011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000520
Physical Location & Seq
Forward (+)
56636920 .. 56639542
2623 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50960

Sequence Viewer

Length: 723 bp
ATGGACAGCAATTTCTCAGGGGCGATTGCAAAATTGAGAGGAGCGTCGGACGATGAGATCTCGATGGGGCAGCGCGGCGATTTGATGAAGCTCAATAGCTCCGAGGAGCCAGATCGCCTCGGGAAAAAACCCGGCAAGGACATTCCACACCCCGCAAAACCAGACATCAGTGCTGCTGCAGCCAGTATCAACCCTAAATTAGCCGCCCTTTCTCTGGGAAACCGAGGGAAACGGTTGTGCTCTGGACCTAAAGGTCGTATTTCTCAAAGGCGCAATCGAAAAGAAAAGGGAGCGTCCATTGGTCTAGGCATCAAGTCCAAAGAACCAAAGGCTATTGGAGTATCAGACAAAAACAATAAAAAAGTGGCTGCAGTTGCTTCTTCTACTTCTGTCGTCACCGAAAGAGGAGGATGTCAGATCTGCGGTCATGATCACCAGCACATCCGTTGCCCATACTTGGAGGTGGTTCCACCTGGCGGAACTGTTGGCCCTGACTATCTAGTAGTATGTGGCGAATGTGGTTATGAGTTAAAGCAGCCTATTCCGGCTTCTTGTTGGTCGTGCGGTTATTTTGGAGGACGTGTGGTGGGGGCGTCTACCTTTGATTATAGCTTTCGTTACCACCTAGATGAATATTATATAGAAGTACCAGTTACGGCAGAGTACATGGACCCAGGCAATTACACAGATCAAAAACCTGTAATGGCAGAGTCCTTATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

25.82

Weight (kDa)

8.7

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 596
AccII CGCG 1 cut(s) 75
AciI CCGC 6 cut(s) 75, 153, 204, 423, 477, 564
AcyI GRCGYC 1 cut(s) 593
AfaI GTAC 2 cut(s) 648, 665
AfiI CCNNNNNNNGG 3 cut(s) 214, 457, 476
AflIII ACRYGT 1 cut(s) 580
AjiI CACGTC 1 cut(s) 581
AjnI CCWGG 2 cut(s) 472, 673
AluBI AGCT 3 cut(s) 91, 99, 612
AluI AGCT 3 cut(s) 91, 99, 612
Alw21I GWGCWC 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 6 cut(s) 70, 173, 176, 179, 368, 535
AspLEI GCGC 2 cut(s) 75, 273
AspS9I GGNCC 3 cut(s) 245, 488, 670
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 388, 425
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 2 cut(s) 245, 670
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 6 cut(s) 82, 160, 163, 191, 355, 547
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 2 cut(s) 474, 675
BclI TGATCA 1 cut(s) 430
BcnI CCSGG 1 cut(s) 132
BfaI CTAG 3 cut(s) 305, 500, 626
BfmI CTRYAG 2 cut(s) 177, 369
BglII AGATCT 2 cut(s) 57, 417
BisI GCNGC 8 cut(s) 71, 76, 174, 177, 180, 204, 369, 536
BlsI GCNGC 8 cut(s) 72, 77, 175, 178, 181, 205, 370, 537
Bme1390I CCNGG 3 cut(s) 132, 474, 675
Bme18I GGWCC 2 cut(s) 245, 670
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 581
BmgT120I GGNCC 3 cut(s) 245, 488, 670
BmiI GGNNCC 3 cut(s) 108, 468, 672
BmrFI CCNGG 3 cut(s) 132, 474, 675
BmsI GCATC 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 593
BsaJI CCNNGG 4 cut(s) 102, 118, 223, 673
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 457, 476
Bse1I ACTGG 2 cut(s) 183, 650
BseBI CCWGG 2 cut(s) 474, 675
BseDI CCNNGG 4 cut(s) 102, 118, 223, 673
BseGI GGATG 2 cut(s) 416, 441
BseLI CCNNNNNNNGG 3 cut(s) 214, 457, 476
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 183, 650
BseRI GAGGAG 3 cut(s) 54, 119, 420
BseXI GCAGC 6 cut(s) 82, 160, 163, 191, 355, 547
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 2 cut(s) 132, 545
BslI CCNNNNNNNGG 3 cut(s) 214, 457, 476
BsnI GGCC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 5 cut(s) 57, 112, 417, 430, 688
BspACI CCGC 6 cut(s) 75, 153, 204, 423, 477, 564
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 1 cut(s) 29
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 3 cut(s) 108, 468, 672
BspMAI CTGCAG 2 cut(s) 181, 373
BsrI ACTGG 2 cut(s) 183, 650
BssECI CCNNGG 4 cut(s) 102, 118, 223, 673
BssMI GATC 5 cut(s) 57, 112, 417, 430, 688
BssNI GRCGYC 1 cut(s) 593
Bst2UI CCWGG 2 cut(s) 474, 675
Bst4CI ACNGT 2 cut(s) 234, 484
BstACI GRCGYC 1 cut(s) 593
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 2 cut(s) 416, 441
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 2 cut(s) 75, 273
BstKTI GATC 5 cut(s) 60, 115, 420, 433, 691
BstMBI GATC 5 cut(s) 57, 112, 417, 430, 688
BstMWI GCNNNNNNNGC 2 cut(s) 179, 374
BstNI CCWGG 2 cut(s) 474, 675
BstSCI CCNGG 3 cut(s) 130, 472, 673
BstSFI CTRYAG 2 cut(s) 177, 369
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 6 cut(s) 82, 160, 163, 191, 355, 547
BstX2I RGATCY 2 cut(s) 57, 417
BstYI RGATCY 2 cut(s) 57, 417
BsuRI GGCC 1 cut(s) 489
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 2 cut(s) 416, 441
BtsIMutI CAGTG 1 cut(s) 175
CciI TCATGA 1 cut(s) 427
CfoI GCGC 2 cut(s) 75, 273
Cfr13I GGNCC 3 cut(s) 245, 488, 670
CseI GACGC 3 cut(s) 33, 282, 582
Csp6I GTAC 2 cut(s) 647, 664
CviAII CATG 2 cut(s) 428, 667
CviQI GTAC 2 cut(s) 647, 664
DdeI CTNAG 1 cut(s) 16
DpnI GATC 5 cut(s) 59, 114, 419, 432, 690
DpnII GATC 5 cut(s) 57, 112, 417, 430, 688
DrdI GACNNNNNNGTC 1 cut(s) 252
DseDI GACNNNNNNGTC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 492
Eco47I GGWCC 2 cut(s) 245, 670
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 472, 673
FaeI CATG 2 cut(s) 431, 670
FaiI YATR 9 cut(s) 429, 454, 508, 525, 609, 639, 641, 668, 718
FatI CATG 2 cut(s) 427, 666
FauI CCCGC 1 cut(s) 160
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 596
Fnu4HI GCNGC 8 cut(s) 71, 76, 174, 177, 180, 204, 369, 536
FokI GGATG 2 cut(s) 423, 428
Fsp4HI GCNGC 8 cut(s) 71, 76, 174, 177, 180, 204, 369, 536
FspBI CTAG 3 cut(s) 305, 500, 626
GlaI GCGC 2 cut(s) 74, 272
GluI GCNGC 8 cut(s) 71, 76, 174, 177, 180, 204, 369, 536
HaeIII GGCC 1 cut(s) 489
HapII CCGG 2 cut(s) 132, 545
HgaI GACGC 3 cut(s) 33, 282, 582
HhaI GCGC 2 cut(s) 75, 273
Hin1I GRCGYC 1 cut(s) 593
Hin1II CATG 2 cut(s) 431, 670
Hin6I GCGC 2 cut(s) 73, 271
HinP1I GCGC 2 cut(s) 73, 271
HinfI GANTC 1 cut(s) 710
HpaII CCGG 2 cut(s) 132, 545
HphI GGTGA 2 cut(s) 388, 425
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 4 cut(s) 49, 103, 346, 417
Hpy188III TCNNGA 4 cut(s) 61, 121, 243, 428
Hpy8I GTNNAC 1 cut(s) 597
Hpy99I CGWCG 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 234, 484
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 3 cut(s) 29, 179, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 374
HpyF3I CTNAG 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 580
Hsp92I GRCGYC 1 cut(s) 593
Hsp92II CATG 2 cut(s) 431, 670
HspAI GCGC 2 cut(s) 73, 271
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 5 cut(s) 57, 112, 417, 430, 688
LmnI GCTCC 4 cut(s) 41, 104, 106, 290
Lsp1109I GCAGC 6 cut(s) 82, 160, 163, 191, 355, 547
LweI GCATC 1 cut(s) 318
MaeI CTAG 3 cut(s) 305, 500, 626
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 3 cut(s) 394, 617, 652
MalI GATC 5 cut(s) 59, 114, 419, 432, 690
MboI GATC 5 cut(s) 57, 112, 417, 430, 688
MboII GAAGA 1 cut(s) 372
MflI RGATCY 2 cut(s) 57, 417
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 4 cut(s) 10, 32, 197, 679
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 8 cut(s) 32, 97, 128, 218, 398, 401, 454, 569
MseI TTAA 1 cut(s) 530
MslI CAYNNNNRTG 1 cut(s) 627
MspI CCGG 2 cut(s) 132, 545
MspR9I CCNGG 3 cut(s) 132, 474, 675
MvaI CCWGG 2 cut(s) 474, 675
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 179, 374
NciI CCSGG 1 cut(s) 132
NdeII GATC 5 cut(s) 57, 112, 417, 430, 688
NlaIII CATG 2 cut(s) 431, 670
NlaIV GGNNCC 3 cut(s) 108, 468, 672
NmuCI GTSAC 1 cut(s) 394
PagI TCATGA 1 cut(s) 427
PkrI GCNGC 8 cut(s) 72, 77, 175, 178, 181, 205, 370, 537
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
Psp6I CCWGG 2 cut(s) 472, 673
PspGI CCWGG 2 cut(s) 472, 673
PspN4I GGNNCC 3 cut(s) 108, 468, 672
PspPI GGNCC 3 cut(s) 245, 488, 670
PstI CTGCAG 2 cut(s) 181, 373
PsuI RGATCY 2 cut(s) 57, 417
RsaI GTAC 2 cut(s) 648, 665
RsaNI GTAC 2 cut(s) 647, 664
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 8 cut(s) 71, 76, 174, 177, 180, 204, 369, 536
Sau3AI GATC 5 cut(s) 57, 112, 417, 430, 688
Sau96I GGNCC 3 cut(s) 245, 488, 670
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 3 cut(s) 132, 474, 675
SduI GDGCHC 1 cut(s) 242
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 2 cut(s) 177, 369
SinI GGWCC 2 cut(s) 245, 670
SmiMI CAYNNNNRTG 1 cut(s) 627
Sse9I AATT 4 cut(s) 10, 32, 197, 679
SsiI CCGC 6 cut(s) 75, 153, 204, 423, 477, 564
SspI AATATT 1 cut(s) 635
SspMI CTAG 3 cut(s) 305, 500, 626
StyD4I CCNGG 3 cut(s) 130, 472, 673
TaaI ACNGT 2 cut(s) 234, 484
TaiI ACGT 1 cut(s) 583
TaqI TCGA 2 cut(s) 62, 277
TasI AATT 4 cut(s) 10, 32, 197, 679
TatI WGTACW 1 cut(s) 663
TauI GCSGC 2 cut(s) 78, 206
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 6 cut(s) 70, 173, 176, 179, 368, 535
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 2 cut(s) 101, 645
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 245, 670
XmiI GTMKAC 1 cut(s) 596
XspI CTAG 3 cut(s) 305, 500, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.