RLG00000027358

Protein cornichon homolog 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000520
Physical Location & Seq
Reverse (-)
10890762 .. 10892510
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027358

Sequence Viewer

Length: 1005 bp
ATGGAGATGCTATGGACATGGCTTTTGAGTATCTTCTTCATCTTAACTCTCTTATGCCTTGTGGGTTATCAGCTTTTGTGCCTAATGGACCTCGAGGACGATTACATCAACTTATATGATTCATCATCTCGGATAAACCGTACTGTTTTGCCAGAGTTTATCGTTCAAGGAGTTTTCTGCGTCATTCTTTTTATAACGAGACATTGGTCTATGCTTCCATTGGCTCTCCCGCACCTGTATTATAACGTCAATTCGTACATGAAGGGGTGGCACTTGGCAGATGTGACTGAGATCTACAACCTGCTAAGCTGGGAGAAAAAACAACGCATCTTCAAGATTGCCTATCTGTTCATCCTTGCCGTCCTCTCTCTATTCGGGATAGGATTATGTTTTGTCATAATATTGTCTATAAATACCTACCTTCAAGATAGAATAGAAGAAGATTGTACATCCGTGACCACTCACCCCAGCACCAAAATTACCCTAGATATGGATATTTCTGGAATCACAGTGAGACCAGCAGTGGGCAAGGAGAAGGAGAAGCACTCTAAAGAAGATCTAAAGGCTGCCGCCAGAGTCATCAAAAAAGAAAGATGTCAGATTTGTGGTGATGATCACCAACACATTATTCGTTGCCCGTACTTAGACTGTGTTCCACCTGGTGCAACTGTTGGCCCTGACTATCTAGTAATATGTGACTTGTGTGGTTATGAGTTATTGCAGCCTACAGCGGCTCACTGTTGGATGTGCGGTAAGTGGGGAGGACGTGCGGTGGAGGCGTCTACCTTTGATGAGAGCTATCGTAACCACCTAGAAGAAGATTACATAGCAGAACCAATTGTGTATGCAGAGTACATAGACCTAGACAACTACACAACACCAGAACCAGTGCAAATTCAGAAGACTGAACATCAAGATCACATAAAGAAACATCATATAAAAACTAAAAGCCGGACTCTGAAGAAAAACAAAACTAAAAGTCGGACACTGAAGAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

335

Amino Acids

38.69

Weight (kDa)

6.88

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 5 - 125 6.7e-36 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000520)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08811 FvH4_2g13461
malus_domestica MD02G1305800.v1.1 MD02G1311300.v1.1 MD02G1311400.v1.1 MD03G1254800.v1.1 MD04G1165700.v1.1 MD05G1031200.v1.1 MD06G1150500.v1.1 MD06G1150600.v1.1 MD06G1150900.v1.1 MD06G1151100.v1.1 MD06G1151200.v1.1 MD07G1018900.v1.1 MD07G1019400.v1.1 MD07G1019500.v1.1 MD07G1023400.v1.1 MD08G1234000.v1.1 MD08G1234200.v1.1 MD13G1233200.v1.1 MD17G1268200.v1.1
pyrus_communis pycom02g25630 pycom02g26130 pycom05g02240 pycom05g02610 pycom06g13890 pycom06g13900 pycom07g01500 pycom07g01510 pycom07g01520 pycom07g01530 pycom07g01540 pycom08g17170 pycom08g17230 pycom08g20290 pycom13g20570
rosa_chinensis RchiOBHm_Chr2g0139011 RchiOBHm_Chr3g0492121
rosa_laevigata RLG00000002413 RLG00000019773 RLG00000019781 RLG00000022823 RLG00000024839 RLG00000027358
rosa_multiflora Rmu_sc0000379.1_g000005 Rmu_sc0002029.1_g000002 Rmu_sc0009440.1_g000007
rosa_roxburghii Rroxscaffold_2G00105770 Rroxscaffold_2G00105790 Rroxscaffold_2G00105890 Rroxscaffold_3G00241430 Rroxscaffold_4G00290390 Rroxscaffold_4G00290420 Rroxscaffold_7G00207210
rosa_rugosa Rorug02G0354100 Rorug02G0354200 Rorug02G0354300 Rorug02G0354400 Rorug02G0354500 Rorug03G0323900 Rorug07G0173300 Rorug07G0173400
rosa_samantha Rh1AG336500 Rh2AG403700 Rh2AG403900 Rh2BG414300 Rh2BG414400 Rh2BG474400 Rh2CG389800 Rh2CG390000 Rh2DG423900 Rh2DG424000 Rh2DG483000 Rh3CG333300 Rh3DG335400 Rh6AG108100 Rh6BG103000 Rh6BG103400 Rh6CG096600 Rh6DG090300 Rh7AG315900 Rh7BG306200 Rh7DG314100 Rh7DG314600
rosa_wichuraiana Rw2G032870 Rw7G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 194, 243
AbsI CCTCGAGG 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 309
AccI GTMKAC 1 cut(s) 782
AciI CCGC 5 cut(s) 230, 570, 731, 750, 770
AcsI RAATTY 1 cut(s) 894
AcuI CTGAAG 1 cut(s) 980
AcyI GRCGYC 1 cut(s) 779
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 5 cut(s) 142, 257, 448, 641, 854
AfiI CCNNNNNNNGG 2 cut(s) 490, 524
AgsI TTSAA 3 cut(s) 167, 334, 425
AjiI CACGTC 1 cut(s) 767
AjnI CCWGG 1 cut(s) 658
AjuI GAANNNNNNNTTGG 2 cut(s) 612, 644
AluBI AGCT 3 cut(s) 73, 309, 798
AluI AGCT 3 cut(s) 73, 309, 798
Alw26I GTCTC 2 cut(s) 193, 508
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 1 cut(s) 673
ApeKI GCWGC 2 cut(s) 566, 721
ApoI RAATTY 1 cut(s) 894
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AspS9I GGNCC 2 cut(s) 88, 674
AsuHPI GGTGA 3 cut(s) 455, 608, 620
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 908
BbvI GCAGC 2 cut(s) 553, 733
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 660
BclI TGATCA 1 cut(s) 613
BcoDI GTCTC 2 cut(s) 193, 508
BfaI CTAG 4 cut(s) 485, 686, 812, 863
BfmI CTRYAG 1 cut(s) 726
BfuAI ACCTGC 1 cut(s) 309
BglII AGATCT 2 cut(s) 291, 556
BisI GCNGC 4 cut(s) 567, 570, 722, 732
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 4 cut(s) 568, 571, 723, 733
Bme1390I CCNGG 1 cut(s) 660
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 92
BmgBI CACGTC 1 cut(s) 767
BmgT120I GGNCC 2 cut(s) 88, 674
BmrFI CCNGG 1 cut(s) 660
BmsI GCATC 1 cut(s) 336
BoxI GACNNNNGTC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 908
BplI GAGNNNNNCTC 2 cut(s) 530, 562
Bpu1102I GCTNAGC 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 508
Bsc4I CCNNNNNNNGG 2 cut(s) 490, 524
Bse1I ACTGG 1 cut(s) 887
BseBI CCWGG 1 cut(s) 660
BseGI GGATG 3 cut(s) 351, 449, 750
BseLI CCNNNNNNNGG 2 cut(s) 490, 524
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 887
BseXI GCAGC 2 cut(s) 553, 733
BseYI CCCAGC 2 cut(s) 309, 467
BshFI GGCC 1 cut(s) 675
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 952
BslI CCNNNNNNNGG 2 cut(s) 490, 524
BsmAI GTCTC 2 cut(s) 193, 508
BsnI GGCC 1 cut(s) 675
Bso31I GGTCTC 1 cut(s) 508
BsoBI CYCGRG 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 446
Bsp143I GATC 4 cut(s) 291, 556, 613, 916
Bsp1720I GCTNAGC 1 cut(s) 305
BspACI CCGC 5 cut(s) 230, 570, 731, 750, 770
BspANI GGCC 1 cut(s) 675
BspCNI CTCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 508
BsrGI TGTACA 1 cut(s) 446
BsrI ACTGG 1 cut(s) 887
BssMI GATC 4 cut(s) 291, 556, 613, 916
BssNI GRCGYC 1 cut(s) 779
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 6 cut(s) 140, 145, 511, 650, 670, 740
BstACI GRCGYC 1 cut(s) 779
BstAUI TGTACA 1 cut(s) 446
BstDEI CTNAG 3 cut(s) 288, 305, 643
BstF5I GGATG 3 cut(s) 351, 449, 750
BstKTI GATC 4 cut(s) 294, 559, 616, 919
BstMAI GTCTC 2 cut(s) 193, 508
BstMBI GATC 4 cut(s) 291, 556, 613, 916
BstMWI GCNNNNNNNGC 1 cut(s) 776
BstNI CCWGG 1 cut(s) 660
BstPAI GACNNNNGTC 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 1 cut(s) 726
BstV1I GCAGC 2 cut(s) 553, 733
BstV2I GAAGAC 1 cut(s) 908
BstX2I RGATCY 2 cut(s) 291, 556
BstYI RGATCY 2 cut(s) 291, 556
BsuRI GGCC 1 cut(s) 675
BtrI CACGTC 1 cut(s) 767
BtsCI GGATG 3 cut(s) 351, 449, 750
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 5 cut(s) 516, 528, 736, 894, 986
BveI ACCTGC 1 cut(s) 309
Cfr13I GGNCC 2 cut(s) 88, 674
CseI GACGC 2 cut(s) 169, 768
CsiI ACCWGGT 1 cut(s) 658
Csp6I GTAC 5 cut(s) 141, 256, 447, 640, 853
CviAII CATG 2 cut(s) 18, 259
CviQI GTAC 5 cut(s) 141, 256, 447, 640, 853
DdeI CTNAG 3 cut(s) 288, 305, 643
DpnI GATC 4 cut(s) 293, 558, 615, 918
DpnII GATC 4 cut(s) 291, 556, 613, 916
DraIII CACNNNGTG 1 cut(s) 662
Eco31I GGTCTC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 980
Eco88I CYCGRG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 658
FaeI CATG 2 cut(s) 21, 262
FatI CATG 2 cut(s) 17, 258
FauI CCCGC 1 cut(s) 237
FbaI TGATCA 1 cut(s) 613
FblI GTMKAC 1 cut(s) 782
Fnu4HI GCNGC 4 cut(s) 567, 570, 722, 732
FokI GGATG 3 cut(s) 338, 436, 757
Fsp4HI GCNGC 4 cut(s) 567, 570, 722, 732
FspBI CTAG 4 cut(s) 485, 686, 812, 863
GluI GCNGC 4 cut(s) 567, 570, 722, 732
GsaI CCCAGC 2 cut(s) 313, 471
HaeIII GGCC 1 cut(s) 675
HapII CCGG 1 cut(s) 952
HgaI GACGC 2 cut(s) 169, 768
Hin1I GRCGYC 1 cut(s) 779
Hin1II CATG 2 cut(s) 21, 262
HinfI GANTC 4 cut(s) 119, 504, 576, 955
HpaII CCGG 1 cut(s) 952
HphI GGTGA 3 cut(s) 455, 608, 620
Hpy166II GTNNAC 1 cut(s) 783
Hpy188I TCNGA 5 cut(s) 132, 600, 900, 960, 984
Hpy188III TCNNGA 5 cut(s) 334, 376, 425, 501, 914
Hpy8I GTNNAC 1 cut(s) 783
HpyAV CCTTC 3 cut(s) 256, 431, 529
HpyCH4III ACNGT 6 cut(s) 140, 145, 511, 650, 670, 740
HpyCH4IV ACGT 2 cut(s) 246, 766
HpyCH4V TGCA 4 cut(s) 665, 721, 848, 892
HpyF10VI GCNNNNNNNGC 1 cut(s) 776
HpyF3I CTNAG 3 cut(s) 288, 305, 643
HpySE526I ACGT 2 cut(s) 246, 766
Hsp92I GRCGYC 1 cut(s) 779
Hsp92II CATG 2 cut(s) 21, 262
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 4 cut(s) 291, 556, 613, 916
Lsp1109I GCAGC 2 cut(s) 553, 733
LweI GCATC 1 cut(s) 336
MabI ACCWGGT 1 cut(s) 658
MaeI CTAG 4 cut(s) 485, 686, 812, 863
MaeII ACGT 2 cut(s) 246, 766
MaeIII GTNAC 4 cut(s) 283, 454, 695, 803
MalI GATC 4 cut(s) 293, 558, 615, 918
MboI GATC 4 cut(s) 291, 556, 613, 916
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 2 cut(s) 291, 556
MluCI AATT 4 cut(s) 250, 477, 837, 894
MlyI GAGTC 2 cut(s) 585, 949
MmeI TCCRAC 2 cut(s) 722, 962
MnlI CCTC 5 cut(s) 88, 101, 374, 755, 769
MseI TTAA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 1 cut(s) 952
MspR9I CCNGG 1 cut(s) 660
MunI CAATTG 1 cut(s) 837
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 1 cut(s) 776
NdeII GATC 4 cut(s) 291, 556, 613, 916
NlaIII CATG 2 cut(s) 21, 262
NmuCI GTSAC 3 cut(s) 283, 454, 695
PaeR7I CTCGAG 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 136
PfeI GAWTC 2 cut(s) 119, 504
PkrI GCNGC 4 cut(s) 568, 571, 723, 733
PleI GAGTC 2 cut(s) 584, 949
PpsI GAGTC 2 cut(s) 584, 949
PshAI GACNNNNGTC 1 cut(s) 205
PsiI TTATAA 2 cut(s) 194, 243
Psp6I CCWGG 1 cut(s) 658
PspFI CCCAGC 2 cut(s) 309, 467
PspGI CCWGG 1 cut(s) 658
PspPI GGNCC 2 cut(s) 88, 674
PspXI VCTCGAGB 1 cut(s) 92
PsuI RGATCY 2 cut(s) 291, 556
RsaI GTAC 5 cut(s) 142, 257, 448, 641, 854
RsaNI GTAC 5 cut(s) 141, 256, 447, 640, 853
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 4 cut(s) 567, 570, 722, 732
Sau3AI GATC 4 cut(s) 291, 556, 613, 916
Sau96I GGNCC 2 cut(s) 88, 674
SchI GAGTC 2 cut(s) 585, 949
ScrFI CCNGG 1 cut(s) 660
SexAI ACCWGGT 1 cut(s) 658
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 1 cut(s) 726
Sfr274I CTCGAG 1 cut(s) 92
SinI GGWCC 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 4 cut(s) 250, 477, 837, 894
SsiI CCGC 5 cut(s) 230, 570, 731, 750, 770
SspI AATATT 1 cut(s) 402
SspMI CTAG 4 cut(s) 485, 686, 812, 863
StyD4I CCNGG 1 cut(s) 658
TaaI ACNGT 6 cut(s) 140, 145, 511, 650, 670, 740
TaiI ACGT 2 cut(s) 249, 769
TaqI TCGA 1 cut(s) 93
TasI AATT 4 cut(s) 250, 477, 837, 894
TatI WGTACW 2 cut(s) 446, 852
TauI GCSGC 2 cut(s) 572, 734
TfiI GAWTC 2 cut(s) 119, 504
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 5 cut(s) 516, 528, 743, 894, 993
TseFI GTSAC 3 cut(s) 283, 454, 695
TseI GCWGC 2 cut(s) 566, 721
Tsp45I GTSAC 3 cut(s) 283, 454, 695
TspDTI ATGAA 4 cut(s) 28, 111, 275, 340
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 5 cut(s) 516, 528, 743, 894, 993
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 894
XhoI CTCGAG 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 782
XspI CTAG 4 cut(s) 485, 686, 812, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.