pycom06g13890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000520
Physical Location & Seq
Forward (+)
18757091 .. 18758602
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13890.2

Sequence Viewer

Length: 555 bp
ATGAAACGCCGATTCGAAGGCGGACCAGGAGAATCCGCGGAGGGGGAGAATCCAATTCCGGCCCAACCCACAAAGCTCCGAGATGCAGATAAGAATAAAGAAAAAATTTCTGTTAAAGACTCTCCGACGACTCATCTCACAAAAGTAGAGGCTGCTCAAGACTCTCAGACTCAACTCCAGCTTGAGGAGAAGAATACTCTTCCATCTTTTCTCAAGGAGGACAATAATCCCACATGCCTAGCCCGTCCTAAACTCATAATCAAGCCAGGCACATTTTCCTCTATGCCGTCTACTTGTCCAATTTGCTCTGAGTATGGACACTTTCCTGGTATGTGCCCCTGGAGGAAACGGCTCCCAAAGGGCGTAACTCAGGTTGGCAAGGGCTATGTAGTAAAGTGGGGGCGTGCTGTTTTTCTTGAGTGTGTTTATTGTTATGAGATTGGTACCCACATGCTTAATGACTGCCCGCATTTTAAAAAACTACTTGAGGAAAATGGAGGGGATGCGCCCTTGCACCTCTGTTTCCTCGGTCATAGACCACTTGCTGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.51

Weight (kDa)

8.34

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 443
AccB1I GGYRCC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 290
AccII CGCG 1 cut(s) 38
AciI CCGC 4 cut(s) 21, 36, 38, 467
AcsI RAATTY 1 cut(s) 105
AfaI GTAC 1 cut(s) 445
AfiI CCNNNNNNNGG 2 cut(s) 42, 184
AjnI CCWGG 4 cut(s) 25, 265, 325, 338
AluBI AGCT 2 cut(s) 76, 181
AluI AGCT 2 cut(s) 76, 181
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 443
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 2 cut(s) 23, 61
AsuII TTCGAA 1 cut(s) 15
AvaII GGWCC 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 443
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 211
BceAI ACGGC 2 cut(s) 271, 365
BciT130I CCWGG 4 cut(s) 27, 267, 327, 340
BfaI CTAG 1 cut(s) 239
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 4 cut(s) 27, 267, 327, 340
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 23, 61
BmiI GGNNCC 2 cut(s) 353, 445
BmrFI CCNGG 4 cut(s) 27, 267, 327, 340
BmsI GCATC 2 cut(s) 73, 493
BpmI CTGGAG 2 cut(s) 161, 361
Bpu14I TTCGAA 1 cut(s) 15
BpuEI CTTGAG 5 cut(s) 141, 197, 203, 437, 506
BsaJI CCNNGG 3 cut(s) 36, 338, 526
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 184
BseBI CCWGG 4 cut(s) 27, 267, 327, 340
BseDI CCNNGG 3 cut(s) 36, 338, 526
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 2 cut(s) 42, 184
BseMII CTCAG 3 cut(s) 179, 300, 383
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 338
BseXI GCAGC 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 443
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 42, 184
BsnI GGCC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 338
BspACI CCGC 4 cut(s) 21, 36, 38, 467
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 3 cut(s) 178, 301, 382
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 353, 445
BspT104I TTCGAA 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 443
BssECI CCNNGG 3 cut(s) 36, 338, 526
Bst2UI CCWGG 4 cut(s) 27, 267, 327, 340
Bst6I CTCTTC 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 405, 467
BstDEI CTNAG 3 cut(s) 165, 309, 369
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 508
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 508
BstNI CCWGG 4 cut(s) 27, 267, 327, 340
BstNSI RCATGY 2 cut(s) 237, 454
BstSCI CCNGG 4 cut(s) 25, 265, 325, 338
BstSLI GKGCMC 1 cut(s) 338
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 405, 467
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 2 cut(s) 23, 61
Cfr42I CCGCGG 1 cut(s) 39
Csp6I GTAC 1 cut(s) 444
CviAII CATG 2 cut(s) 234, 451
CviJI RGCY 8 cut(s) 62, 76, 152, 181, 242, 265, 352, 384
CviKI_1 RGCY 8 cut(s) 62, 76, 152, 181, 242, 265, 352, 384
CviQI GTAC 1 cut(s) 444
DdeI CTNAG 3 cut(s) 165, 309, 369
DraI TTTAAA 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EciI GGCGGA 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 23
EcoRII CCWGG 4 cut(s) 25, 265, 325, 338
FaeI CATG 2 cut(s) 237, 454
FaiI YATR 9 cut(s) 235, 257, 284, 315, 332, 387, 435, 452, 534
FatI CATG 2 cut(s) 233, 450
FauI CCCGC 1 cut(s) 474
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 515
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 507
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 2 cut(s) 161, 361
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 59
HhaI GCGC 1 cut(s) 508
Hin1II CATG 2 cut(s) 237, 454
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HinfI GANTC 7 cut(s) 12, 32, 49, 119, 130, 161, 169
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 4 cut(s) 80, 126, 168, 310
Hpy188III TCNNGA 2 cut(s) 158, 416
Hpy8I GTNNAC 1 cut(s) 291
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 86, 514
HpyF3I CTNAG 3 cut(s) 165, 309, 369
Hsp92II CATG 2 cut(s) 237, 454
HspAI GCGC 1 cut(s) 506
KpnI GGTACC 1 cut(s) 447
KspI CCGCGG 1 cut(s) 39
LmnI GCTCC 2 cut(s) 81, 357
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 73, 493
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 364
MboII GAAGA 2 cut(s) 191, 202
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 3 cut(s) 54, 105, 300
MlyI GAGTC 4 cut(s) 113, 124, 155, 163
MmeI TCCRAC 1 cut(s) 149
MseI TTAA 3 cut(s) 114, 456, 474
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 4 cut(s) 27, 267, 327, 340
MvaI CCWGG 4 cut(s) 27, 267, 327, 340
MvnI CGCG 1 cut(s) 38
NlaIII CATG 2 cut(s) 237, 454
NlaIV GGNNCC 2 cut(s) 353, 445
NspI RCATGY 2 cut(s) 237, 454
NspV TTCGAA 1 cut(s) 15
PfeI GAWTC 3 cut(s) 12, 32, 49
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 4 cut(s) 113, 124, 155, 163
PpsI GAGTC 4 cut(s) 113, 124, 155, 163
Psp6I CCWGG 4 cut(s) 25, 265, 325, 338
PspGI CCWGG 4 cut(s) 25, 265, 325, 338
PspN4I GGNNCC 2 cut(s) 353, 445
PspPI GGNCC 2 cut(s) 23, 61
RsaI GTAC 1 cut(s) 445
RsaNI GTAC 1 cut(s) 444
SacII CCGCGG 1 cut(s) 39
SaqAI TTAA 3 cut(s) 114, 456, 474
SatI GCNGC 1 cut(s) 153
Sau96I GGNCC 2 cut(s) 23, 61
SchI GAGTC 4 cut(s) 113, 124, 155, 163
ScrFI CCNGG 4 cut(s) 27, 267, 327, 340
SduI GDGCHC 1 cut(s) 338
SetI ASST 4 cut(s) 78, 183, 375, 519
SfaNI GCATC 2 cut(s) 73, 493
Sfr303I CCGCGG 1 cut(s) 39
SfuI TTCGAA 1 cut(s) 15
SgrBI CCGCGG 1 cut(s) 39
SinI GGWCC 1 cut(s) 23
SmlI CTYRAG 5 cut(s) 156, 182, 212, 416, 485
SmoI CTYRAG 5 cut(s) 156, 182, 212, 416, 485
Sse9I AATT 3 cut(s) 54, 105, 300
SsiI CCGC 4 cut(s) 21, 36, 38, 467
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 4 cut(s) 25, 265, 325, 338
TaqI TCGA 1 cut(s) 15
TaqII GACCGA 1 cut(s) 518
TasI AATT 3 cut(s) 54, 105, 300
TfiI GAWTC 3 cut(s) 12, 32, 49
Tru1I TTAA 3 cut(s) 114, 456, 474
Tru9I TTAA 3 cut(s) 114, 456, 474
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 1 cut(s) 105
XceI RCATGY 2 cut(s) 237, 454
XmiI GTMKAC 1 cut(s) 290
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.