Rroxscaffold_4G00290420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000520
Physical Location & Seq
Reverse (-)
10935981 .. 10936334
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290420.1

Sequence Viewer

Length: 354 bp
ATGGATATTTCTGAAATCACAGTGAGACCAGTAGTGGGCAAGGAGAAGGAGAAGCCTGCAGTGAGCAAGGAGAAAGAGAAGCCTGAAGAAGATCTAAAGGCTGCCGCCGGAGTCATGAAACGAGACGGATGTCGGATTTGTGGTGCTGTCCACCAACACATTATTCGTTGCCCGTACTTGGAGTTTGTTCCACCTGGCGGAACTGTTGGCCCTAACTATCTAGTAGCATGTGACGTATGTGGTTATGAGTTAAAGCAGCCTATTGCGGCTTTTTGTTGGTCGTGCGGTAATTGGGGAGGGCGTGCGGTGCAGTGGAGGCGTCTACCTTCGATTATAGCCTTCGTTACTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.87

Weight (kDa)

8.5

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 322
AciI CCGC 5 cut(s) 105, 198, 266, 285, 305
AcuI CTGAAG 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 319
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 35, 178, 197
AjnI CCWGG 1 cut(s) 193
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
Alw26I GTCTC 2 cut(s) 19, 117
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 101, 256
AspS9I GGNCC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 88, 268
BciT130I CCWGG 1 cut(s) 195
BcoDI GTCTC 2 cut(s) 19, 117
BfaI CTAG 2 cut(s) 221, 352
BfmI CTRYAG 1 cut(s) 57
BglII AGATCT 1 cut(s) 91
BisI GCNGC 4 cut(s) 102, 105, 257, 267
BlsI GCNGC 4 cut(s) 103, 106, 258, 268
Bme1390I CCNGG 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 195
BoxI GACNNNNGTC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 19
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 178, 197
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 3 cut(s) 35, 178, 197
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 88, 268
BsgI GTGCAG 1 cut(s) 329
BshFI GGCC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 3 cut(s) 35, 178, 197
BsmAI GTCTC 2 cut(s) 19, 117
BsmBI CGTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 5 cut(s) 105, 198, 266, 285, 305
BspANI GGCC 1 cut(s) 210
BspHI TCATGA 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 19
BsrI ACTGG 1 cut(s) 29
BssMI GATC 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 22, 205
BstACI GRCGYC 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 57, 303
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 2 cut(s) 19, 117
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 307, 316
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 231
BstPAI GACNNNNGTC 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 88, 268
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 134
BtsI GCAGTG 2 cut(s) 66, 317
BtsIMutI CAGTG 3 cut(s) 27, 66, 317
Cac8I GCNNGC 2 cut(s) 57, 303
CciI TCATGA 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 209
CseI GACGC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 115, 228
CviJI RGCY 7 cut(s) 55, 82, 101, 210, 259, 269, 338
CviKI_1 RGCY 7 cut(s) 55, 82, 101, 210, 259, 269, 338
CviQI GTAC 1 cut(s) 175
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 193
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 2 cut(s) 118, 231
FaiI YATR 5 cut(s) 116, 229, 238, 246, 335
FatI CATG 2 cut(s) 114, 227
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 4 cut(s) 102, 105, 257, 267
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 4 cut(s) 102, 105, 257, 267
FspBI CTAG 2 cut(s) 221, 352
GluI GCNGC 4 cut(s) 102, 105, 257, 267
HaeIII GGCC 1 cut(s) 210
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 2 cut(s) 118, 231
HinfI GANTC 1 cut(s) 111
HpaII CCGG 1 cut(s) 108
Hpy166II GTNNAC 2 cut(s) 151, 323
Hpy188I TCNGA 2 cut(s) 13, 135
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 2 cut(s) 151, 323
HpyAV CCTTC 3 cut(s) 40, 336, 349
HpyCH4III ACNGT 2 cut(s) 22, 205
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 59, 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 316
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 2 cut(s) 118, 231
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 6 cut(s) 42, 69, 96, 121, 180, 207
Lsp1109I GCAGC 2 cut(s) 88, 268
MaeI CTAG 2 cut(s) 221, 352
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 230, 343
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 2 cut(s) 98, 101
MflI RGATCY 1 cut(s) 91
MluCI AATT 1 cut(s) 289
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 2 cut(s) 290, 309
MseI TTAA 1 cut(s) 251
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 307, 316
NdeII GATC 1 cut(s) 91
NlaIII CATG 2 cut(s) 118, 231
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 231
PagI TCATGA 1 cut(s) 114
PkrI GCNGC 4 cut(s) 103, 106, 258, 268
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PshAI GACNNNNGTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspPI GGNCC 1 cut(s) 209
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 4 cut(s) 102, 105, 257, 267
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 195
SetI ASST 4 cut(s) 196, 237, 328, 353
SfcI CTRYAG 1 cut(s) 57
Sse9I AATT 1 cut(s) 289
SsiI CCGC 5 cut(s) 105, 198, 266, 285, 305
SspMI CTAG 2 cut(s) 221, 352
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 22, 205
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 329
TasI AATT 1 cut(s) 289
TauI GCSGC 2 cut(s) 107, 269
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TscAI CASTG 3 cut(s) 27, 66, 317
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 2 cut(s) 101, 256
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 3 cut(s) 27, 66, 317
XceI RCATGY 1 cut(s) 231
XmiI GTMKAC 1 cut(s) 322
XspI CTAG 2 cut(s) 221, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.