Rh2DG483000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000520
Physical Location & Seq
Reverse (-)
69832035 .. 69836229
4195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG483000.1

Sequence Viewer

Length: 492 bp
ATGGACAGCAATTTCTCTGGGGCGATTGCAAAATTGAGAGGAGCTTCGGACGATGAGATCTCGATGGGGCAGCGTGGCGATTTGATGAAGCCCAATAGCTCCGAGGGCATCAAGTCCAAAGAACCAAAGGCTACTGGAGTATCAGACAAAAACAATAAAAAAGTGGCTGCAGTTGCTTCTGTCGTCACCGAAAGAGGAGGATGTCAGATCTGCGGTCATGATCACCAGCACATTCGTTGCCCATACTTGGAGTTGGTTCCACCCGGCGGAACTGTTGGCCCTGACTATGTAGTAGTATGTGGTTATGAGTTAAAGCAGCCTATTCCGGCTTGTTGTTGGTCGTGCGGTTATTGGGGAGGACGTGCGGTGGAGGCGTCTACCTTTGATTATAGCTTTCGTTACTACCTAGATGAATTTTATATAGAAGAACCAGTTACGGCAGAGTACATGGACCCAGACAAGTACGCTGAACAAAAACCTGTAACGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.94

Weight (kDa)

5.07

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 377
AciI CCGC 4 cut(s) 213, 267, 345, 365
AcsI RAATTY 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 2 cut(s) 446, 464
AfiI CCNNNNNNNGG 2 cut(s) 247, 266
AjiI CACGTC 1 cut(s) 362
AluBI AGCT 3 cut(s) 44, 99, 393
AluI AGCT 3 cut(s) 44, 99, 393
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 3 cut(s) 70, 167, 316
ApoI RAATTY 1 cut(s) 413
AspS9I GGNCC 2 cut(s) 278, 451
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 178, 215
AvaII GGWCC 1 cut(s) 451
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BbvI GCAGC 3 cut(s) 82, 154, 328
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 453
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 1 cut(s) 264
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 2 cut(s) 57, 207
BisI GCNGC 3 cut(s) 71, 168, 317
BlsI GCNGC 3 cut(s) 72, 169, 318
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 451
BmgBI CACGTC 1 cut(s) 362
BmgT120I GGNCC 2 cut(s) 278, 451
BmiI GGNNCC 2 cut(s) 258, 453
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 264
BsaHI GRCGYC 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 266
Bse1I ACTGG 2 cut(s) 139, 431
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 247, 266
BseNI ACTGG 2 cut(s) 139, 431
BseRI GAGGAG 2 cut(s) 54, 210
BseXI GCAGC 3 cut(s) 82, 154, 328
BshFI GGCC 1 cut(s) 279
BsiSI CCGG 2 cut(s) 264, 326
BslI CCNNNNNNNGG 2 cut(s) 247, 266
BsnI GGCC 1 cut(s) 279
Bsp143I GATC 3 cut(s) 57, 207, 220
BspACI CCGC 4 cut(s) 213, 267, 345, 365
BspANI GGCC 1 cut(s) 279
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 258, 453
BspMAI CTGCAG 1 cut(s) 172
BsrI ACTGG 2 cut(s) 139, 431
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 3 cut(s) 57, 207, 220
BssNI GRCGYC 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 274
BstACI GRCGYC 1 cut(s) 374
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 3 cut(s) 60, 210, 223
BstMBI GATC 3 cut(s) 57, 207, 220
BstMWI GCNNNNNNNGC 3 cut(s) 105, 173, 371
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 82, 154, 328
BstX2I RGATCY 2 cut(s) 57, 207
BstYI RGATCY 2 cut(s) 57, 207
BsuRI GGCC 1 cut(s) 279
BtrI CACGTC 1 cut(s) 362
BtsCI GGATG 1 cut(s) 206
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 278, 451
CseI GACGC 1 cut(s) 363
Csp6I GTAC 2 cut(s) 445, 463
CviAII CATG 2 cut(s) 218, 448
CviJI RGCY 9 cut(s) 44, 91, 99, 131, 167, 279, 319, 329, 393
CviKI_1 RGCY 9 cut(s) 44, 91, 99, 131, 167, 279, 319, 329, 393
CviQI GTAC 2 cut(s) 445, 463
DpnI GATC 3 cut(s) 59, 209, 222
DpnII GATC 3 cut(s) 57, 207, 220
EciI GGCGGA 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 451
FaeI CATG 2 cut(s) 221, 451
FaiI YATR 9 cut(s) 219, 244, 288, 298, 306, 390, 420, 422, 449
FatI CATG 2 cut(s) 217, 447
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 3 cut(s) 71, 168, 317
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 3 cut(s) 71, 168, 317
FspBI CTAG 1 cut(s) 407
GluI GCNGC 3 cut(s) 71, 168, 317
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 1 cut(s) 279
HapII CCGG 2 cut(s) 264, 326
HgaI GACGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 2 cut(s) 221, 451
HpaII CCGG 2 cut(s) 264, 326
HphI GGTGA 2 cut(s) 178, 215
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 4 cut(s) 49, 103, 145, 207
Hpy188III TCNNGA 2 cut(s) 61, 218
Hpy8I GTNNAC 1 cut(s) 378
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 2 cut(s) 361, 485
HpyCH4V TGCA 2 cut(s) 29, 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 173, 371
HpySE526I ACGT 2 cut(s) 361, 485
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 2 cut(s) 221, 451
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 57, 207, 220
LmnI GCTCC 2 cut(s) 41, 104
LpnPI CCDG 8 cut(s) 3, 120, 239, 277, 294, 339, 444, 468
Lsp1109I GCAGC 3 cut(s) 82, 154, 328
LweI GCATC 1 cut(s) 117
MaeI CTAG 1 cut(s) 407
MaeII ACGT 2 cut(s) 361, 485
MaeIII GTNAC 4 cut(s) 184, 398, 433, 481
MalI GATC 3 cut(s) 59, 209, 222
MboI GATC 3 cut(s) 57, 207, 220
MboII GAAGA 1 cut(s) 437
MflI RGATCY 2 cut(s) 57, 207
MluCI AATT 3 cut(s) 10, 32, 413
MnlI CCTC 6 cut(s) 32, 97, 188, 191, 350, 364
MseI TTAA 2 cut(s) 311, 490
MspI CCGG 2 cut(s) 264, 326
MspR9I CCNGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 105, 173, 371
NciI CCSGG 1 cut(s) 264
NdeII GATC 3 cut(s) 57, 207, 220
NlaIII CATG 2 cut(s) 221, 451
NlaIV GGNNCC 2 cut(s) 258, 453
NmuCI GTSAC 1 cut(s) 184
PagI TCATGA 1 cut(s) 217
PkrI GCNGC 3 cut(s) 72, 169, 318
PspN4I GGNNCC 2 cut(s) 258, 453
PspPI GGNCC 2 cut(s) 278, 451
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 2 cut(s) 57, 207
RsaI GTAC 2 cut(s) 446, 464
RsaNI GTAC 2 cut(s) 445, 463
SaqAI TTAA 2 cut(s) 311, 490
SatI GCNGC 3 cut(s) 71, 168, 317
Sau3AI GATC 3 cut(s) 57, 207, 220
Sau96I GGNCC 2 cut(s) 278, 451
ScrFI CCNGG 1 cut(s) 264
SetI ASST 8 cut(s) 46, 101, 364, 383, 395, 408, 481, 488
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 451
Sse9I AATT 3 cut(s) 10, 32, 413
SsiI CCGC 4 cut(s) 213, 267, 345, 365
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 2 cut(s) 364, 488
TaqI TCGA 1 cut(s) 62
TasI AATT 3 cut(s) 10, 32, 413
TatI WGTACW 1 cut(s) 444
Tru1I TTAA 2 cut(s) 311, 490
Tru9I TTAA 2 cut(s) 311, 490
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 3 cut(s) 70, 167, 316
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 101, 426
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 377
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.